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1.
J Microbiol Biotechnol ; 34(5): 1017-1028, 2024 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-38803105

RESUMEN

Lignocellulolytic enzymes play a crucial role in efficiently converting lignocellulose into valuable platform molecules in various industries. However, they are limited by their production yields, costs, and stability. Consequently, their production by producers adapted to local environments and the choice of low-cost raw materials can address these limitations. Due to the large amounts of olive stones (OS) generated in Morocco which are still undervalued, Penicillium crustosum, Fusarium nygamai, Trichoderma capillare, and Aspergillus calidoustus, are cultivated under different fermentation techniques using this by-product as a local lignocellulosic substrate. Based on a multilevel factorial design, their potential to produce lignocellulolytic enzymes during 15 days of dark incubation was evaluated. The results revealed that P. crustosum expressed a maximum total cellulase activity of 10.9 IU/ml under sequential fermentation (SF) and 3.6 IU/ml of ß-glucosidase activity under submerged fermentation (SmF). F. nygamai recorded the best laccase activity of 9 IU/ml under solid-state fermentation (SSF). Unlike T. capillare, SF was the inducive culture for the former activity with 7.6 IU/ml. A. calidoustus produced, respectively, 1,009 µg/ml of proteins and 11.5 IU/ml of endoglucanase activity as the best results achieved. Optimum cellulase production took place after the 5th day under SF, while ligninases occurred between the 9th and the 11th days under SSF. This study reports for the first time the lignocellulolytic activities of F. nygamai and A. calidoustus. Furthermore, it underlines the potential of the four fungi as biomass decomposers for environmentally-friendly applications, emphasizing the efficiency of OS as an inducing substrate for enzyme production.


Asunto(s)
Fermentación , Lignina , Olea , Lignina/metabolismo , Olea/microbiología , Aspergillus/enzimología , Aspergillus/metabolismo , Celulasa/metabolismo , Celulasa/biosíntesis , Lacasa/metabolismo , Lacasa/biosíntesis , Penicillium/enzimología , Penicillium/metabolismo , beta-Glucosidasa/metabolismo , beta-Glucosidasa/biosíntesis , Fusarium/enzimología , Fusarium/metabolismo , Trichoderma/enzimología , Trichoderma/metabolismo , Hongos/enzimología , Hongos/metabolismo , Marruecos , Proteínas Fúngicas/metabolismo
2.
Bioresour Technol ; 402: 130781, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38701986

RESUMEN

Textile and medical effluents causing bioaccumulation and biomagnification have been successfully biodegraded by fungal laccases. Here, a decision-making tool was developed and applied to evaluate 45 different laccase production strategies which determined the best potential source from a techno-economical perspective. Laccase production cost was calculated with a fixed output of 109 enzymatic units per batch (USD$per109U) and a sensitivity analysis was performed. Results indicate that optimization of enzymatic kinetics for each organism is essential to avoid exceeding the fermentation time point at which production titer reaches its peak and, therefore, higher production costs. Overall, the most cost-effective laccase-producing strategy was obtained when using Pseudolagarobasidium acaciicola with base production cost of USD $42.46 per 109 U. This works serves as platform for decision-making to find the optimal laccase production strategy based on techno-economic parameters.


Asunto(s)
Lacasa , Lacasa/metabolismo , Técnicas de Apoyo para la Decisión , Biotecnología/métodos , Biotecnología/economía , Hongos/enzimología , Cinética , Fermentación
3.
J Agric Food Chem ; 72(18): 10163-10178, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38653191

RESUMEN

Oxalate decarboxylase (OXDC) is a typical Mn2+/Mn3+ dependent metal enzyme and splits oxalate to formate and CO2 without any organic cofactors. Fungi and bacteria are the main organisms expressing the OXDC gene, but with a significantly different mechanism of gene expression and regulation. Many articles reported its potential applications in the clinical treatment of hyperoxaluria, low-oxalate food processing, degradation of oxalate salt deposits, oxalate acid diagnostics, biocontrol, biodemulsifier, and electrochemical oxidation. However, some questions still remain to be clarified about the role of substrate binding and/or protein environment in modulating the redox properties of enzyme-bound Mn(II)/Mn(III), the nature of dioxygen involved in the catalytic mechanism, and how OXDC acquires Mn(II) /Mn(III). This review mainly summarizes its biochemical and structure characteristics, gene expression and regulation, and catalysis mechanism. We also deep-mined oxalate decarboxylase gene data from National Center for Biotechnology Information to give some insights to explore new OXDC with diverse biochemical properties.


Asunto(s)
Bacterias , Carboxiliasas , Carboxiliasas/genética , Carboxiliasas/metabolismo , Carboxiliasas/química , Bacterias/genética , Bacterias/enzimología , Bacterias/metabolismo , Hongos/genética , Hongos/enzimología , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/química , Biocatálisis , Oxalatos/metabolismo , Oxalatos/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/química , Regulación Enzimológica de la Expresión Génica , Humanos , Catálisis , Animales
4.
Biochim Biophys Acta Proteins Proteom ; 1872(4): 141012, 2024 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-38492831

RESUMEN

Lytic polysaccharide monooxygenases (LPMOs) are redox enzymes widely studied for their involvement in microbial and fungal biomass degradation. The catalytic versatility of these enzymes is demonstrated by the recent discovery of LPMOs in arthropods, viruses, insects and ferns, where they fulfill diverse functions beyond biomass conversion. This mini-review puts a spotlight on a recently recognized aspect of LPMOs: their role in infectious processes in human pathogens. It discusses the occurrence and potential biological mechanisms of LPMOs associated with human pathogens and provides an outlook on future avenues in this emerging and exciting research field.


Asunto(s)
Oxigenasas de Función Mixta , Polisacáridos , Humanos , Oxigenasas de Función Mixta/metabolismo , Polisacáridos/metabolismo , Animales , Hongos/enzimología , Hongos/patogenicidad
5.
J Mol Biol ; 435(14): 168018, 2023 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-37356897

RESUMEN

The Enzyme Function Initiative (EFI) provides a web resource with "genomic enzymology" web tools to leverage the protein (UniProt) and genome (European Nucleotide Archive; ENA; https://www.ebi.ac.uk/ena/) databases to assist the assignment of in vitro enzymatic activities and in vivo metabolic functions to uncharacterized enzymes (https://efi.igb.illinois.edu/). The tools enable (1) exploration of sequence-function space in enzyme families using sequence similarity networks (SSNs; EFI-EST), (2) easy access to genome context for bacterial, archaeal, and fungal proteins in the SSN clusters so that isofunctional families can be identified and their functions inferred from genome context (EFI-GNT); and (3) determination of the abundance of SSN clusters in NIH Human Metagenome Project metagenomes using chemically guided functional profiling (EFI-CGFP). We describe enhancements that enable SSNs to be generated from taxonomy categories, allowing higher resolution analyses of sequence-function space; we provide examples of the generation of taxonomy category-specific SSNs.


Asunto(s)
Bases de Datos Genéticas , Enzimas , Internet , Humanos , Bacterias/enzimología , Bacterias/genética , Genómica , Metagenoma , Enzimas/química , Enzimas/genética , Archaea/enzimología , Archaea/genética , Hongos/enzimología , Hongos/genética
6.
World J Microbiol Biotechnol ; 39(7): 194, 2023 May 12.
Artículo en Inglés | MEDLINE | ID: mdl-37169980

RESUMEN

Terpenes and terpenoids are a group of isoprene-derived molecules that constitute the largest group of natural products and secondary metabolites produced by living things, with more than 25,000 compounds reported. These compounds are synthesized by enzymes called terpene synthases, which include several families of cyclases and enzymes. These are responsible for adding functional groups to cyclized structures. Fungal terpenoids are of great interest for their pharmacological properties; therefore, understanding the mechanisms that regulate their synthesis (regulation of the mevalonate pathway, regulation of gene expression, and availability of cofactors) is essential to direct their production. For this reason, this review addresses the detailed study of the biosynthesis of fungal terpenoids and their regulation by various physiological and environmental factors.


Asunto(s)
Transferasas Alquil y Aril , Proteínas Fúngicas , Hongos , Terpenos , Terpenos/metabolismo , Hongos/enzimología , Transferasas Alquil y Aril/metabolismo , Proteínas Fúngicas/metabolismo
7.
Sci Rep ; 13(1): 1417, 2023 01 25.
Artículo en Inglés | MEDLINE | ID: mdl-36697464

RESUMEN

We report here a new application, CustomProteinSearch (CusProSe), whose purpose is to help users to search for proteins of interest based on their domain composition. The application is customizable. It consists of two independent tools, IterHMMBuild and ProSeCDA. IterHMMBuild allows the iterative construction of Hidden Markov Model (HMM) profiles for conserved domains of selected protein sequences, while ProSeCDA scans a proteome of interest against an HMM profile database, and annotates identified proteins using user-defined rules. CusProSe was successfully used to identify, in fungal genomes, genes encoding key enzyme families involved in secondary metabolism, such as polyketide synthases (PKS), non-ribosomal peptide synthetases (NRPS), hybrid PKS-NRPS and dimethylallyl tryptophan synthases (DMATS), as well as to characterize distinct terpene synthases (TS) sub-families. The highly configurable characteristics of this application makes it a generic tool, which allows the user to refine the function of predicted proteins, to extend detection to new enzymes families, and may also be applied to biological systems other than fungi and to other proteins than those involved in secondary metabolism.


Asunto(s)
Hongos , Anotación de Secuencia Molecular , Metabolismo Secundario , Programas Informáticos , Secuencia de Aminoácidos , Anotación de Secuencia Molecular/métodos , Péptido Sintasas/genética , Sintasas Poliquetidas/genética , Metabolismo Secundario/genética , Hongos/enzimología , Hongos/genética , Triptófano Sintasa/genética , Secuencia Conservada/genética
8.
Braz. j. biol ; 83: 1-12, 2023. tab
Artículo en Inglés | LILACS, VETINDEX | ID: biblio-1468876

RESUMEN

Organo-mineral fertilizers supplemented with biological additives are an alternative to chemical fertilizers. In this study, thermoresistant microorganisms from composting mass were isolated by two-step procedures. First, samples taken at different time points and temperatures (33 days at 52 ºC, 60 days at 63 ºC, and over 365 days at 26 ºC) were pre-incubated at 80 oC for 30 minutes. Second, the microbial selection by in vitro culture-based methods and heat shock at 60 oC and 100 oC for 2h and 4h. Forty-one isolates were able to grow at 60 °C for 4h; twenty-seven at 100 °C for 2h, and two at 100 °C for 4h. The molecular identification by partial sequencing of the 16S ribosomal gene using universal primers revealed that thirty-five isolates were from eight Bacillus species, one Brevibacillus borstelensis, three Streptomyces thermogriseus, and two fungi (Thermomyces lanuginosus and T. dupontii). Data from amylase, phytase, and cellulase activity assays and the enzymatic index (EI) showed that 38 of 41 thermo-resistant isolates produce at least one enzyme. For amylase activity, the highest EI value was observed in Bacillus licheniformis (isolate 21C2, EI= 4.11), followed by Brevibacillus borstelensis (isolate 6C2, EI= 3.66), Bacillus cereus (isolate 18C2, EI= 3.52), and Bacillus paralicheniformis (isolate 20C2, EI= 3.34). For phytase, the highest EI values were observed for Bacillus cereus (isolate 18C2, EI= 2.30) and Bacillus licheniformis (isolate 3C1, EI= 2.15). Concerning cellulose production, B. altitudinis (isolate 6C1) was the most efficient (EI= 6.40), followed by three Bacillus subtilis (isolates 9C1, 16C2, and 19C2) with EI values of 5.66, 5.84, and 5.88, respectively, and one B. pumilus (isolate 27C2, EI= 5.78). The selected microorganisms are potentially useful as a biological additive in organo-mineral fertilizers and other biotechnological processes.


Os fertilizantes organo-minerais suplementados com aditivos biológicos são uma alternativa aos adubos químicos. Neste estudo, microrganismos termoresistentes foram isolados de compostagem por procedimentos de duas etapas. Inicialmente, as amostras tomadas em diferentes períodos e temperaturas (33 dias a 52 ºC, 60 dias a 63 ºC e mais de 365 dias a 26 ºC) foram pré-incubadas a 80 oC por 30 minutos. Posteriormente, a seleção microbiana foi conduzida por métodos baseados em cultura in vitro e choque térmico a 60 oC e 100 oC por 2h e 4h. Quarenta e um isolados foram capazes de crescer a 60 °C por 4h; vinte e sete a 100 °C por 2h e dois a 100 °C por 4h. A identificação molecular por sequenciamento parcial do gene ribossomal 16S usando primers universais revelou que trinta e cinco isolados eram de oito espécies de Bacillus, um Brevibacillus borstelensis, três Streptomyces thermogriseus e dois fungos (Thermomyces lanuginosus e T. dupontii). Os dados dos ensaios de atividade de amilase, fitase e celulase e o índice enzimático (IE) mostraram que 38 dos 41 isolados termorresistentes produziram pelo menos uma enzima. Para a atividade da amilase, o maior valor de IE foi observado em Bacillus licheniformis (isolado 21C2, IE = 4,11), seguido por Brevibacillus borstelensis (isolado 6C2, IE = 3,66), Bacillus cereus (isolado 18C2, IE = 3,52) e Bacillus paralicheniformis (isolado 20C2, IE = 3,34). Para a fitase, os maiores valores de IE foram observados para B. cereus (isolado 18C2, IE = 2,30) e B. licheniformis (isolado 3C1, IE = 2,15). Em relação à produção de celulose, B. altitudinis (isolado 6C1) foi o mais eficiente (IE = 6,40), seguido por três Bacillus subtilis (isolados 9C1, 16C2 e 19C2) com valores de IE de 5,66, 5,84 e 5,88, respectivamente, e um B. pumilus (isolado 27C2, IE = 5,78). Pode-se inferir que os microrganismos selecionados são potencialmente úteis como aditivos biológicos em fertilizantes organo-minerais e outros processos biotecnológicos.


Asunto(s)
Bacillus , Brevibacillus/enzimología , Compuestos Orgánicos , Hongos/enzimología , Microbiota/genética , /ultraestructura , Streptomyces/enzimología
9.
J Biol Chem ; 298(5): 101827, 2022 05.
Artículo en Inglés | MEDLINE | ID: mdl-35293315

RESUMEN

Carbohydrate-active enzymes are involved in the degradation, biosynthesis, and modification of carbohydrates and vary with the diversity of carbohydrates. The glycoside hydrolase (GH) family 31 is one of the most diverse families of carbohydrate-active enzymes, containing various enzymes that act on α-glycosides. However, the function of some GH31 groups remains unknown, as their enzymatic activity is difficult to estimate due to the low amino acid sequence similarity between characterized and uncharacterized members. Here, we performed a phylogenetic analysis and discovered a protein cluster (GH31_u1) sharing low sequence similarity with the reported GH31 enzymes. Within this cluster, we showed that a GH31_u1 protein from Lactococcus lactis (LlGH31_u1) and its fungal homolog demonstrated hydrolytic activities against nigerose [α-D-Glcp-(1→3)-D-Glc]. The kcat/Km values of LlGH31_u1 against kojibiose and maltose were 13% and 2.1% of that against nigerose, indicating that LlGH31_u1 has a higher specificity to the α-1,3 linkage of nigerose than other characterized GH31 enzymes, including eukaryotic enzymes. Furthermore, the three-dimensional structures of LlGH31_u1 determined using X-ray crystallography and cryogenic electron microscopy revealed that LlGH31_u1 forms a hexamer and has a C-terminal domain comprising four α-helices, suggesting that it contributes to hexamerization. Finally, crystal structures in complex with nigerooligosaccharides and kojibiose along with mutational analysis revealed the active site residues involved in substrate recognition in this enzyme. This study reports the first structure of a bacterial GH31 α-1,3-glucosidase and provides new insight into the substrate specificity of GH31 enzymes and the physiological functions of bacterial and fungal GH31_u1 members.


Asunto(s)
Bacterias/enzimología , Hongos/enzimología , Glucosidasas , Glicósido Hidrolasas , Secuencia de Aminoácidos , Bacterias/metabolismo , Microscopía por Crioelectrón , Cristalografía por Rayos X , Hongos/metabolismo , Glucosidasas/metabolismo , Glicósido Hidrolasas/metabolismo , Lactococcus lactis/enzimología , Lactococcus lactis/metabolismo , Modelos Moleculares , Oligosacáridos/metabolismo , Filogenia , Especificidad por Sustrato
10.
J Enzyme Inhib Med Chem ; 37(1): 986-993, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-35322729

RESUMEN

The enormous burden of the COVID-19 pandemic in economic and healthcare terms has cast a shadow on the serious threat of antimicrobial resistance, increasing the inappropriate use of antibiotics and shifting the focus of drug discovery programmes from antibacterial and antifungal fields. Thus, there is a pressing need for new antimicrobials involving innovative modes of action (MoAs) to avoid cross-resistance rise. Thiosemicarbazones (TSCs) stand out due to their easy preparation and polypharmacological application, also in infectious diseases. Recently, we reported a small library of TSCs (1-9) that emerged for their non-cytotoxic behaviour. Inspired by their multifaceted activity, we investigated the antibacterial, antifungal, and antidermatophytal profiles of derivatives 1-9, highlighting a new promising research line. Furthermore, the ability of these compounds to inhibit selected microbial and human carbonic anhydrases (CAs) was assessed, revealing their possible involvement in the MoA and a good selectivity index for some derivatives.


Asunto(s)
Antiinfecciosos/farmacología , Bacterias/efectos de los fármacos , Inhibidores de Anhidrasa Carbónica/farmacología , Anhidrasas Carbónicas/metabolismo , Hongos/efectos de los fármacos , Tiosemicarbazonas/farmacología , Antiinfecciosos/síntesis química , Antiinfecciosos/química , Bacterias/enzimología , Inhibidores de Anhidrasa Carbónica/síntesis química , Inhibidores de Anhidrasa Carbónica/química , Hongos/enzimología , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Tiosemicarbazonas/síntesis química , Tiosemicarbazonas/química
11.
Appl Microbiol Biotechnol ; 106(5-6): 1813-1835, 2022 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-35254498

RESUMEN

Microbial enzymes have an indispensable role in producing foods, pharmaceuticals, and other commercial goods. Many novel enzymes have been reported from all domains of life, such as plants, microbes, and animals. Nonetheless, industrially desirable enzymes of microbial origin are limited. This review article discusses the classifications, applications, sources, and challenges of most demanded industrial enzymes such as pectinases, cellulase, lipase, and protease. In addition, the production of novel enzymes through protein engineering technologies such as directed evolution, rational, and de novo design, for the improvement of existing industrial enzymes is also explored. We have also explored the role of metagenomics, nanotechnology, OMICs, and machine learning approaches in the bioprospecting of novel enzymes. Overall, this review covers the basics of biocatalysts in industrial and healthcare applications and provides an overview of existing microbial enzyme optimization tools. KEY POINTS: • Microbial bioactive molecules are vital for therapeutic and industrial applications. • High-throughput OMIC is the most proficient approach for novel enzyme discovery. • Comprehensive databases and efficient machine learning models are the need of the hour to fast forward de novo enzyme design and discovery.


Asunto(s)
Bacterias , Bioprospección , Enzimas , Hongos , Ingeniería de Proteínas , Animales , Bacterias/enzimología , Biotecnología , Enzimas/metabolismo , Hongos/enzimología , Sector de Atención de Salud , Industrias , Metagenómica
12.
Molecules ; 27(4)2022 Feb 21.
Artículo en Inglés | MEDLINE | ID: mdl-35209232

RESUMEN

Amylomaltase is a well-known glucan transferase that can produce large ring cyclodextrins (LR-CDs) or so-called cycloamyloses via cyclization reaction. Amylomaltases have been found in several microorganisms and their optimum temperatures are generally around 60-70 °C for thermostable amylomaltases and 30-45 °C for the enzymes from mesophilic bacteria and plants. The optimum pHs for mesophilic amylomaltases are around pH 6.0-7.0, while the thermostable amylomaltases are generally active at more acidic conditions. Size of LR-CDs depends on the source of amylomaltases and the reaction conditions including pH, temperature, incubation time, and substrate. For example, in the case of amylomaltase from Corynebacterium glutamicum, LR-CD productions at alkaline pH or at a long incubation time favored products with a low degree of polymerization. In this review, we explore the synthesis of LR-CDs by amylomaltases, structural information of amylomaltases, as well as current applications of LR-CDs and amylomaltases.


Asunto(s)
Ciclodextrinas/síntesis química , Sistema de la Enzima Desramificadora del Glucógeno/química , Bacterias/enzimología , Sitios de Unión , Ciclodextrinas/química , Hongos/enzimología , Modelos Moleculares , Estructura Molecular , Unión Proteica , Conformación Proteica
13.
J Inorg Biochem ; 229: 111745, 2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35121188

RESUMEN

A conservative characteristic of manganese superoxide dismutase is the rapid formation of product inhibition at high temperatures. At lower temperatures, the enzyme is less inhibited and undergoes more catalytic fast cycles before being product-inhibited. The temperature-dependent kinetics could be rationalized by the temperature-dependent coordination in the conserved center of manganese superoxide dismutase. As temperature decreases, a water molecule (WAT2) approaches or even coordinates Mn as the sixth ligand to interfere with O2•--Mn coordination and reduce product inhibition, so the dismutation should mainly proceed in the fast outer-sphere pathway at low temperatures. Cold-activation is an adaptive response to low temperature rather than a passive adaptation to excess superoxide levels since the cold-activated dismutase activity significantly exceeds the amount of superoxide in the cell or mitochondria. Physiologically speaking, cold activation of manganese superoxide dismutase mediates cold stress signaling and transduces temperature (physical signal) degree into H2O2 fluxes (chemical signal), which in turn may act as a second messenger to induce a series of physiological responses such as cold shock.


Asunto(s)
Superóxido Dismutasa/metabolismo , Termorreceptores/metabolismo , Bacterias/enzimología , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Frío , Respuesta al Choque por Frío/fisiología , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Hongos/enzimología , Humanos , Peróxido de Hidrógeno/metabolismo , Manganeso/química , Estrés Oxidativo/fisiología , Conformación Proteica , Transducción de Señal/fisiología , Superóxido Dismutasa/química , Superóxidos/química , Superóxidos/metabolismo , Termorreceptores/química
14.
Molecules ; 27(2)2022 Jan 13.
Artículo en Inglés | MEDLINE | ID: mdl-35056804

RESUMEN

Fungal laccase obtained from a Cerrena unicolor strain was used as an effective biocatalyst for the transformation of 8-anilino-1-naphthalenesulfonic acid into a green-coloured antibacterial compound, which can be considered as both an antimicrobial agent and a textile dye, simultaneously. The process of biosynthesis was performed in buffered solutions containing methanol as a co-solvent, allowing better solubilisation of substrate. The transformation process was optimised in terms of the buffer pH value, laccase activity, and concentrations of the substrate and co-solvent. The crude product obtained exhibited low cytotoxicity, antibacterial properties against Staphylococcus aureus and Staphylococcus epidermidis, and antioxidant properties. Moreover, the synthesised green-coloured compound proved non-allergenic and demonstrated a high efficiency of dyeing wool fibres.


Asunto(s)
Naftalenosulfonatos de Anilina/metabolismo , Antibacterianos/química , Antibacterianos/farmacología , Colorantes/química , Colorantes/farmacología , Lacasa/metabolismo , Adulto , Anciano , Aliivibrio fischeri/efectos de los fármacos , Naftalenosulfonatos de Anilina/química , Antibacterianos/biosíntesis , Antibacterianos/toxicidad , Antioxidantes/química , Antioxidantes/metabolismo , Antioxidantes/farmacología , Antioxidantes/toxicidad , Biocatálisis , Línea Celular , Colon/efectos de los fármacos , Colorantes/metabolismo , Colorantes/toxicidad , Células Epiteliales/efectos de los fármacos , Femenino , Fibroblastos/efectos de los fármacos , Hongos/enzimología , Voluntarios Sanos , Humanos , Hipersensibilidad , Lacasa/química , Masculino , Persona de Mediana Edad , Oxidación-Reducción , Piel/efectos de los fármacos , Staphylococcus aureus/efectos de los fármacos , Staphylococcus epidermidis/efectos de los fármacos
15.
N Biotechnol ; 68: 19-27, 2022 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-35032710

RESUMEN

Keratinases are proteases that can catalyze the degradation of insoluble keratinous biomass. Keratinases in protease family M36 (MEROPS database) are endo-acting proteases. In total, 687 proteases are classified in family M36. In the present study, new keratinolytic enzymes were identified in protease family M36 using the bioinformatics tool Conserved Unique Peptide Patterns (CUPP). Via CUPP, M36 family members were classified into 11 groups, with CUPP group 1 containing the three currently known and sequenced family M36 keratinases (derived from the fungi Fusarium oxysporum, Microsporum canis and Onygena corvina) as well as an additional 71 uncharacterized M36 proteases. In order to assess the relevance of CUPP group 1 categorization to keratinolytic function, four uncharacterized M36 proteases and the known keratinase from F. oxysporum (in CUPP group 1) were selected for recombinant expression and keratinolytic activity assessment. The four hitherto unknown M36 proteases were from Phaeosphaeria nodorum, Aspergillus clavatus, Pseudogymnoascus pannorum and Nectria haematococca, and represent four different fungal taxonomical classes. The genes encoding the selected M36 proteases were individually expressed in Pichia pastoris and all proteases displayed keratinase activity on keratin azure. Additionally, the activity on different keratinase substrates, optimal reaction conditions and thermal stability were determined for the two most active new keratinases. The results validate the applicability of CUPP for function-based discovery of non-characterized keratinases and present new robust keratinases for potential use in keratin upgrading.


Asunto(s)
Biología Computacional , Hongos/enzimología , Péptido Hidrolasas , Endopeptidasas , Queratinas , Péptido Hidrolasas/metabolismo
16.
World J Microbiol Biotechnol ; 38(2): 30, 2022 Jan 06.
Artículo en Inglés | MEDLINE | ID: mdl-34989888

RESUMEN

Enzymes are biocatalysts that are widely used in different industries and generate billions of dollars annually. With the advancement of biotechnology, new enzymatic sources are being evaluated, especially microbial ones, in order to find efficient producers. Endophytic fungi are promising sources of biomolecules; however, Amazonian species are still poorly studied as to their enzymatic production potential. In this sense, the production of hydrolases (amylases, lipases, cellulases and pectinases) was evaluated in endophytic fungi isolated from the leaves, roots and stems of açai palms (Euterpe precatoria). A qualitative test was carried out to detect the enzymatic synthesis in each isolate, and the most promising ones were cultivated using submerged fermentation. The enzyme extracts were quantified to determine those with the greatest activity. Cellulolytic and amylolytic extracts showed the highest enzymatic activities and were partially characterized. Among 50 isolates, 82.9% produced pectinase, 58.5% produced cellulase, 31.7% produced amylase, and 12.2% produced lipase. Penicillium sp. L3 was the best producer of amylase and Colletotrichum sp. S1 was the best producer of cellulase in liquid medium cultivation. The amylolytic extract showed the highest enzymatic activity at pH 8.0 and 45 °C, and the cellulolytic extract at pH 5.0 and 35 °C. The cellulase and amylase produced by the endophytes had their molecular masses estimated between 38 and 76 kDa. These results indicate that endophytic fungi from the açai palm can be used as a new source of hydrolytic enzymes, which can be applied in numerous biotechnological processes.


Asunto(s)
Endófitos/enzimología , Endófitos/metabolismo , Euterpe/microbiología , Hongos/enzimología , Hongos/metabolismo , Amilasas/metabolismo , Biotecnología/métodos , Celulasa/metabolismo , Celulasas/metabolismo , Colletotrichum , Hongos/clasificación , Hidrólisis , Lipasa/metabolismo , Penicillium , Péptido Hidrolasas , Poligalacturonasa/metabolismo
17.
J Biomol Struct Dyn ; 40(3): 1416-1429, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-33000693

RESUMEN

Chitin synthase (CHS) is one of the crucial enzymes that play an essential role in chitin synthesis during the molting process, and it is considered to be the specific target to control insect pests. Currently, there are no potent inhibitors available in the market, which specifically target this enzyme. Pyrimidine nucleoside peptide, nikkomycin Z, binds to nucleotide-binding sites of fungal and insect CHS. But, their mode of action is still fragmentary due to the lack of a 3Dstructure of CHS. Chilo partellus is a severe pest insect of major food crops such as maize and sorghum, in an attempt to target integument expressed cuticular CpCHS. The CpChsA cDNA was cloned, and subsequently, their developmental and tissue-specific expression was studied. The 3D structure of the CHS catalytic domain was modeled, after which natural compounds were screened using a virtual screening workflow and resulted in the identification of five hit molecules. Molecular dynamics simulations were performed to investigate the dynamics and interactions of hits with CpCHS. The obtained results revealed that the compounds kasugamycin, rutin and robinin could act as potent inhibitors of CpCHS. All three molecules were observed to significantly reduce the chitin production as validated using in vitro and in vivo studies. Thus, this study aims to provide a set of novel inhibitor molecules against CpCHS for controlling the pest population. Communicated by Ramaswamy H. Sarma.


Asunto(s)
Quitina Sintasa , Clonación Molecular , Evaluación Preclínica de Medicamentos , Inhibidores Enzimáticos , Mariposas Nocturnas , Animales , Quitina Sintasa/antagonistas & inhibidores , Quitina Sintasa/genética , Quitina Sintasa/metabolismo , Simulación por Computador , Inhibidores Enzimáticos/farmacología , Hongos/enzimología , Mariposas Nocturnas/enzimología
18.
Microbiol Res ; 254: 126899, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34715448

RESUMEN

The mangrove is an ecosystem bounded by the line of the largest tide in size that occurs in climatic and subtropical regions. In this environment, microorganisms and their enzymes are involved in a series of transformations and nutrient cycling. To evaluate the biotechnological potential of fungi from a mangrove ecosystem, samples from mangrove trees were collected at the Paranaguá Estuarine Complex in Brazil and 40 fungal isolates were obtained, cultivated, and screened for hydrolytic and ligninolytic enzymes production, adaptation to salinity and genetic diversity. The results showed a predominance of hydrolytic enzymes and fungal tolerance to ≤ 50 g L-1 sodium chloride (NaCl) concentration, a sign of adaptive halophilia. Through morphological and molecular analyses, the isolates were identified as: Trichoderma atroveride, Microsphaeropsis arundinis, Epicoccum sp., Trichoderma sp., Gliocladium sp., Geotrichum sp. and Cryphonectria sp. The ligninolytic enzymatic potential of the fungi was evaluated in liquid cultures in the presence and absence of seawater and the highest activity of laccase among isolates was observed in the presence of seawater with M. arundinis (LB07), which produced 1,037 U L-1. Enzymatic extracts of M. arundinis fixed at 100 U L-1 of laccase partially decolorized a real textile effluent in a reaction without pH adjustment and chemical mediators. Considering that mangrove fungi are still few explored, the results bring an important contribution to the knowledge about these microorganisms, as their ability to adapt to saline conditions, biodegradation of pollutants, and enzymatic potential, which make them promising candidates in biotechnological processes.


Asunto(s)
Ecosistema , Hongos , Lacasa , Tolerancia a la Sal , Aguas Residuales , Hongos/enzimología , Hongos/genética , Residuos Industriales , Lacasa/genética , Lacasa/metabolismo , Textiles , Aguas Residuales/microbiología
19.
Infect Immun ; 90(1): e0039721, 2022 01 25.
Artículo en Inglés | MEDLINE | ID: mdl-34606369

RESUMEN

The human skin is our outermost layer and serves as a protective barrier against external insults. Advances in next-generation sequencing have enabled the discoveries of a rich and diverse community of microbes-bacteria, fungi, and viruses that are residents of this surface. The genomes of these microbes also revealed the presence of many secretory enzymes. In particular, proteases which are hydrolytic enzymes capable of protein cleavage and degradation are of special interest in the skin environment, which is enriched in proteins and lipids. In this minireview, we will focus on the roles of these skin-relevant microbial secreted proteases, in terms of both their widely studied roles as pathogenic agents in tissue invasion and host immune inactivation and their recently discovered roles in intermicrobial interactions and modulation of virulence factors. From these studies, it has become apparent that while microbial proteases are capable of a wide range of functions, their expression is tightly regulated and highly responsive to the environments the microbes are in. With the introduction of new biochemical and bioinformatics tools to study protease functions, it will be important to understand the roles played by skin microbial secretory proteases in cutaneous health, especially the less studied commensal microbes with an emphasis on contextual relevance.


Asunto(s)
Endopeptidasas , Interacciones Microbiota-Huesped , Microbiota , Piel/microbiología , Factores de Virulencia , Bacterias/enzimología , Biomarcadores , Susceptibilidad a Enfermedades , Hongos/enzimología , Interacciones Huésped-Patógeno , Humanos
20.
Biomed Pharmacother ; 146: 112523, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-34902742

RESUMEN

Four types of antifungal drugs are available that include inhibitors of ergosterol synthesis, of fungal RNA biosynthesis, and of cell wall biosynthesis as well as physiochemical regulators of fungal membrane sterols. Increasing resistance to antifungal drugs can severely limit treatment options of fungal nail infections, vaginal candidiasis, ringworm, blastomycosis, histoplasmosis, and Candida infections of the mouth, throat, and esophagus, among other infections. Development of strategies focused on new fungicides can effectively help tackle troublesome fungal diseases. The virulence and optimal growth of fungi depend on various extracellular secreted factors, among which proteases, such as serine proteases, are of particular interest. A specific extracellular proteolytic system enables fungi to survive and penetrate the tissues. Given the role of fungal proteases in infection, any molecule capable of selectively and specifically inhibiting their activity can lead to the development of potential drugs. Owing to their specific mode of action, fungal protease inhibitors can avoid fungal resistance observed with currently available treatments. Although fungal secreted proteases have been extensively studied as potential virulence factors, our understanding of the substrate specificity of such proteases remains poor. In this review, we summarize the recent advances in the design and development of specific serine protease inhibitors and provide a brief history of the compounds that inhibit fungal serine protease activity.


Asunto(s)
Antifúngicos , Micosis , Inhibidores de Serina Proteinasa , Antifúngicos/farmacología , Antifúngicos/uso terapéutico , Hongos/efectos de los fármacos , Hongos/enzimología , Humanos , Micosis/tratamiento farmacológico , Serina Proteasas , Inhibidores de Serina Proteinasa/farmacología , Inhibidores de Serina Proteinasa/uso terapéutico
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