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1.
J Biol Chem ; 300(9): 107609, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39074634

RESUMEN

ADP-ribosylation (ADPRylation) is a post-translational modification (PTM) of proteins mediated by the activity of a variety of ADP-ribosyltransferase (ART) enzymes, such as the Poly (ADP-ribose) Polymerase (PARP) family of proteins. This PTM is diverse in both form and biological functions, which makes it a highly interesting modification, but difficult to study due to limitations in reagents available to detect the diversity of ADPRylation. Recently we developed a set of recombinant antibody-like ADP-ribose (ADPR) binding proteins using naturally occurring ADPR binding domains (ARBDs), including macrodomains and WWE domains, functionalized by fusion to the constant "Fc" region of rabbit immunoglobulin. Herein, we present an expansion of this biological toolkit, where we have replaced the rabbit Fc sequence with the sequence from two other species, mouse and goat. These new reagents are based on a previously characterized set of naturally occurring ARBDs with known specificity. Characterization of the new reagents demonstrates that they can be detected in a species-dependent manner by secondary immunological tools, recognize specific ADPR moieties, and can be used for simultaneous detection of mono ADPR and poly ADPR at single-cell resolution in various antibody-based assays. The expansion of this toolkit will allow for more multiplexed assessments of the complexity of ADPRylation biology in many biological systems.


Asunto(s)
Adenosina Difosfato Ribosa , Animales , Ratones , Adenosina Difosfato Ribosa/metabolismo , Conejos , Poli Adenosina Difosfato Ribosa/metabolismo , Poli Adenosina Difosfato Ribosa/química , Proteínas Recombinantes/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/análisis , Cabras , ADP-Ribosilación , Procesamiento Proteico-Postraduccional , Humanos
2.
Mikrochim Acta ; 191(8): 490, 2024 07 27.
Artículo en Inglés | MEDLINE | ID: mdl-39066900

RESUMEN

A 3D-printed stereolithographic platform for selective biorecognition is designed to enable convective microscale affinity extraction of microcystin-LR (MC-LR) followed by direct solid-phase optosensing exploiting ratiometric front-face fluorescence spectroscopy. For this purpose, a recombinant monoclonal plantibody (recAb) is covalently attached to a 3D-printed structure for sorptive immunoextraction, whereupon the free and unbound primary amino moieties of the recAb are derivatized with a fluorescent probe. The fluorophore-recAb-MC-LR laden device is then accommodated in the cuvette holder of a conventional fluorometer without any instrumental modification for the recording of the solid-phase fluorescence emission. Using Rodbard's four-parameter sigmoidal function, the 3D-printed bioselective platform features a limit of detection (LOD) of 28 ng L-1 using a sample volume of 500 mL, device-to-device reproducibility down to 12%, and relative recoveries ranging from 91 to 100% in marine waters. Printed prototypes are affordable, just 0.4 € per print and ≤ 10 € per device containing recAb. One of the main assets of the miniaturized immunoextraction device is that it performs comparably well in terms of analytical figures of merit with costly mass spectrometric-based analytical methodologies, such as HPLC-MS/MS. The device is readily applicable to high-matrix samples, such as seawater, as opposed to previous biosensing platforms, just applied to freshwater systems.


Asunto(s)
Toxinas Marinas , Microcistinas , Impresión Tridimensional , Agua de Mar , Espectrometría de Fluorescencia , Microcistinas/análisis , Toxinas Marinas/análisis , Espectrometría de Fluorescencia/métodos , Agua de Mar/química , Agua de Mar/análisis , Límite de Detección , Colorantes Fluorescentes/química , Anticuerpos Monoclonales/inmunología , Anticuerpos Monoclonales/química , Proteínas Recombinantes/análisis
3.
Anal Methods ; 16(24): 3917-3926, 2024 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-38832468

RESUMEN

The titer of recombinant proteins is one of the key parameters in biopharmaceutical manufacturing processes. The fluorescence polarization (FP)-based assay, a homogeneous, high-throughput and real-time analytical method, had emerged as a powerful tool for biochemical analysis and environmental monitoring. In this study, an FP-based bioassay was utilized to quantify antibody fragment crystallizable (Fc)-containing proteins, such as recombinant monoclonal antibodies (mAbs) and mAb derivatives, in the cell culture supernatant, and the impacts of tracer molecular weight and FITC-coupling conditions on fluorescence polarization were methodically examined. Distinct from the fluorescence polarization potency calculated by classical formula, we for the first time proposed a new concept and calculation of fluorescence polarization intensity, based on which an analytical method with broader detection range and analysis window was established for quantifying Fc-containing proteins. This provided new ideas for the practical application of fluorescence polarization theory. The established method could detect 96 samples within 30 minutes, with dynamic titer range of 2.5-400 mg L-1, and a linear fitting R2 between the measured and actual concentration reaching 0.99. The method had great application prospects in determining the titer of recombinant proteins with Fc fragments, especially when applied to large-scale screening of high-yield and stable expression CHO cell lines commonly used in biopharmaceutical industry.


Asunto(s)
Anticuerpos Monoclonales , Cricetulus , Polarización de Fluorescencia , Ensayos Analíticos de Alto Rendimiento , Fragmentos Fc de Inmunoglobulinas , Proteínas Recombinantes , Proteínas Recombinantes/química , Proteínas Recombinantes/análisis , Células CHO , Polarización de Fluorescencia/métodos , Anticuerpos Monoclonales/inmunología , Anticuerpos Monoclonales/química , Ensayos Analíticos de Alto Rendimiento/métodos , Fragmentos Fc de Inmunoglobulinas/química , Bioensayo/métodos , Animales
4.
Anal Methods ; 16(22): 3475-3485, 2024 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-38780482

RESUMEN

Sialylation is an important modification of proteins, related to protein life and bioactivity. However, the evaluation of sialylation is only based on the average molecular composition by peptide mapping and glycan profiling because sialylated proteins are usually too heterogeneous to obtain good quality mass spectra by conventional intact mass analysis methods. In this study, a simple strong cation exchange-mass spectroscopy (SCX-MS) method was developed for intact mass analysis of sialylated glycoproteins. The developed SCX-MS method provided good separation for sialylated glycoproteins and had an inherent characteristic of native MS. Thus, the intact mass analysis of highly heterogeneous glycoprotein, which cannot be obtained by reversed-phase liquid chromatography (RPLC)-MS and size exclusion chromatography (SEC)-MS methods, can be well analyzed using the current SCX-MS method. First, the method was developed and optimized using the etanercept monomer. Conditions including MS parameters, flow rate, and gradient were investigated. Then, the developed method was used to analyze a new recombinant vaccine, protein 1. Similar to the etanercept monomer, the intact molecular information of protein 1, which cannot be obtained by RPLC-MS and SEC-MS, can be achieved using SCX-MS. Combined with information obtained on peptide mapping and glycan profiles obtained by LC-MS, the new vaccine was well characterized. Finally, the SCX-MS method was used to quickly evaluate the batch-to-batch reproducibility of protein 1. It was much faster than peptide mapping and glycan profiling methods and can provide information complementary to these strategies. It should be useful for many applications where speed and comprehensive characterization are required, such as recombinant sialylated vaccines and fusion proteins.


Asunto(s)
Glicoproteínas , Espectrometría de Masas , Glicoproteínas/química , Glicoproteínas/análisis , Espectrometría de Masas/métodos , Cromatografía por Intercambio Iónico/métodos , Etanercept/química , Glicosilación , Ácido N-Acetilneuramínico/química , Ácido N-Acetilneuramínico/análisis , Humanos , Animales , Cationes/química , Proteínas Recombinantes/química , Proteínas Recombinantes/análisis
5.
Clin Chem Lab Med ; 62(10): 2001-2010, 2024 Sep 25.
Artículo en Inglés | MEDLINE | ID: mdl-38456740

RESUMEN

OBJECTIVES: The effect of preanalytical and analytical factors on the α-synuclein (α-syn) seed amplification assay's (SAA) performance has not been fully explored. Similarly, there is limited knowledge about the most suitable assay protocol and kinetic parameters for misfolded α-syn seed quantification. METHODS: We studied the effect of centrifugation, repeated freeze-thaw cycles (up to seven), delayed freezing, detergent addition, and blood contamination on the performance of the cerebrospinal fluid (CSF) α-syn SAA real-time quaking-induced conversion (RT-QuIC). Moreover, we analysed the inter- and intra-plate variability, the recombinant protein batch effect, and the RT-QuIC parameters' variability when multiple samples were run in controlled conditions. Finally, we evaluated the assay potential of quantifying α-syn seed by assessing kinetic curves in serial CSF dilutions. RESULTS: Among tested preanalytical variables, a ≥0.01 % blood contamination and adding detergents significantly affected the RT-QuIC kinetic parameters and the number of positive replicates. Increasing the number of replicates improved result reproducibility. The number of positive replicates in serially diluted CSF samples improved discrimination between samples with high and low seeding activity, and the time to threshold (LAG) was the most reliable kinetic parameter in multiple experiment settings. CONCLUSIONS: Preanalytical variables affecting α-syn RT-QuIC performance are limited to blood contamination and detergent addition. The number of positive replicates and the LAG are the most reliable variables for quantifying α-syn seeding activity. Their consistent measurement in serial dilution experiments, especially when associated with an increased number of sample replicates, will help to develop the α-syn RT-QuIC assay further into a quantitative test.


Asunto(s)
alfa-Sinucleína , alfa-Sinucleína/líquido cefalorraquídeo , Humanos , Reproducibilidad de los Resultados , Cinética , Proteínas Recombinantes/análisis
6.
J Pharm Biomed Anal ; 244: 116122, 2024 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-38547651

RESUMEN

The objective of this current study is to establish a single method for potency and related proteins analysis of human insulin formulations using reverse-phase high performance liquid (RP-HPLC) chromatography technique which was validated and verified for the potency analysis in insulin formulations. Chromatographic separation was achieved using an octadecylsilane (C-18) stationary phase and a mobile phase composed of 55% (v/v) buffer (0.2 M sodium sulfate in water, {pH 2.3}) and 45% (v/v) acetonitrile. Detection was performed by UV detector at 214 nm with a flow rate of 1 ml/min and an injection volume of 20 µL, at 40°C. Currently there are separate methods available in Indian Pharmacopoeia for analysis of Potency and Related proteins in human insulin. We have validated a single method where quantitation of potency and related proteins can be performed in the same run. The method validation exhibited linearity over the concentration range of 0.08-4.5 mg/ml (r2=0.999) with limit of detection of 0.094 mg/ml The accuracy of the method was 99-102.8%. Thus, it is proposed that both potency and related proteins in insulin formulations can be precisely evaluated using a single run thus saving the time and cost for quality analysis of insulin preparations both at manufacturing and regulatory laboratories which in turn will increase the market availability of such standard quality insulin preparations for public health use.


Asunto(s)
Insulina , Cromatografía Líquida de Alta Presión/métodos , Humanos , Insulina/análisis , Reproducibilidad de los Resultados , Cromatografía de Fase Inversa/métodos , Límite de Detección , Química Farmacéutica/métodos , Proteínas Recombinantes/análisis , Hipoglucemiantes/análisis , Hipoglucemiantes/química
7.
Anal Bioanal Chem ; 416(4): 913-923, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38117323

RESUMEN

Heat shock protein 90α (HSP90α) has been regarded as an important indicator for judging tumor metastasis and prognosis due to its significant upregulation in various tumors. Therefore, the accurate quantification of HSP90α is of great significance for clinical diagnosis and therapy of cancers. However, the lack of HSP90α certified reference material (CRM) leads to the accuracy and consistency of quantification methods not being effectively evaluated. Besides, quantitative results without traceability make comparisons between different studies difficult. In this study, an HSP90α solution CRM was developed from the recombinant protein raw material. The recombinant protein is a dimer, and the purity of the CRM candidate reached 96.71%. Both amino acid analysis-isotope dilution mass spectrometry (AAA-IDMS) and unique peptide analysis-isotope dilution mass spectrometry (UPA-IDMS) were performed to measure the content of HSP90α in the solution CRM candidate, and the certified value was assessed to be 66.2 ± 8.8 µg/g. Good homogeneity of the CRM was identified, and the stability examination suggested that the CRM was stable for at least 4 months at - 80 °C and for 7 days at 4 °C. With traceability to SI unit (kg), this CRM has potential to help establish a metrological traceability chain for quantification of HSP90α, which will make the quantification results standardized and comparable regardless of the quantitative methods.


Asunto(s)
Isótopos , Neoplasias , Estándares de Referencia , Espectrometría de Masas/métodos , Calibración , Proteínas Recombinantes/análisis , Neoplasias/diagnóstico
8.
Int J Mol Sci ; 24(13)2023 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-37445764

RESUMEN

Lactococcus lactis displaying recombinant proteins on its surface can be used as a potential drug delivery vector in prophylactic medication and therapeutic treatments for many diseases. These applications enable live-cell mucosal and oral administration, providing painless, needle-free solutions and triggering robust immune response at the site of pathogen entry. Immunization requires quantitative control of antigens and, ideally, a complete understanding of the bacterial processing mechanism applied to the target proteins. In this study, we propose a double-labeling method based on a conjugated dye specific for a recombinantly introduced polyhistidine tag (to visualize surface-exposed proteins) and a membrane-permeable dye specific for a tetra-cysteine tag (to visualize cytoplasmic proteins), combined with a method to block the labeling of surface-exposed tetra-cysteine tags, to clearly obtain location-specific signals of the two dyes. This allows simultaneous detection and quantification of targeted proteins on the cell surface and in the cytoplasm. Using this method, we were able to detect full-length peptide chains for the model proteins HtrA and BmpA in L. lactis, which are associated with the cell membrane by two different attachment modes, and thus confirm that membrane-associated proteins in L. lactis are secreted using the Sec-dependent post-translational pathway. We were able to quantitatively follow cytoplasmic protein production and accumulation and subsequent export and surface attachment, which provides a convenient tool for monitoring these processes for cell surface display applications.


Asunto(s)
Proteínas Bacterianas , Lactococcus lactis , Proteínas de la Membrana , Proteínas Recombinantes , Coloración y Etiquetado , Proteínas de la Membrana/análisis , Proteínas de la Membrana/biosíntesis , Proteínas Bacterianas/análisis , Proteínas Bacterianas/biosíntesis , Lactococcus lactis/química , Proteínas Recombinantes/análisis , Proteínas Recombinantes/biosíntesis , Coloración y Etiquetado/métodos , Histidina , Permeabilidad de la Membrana Celular
9.
J Proteome Res ; 22(3): 826-836, 2023 03 03.
Artículo en Inglés | MEDLINE | ID: mdl-36763563

RESUMEN

In this study, several chromatographic sorbents: porous graphitic carbon (PGC), aminopropyl hydrophilic interaction (aminopropyl-HILIC), and phenylboronic acid (PBA) were assessed for the analysis of glycopeptides by on-line solid-phase extraction capillary electrophoresis mass spectrometry (SPE-CE-MS). As the PBA sorbent provided the most promising results, a PBA-SPE-CE-MS method was developed for the selective and sensitive preconcentration of glycopeptides from enzymatic digests of glycoproteins. Recombinant human erythropoietin (rhEPO) was selected as the model glycoprotein and subjected to enzymatic digestion with several proteases. The tryptic O126 and N83 glycopeptides from rhEPO were targeted to optimize the methodology. Under the optimized conditions, intraday precision, linearity, limits of detection (LODs), and microcartridge lifetime were evaluated, obtaining improved results compared to that from a previously reported TiO2-SPE-CE-MS method, especially for LODs of N-glycopeptides (up to 500 times lower than by CE-MS and up to 200 times lower than by TiO2-SPE-CE-MS). Moreover, rhEPO Glu-C digests were also analyzed by PBA-SPE-CE-MS to better characterize N24 and N38 glycopeptides. Finally, the established method was used to analyze two rhEPO products (EPOCIM and NeuroEPO plus), demonstrating its applicability in biopharmaceutical analysis. The sensitivity of the proposed PBA-SPE-CE-MS method improves the existing CE-MS methodologies for glycopeptide analysis and shows a great potential in glycoprotein analysis to deeply characterize protein glycosites even at low concentrations of the protein digest.


Asunto(s)
Eritropoyetina , Glicopéptidos , Humanos , Electroforesis Capilar/métodos , Eritropoyetina/metabolismo , Glicopéptidos/análisis , Glicoproteínas , Espectrometría de Masas/métodos , Proteínas Recombinantes/análisis , Extracción en Fase Sólida/métodos
10.
J Pharm Biomed Anal ; 224: 115188, 2023 Feb 05.
Artículo en Inglés | MEDLINE | ID: mdl-36469998

RESUMEN

Recombinant human growth hormone (rhGH) is a peptide comprising 191 amino acids, that is mainly used to promote the growth of children and plays an important antiaging role. In the present study, a simple and sensitive quantitation method for rhGH in rat plasma was established by LCMS/MS. After simple and rapid enzymatic digestion of the plasma sample, two suitable surrogate peptides (LFDNAMLR and FPTIPLSR) were selected for quantitative analysis. The results showed good linearity over calibration range 10-2000 ng/mL. The quality control (QC) accuracy ranged from -13.8 to 14.3%, and the accuracy of the lower limit of quantification (LLOQ) ranged from -12.9 to 19.0%. The intra-day and inter-day precision ranges for all QCs were 1.7-13.6% and 4.0-7.0%, respectively. The method was successfully applied to intravenous and subcutaneous pharmacokinetic studies in rats. In comparison with previously published methods, our method features simple sample preparation combined with a short sample processing time (3.5 h), wide linear range (10-2000 ng/mL), small plasma volume (35 µL), and LLOQ (10 ng/mL).


Asunto(s)
Hormona de Crecimiento Humana , Animales , Humanos , Ratas , Cromatografía Liquida/métodos , Hormona de Crecimiento Humana/análisis , Hormona de Crecimiento Humana/sangre , Control de Calidad , Reproducibilidad de los Resultados , Espectrometría de Masas en Tándem/métodos , Proteínas Recombinantes/análisis , Proteínas Recombinantes/sangre
11.
Artículo en Inglés | MEDLINE | ID: mdl-35139473

RESUMEN

N-glycosylation is one of the major post-translational modifications, with significant effects on the mechanism of action, the efficacy, and the safety of antibody drugs or glycoproteins. With the growing application of therapeutic antibodies, routinely monitoring N-glycosylation becomes increasingly important during cell culture process development and quality control. However, the current pretreatment methods for N-glycan analysis are time- and labor-consuming. The purification procedure of enzymatically released glycans could also partly affect the accuracy of results due to its complexity. In this study, a rapid ultra-high performance liquid chromatography method based on magnetic bead extraction and 2-AB fluorescent labeling was developed and compared against three popular pretreatment methods for N-glycan profiling (two were solid phase extraction and the other was acetone precipitation). The method's repeatability results showed that magnetic bead extraction has higher precision (% relative standard deviation (RSD), 0.121.06%) than solid phase extraction (SPE) (%RSD, 0.38-8.02%) and acetone precipitation (%RSD, 0.42-8.58%). This robust pretreatment method also maximized the retention of some low abundance oligosaccharides, and may thus provide a rapid and high-throughput workflow option for N-Glycan analysis in the biopharmaceutical industry.


Asunto(s)
Anticuerpos Monoclonales/química , Cromatografía Líquida de Alta Presión/métodos , Polisacáridos , Proteínas Recombinantes/química , Anticuerpos Monoclonales/análisis , Imanes , Polisacáridos/análisis , Polisacáridos/química , Proteínas Recombinantes/análisis , Proteínas Recombinantes/normas , Reproducibilidad de los Resultados , Extracción en Fase Sólida
12.
Biotechnol Bioeng ; 119(2): 550-565, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-34821376

RESUMEN

Environmental growth-inhibition conditions (GICs) have been used extensively for increasing cell-specific productivity (qP ) of Chinese hamster ovary (CHO) cells, with the most common being temperature downshift and sodium butyrate (NaBu) treatment. B lymphocyte-induced maturation protein-1 (BLIMP1) overexpression in CHO cells can also inhibit cell growth and increase product titers and qP . Given the similar responses, this study evaluated the individual and combined effects of BLIMP1 expression, low temperature, and NaBu treatment on culture performance, cell metabolism, and recombinant protein production of CHO cells. As expected, all three interventions decreased cell growth, arrested cells in G1/G0 cell cycle phase, and increased qP . However, CHO cells presented different responses when considering cell viability, recombinant gene expression, and cell metabolism that indicated differences in the molecular loci by which BLIMP1 and GICs generated higher productivities. Combinations of BLIMP1 expression and GICs acted synergistically to inhibit cell growth and maximize r-protein production, with the BLIMP1/NaBu condition leading to the most significant improvements in product titers and qP . This latter condition also proved to substantially increase product yields (up to 9.8 g immunoglobulin G1 [IgG1]/L and 2.2 g erythropoietin-Fc [EPO-Fc]/L) and qP (up to 179 pg/cell/day [pcd] for IgG1 and 30 pcd for EPO-Fc) in high-density perfusion cultures. These findings offered mechanistic insights about the productivity-enhancing effects of BLIMP1 and GICs, as well as their complementarity for generating highly productive processes.


Asunto(s)
Técnicas de Cultivo Celular por Lotes/métodos , Ingeniería Celular/métodos , Proteínas Recombinantes , Animales , Ácido Butírico/química , Células CHO , Proliferación Celular/genética , Supervivencia Celular , Cricetinae , Cricetulus , Medios de Cultivo , Metabolómica/métodos , Factor 1 de Unión al Dominio 1 de Regulación Positiva/genética , Factor 1 de Unión al Dominio 1 de Regulación Positiva/metabolismo , Proteínas Recombinantes/análisis , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
13.
Drug Test Anal ; 14(4): 676-689, 2022 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-34898016

RESUMEN

The proteotypic human EPO peptides YLLEAK (T4), SLTTLLR (T11), TITADTFR (T14), and VYSNFLR (T17) are often used to confirm the presence of recombinant human EPO (rhEPO) in equine samples. Each of these peptides contains one or more isomeric leucine or isoleucine amino acids, raising the possibility that a simple leucine/isoleucine substitution could lead to a false identification when compared with a rhEPO reference standard. To examine this possibility variants of these four peptides were analysed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). These studies indicate that confirmation of rhEPO in equine samples by immuno-affinity capture and LC-MS/MS analysis is true and accurate. It was also found that chromatography played a greater role in determining LC-MS/MS specificity than tandem mass spectrometry and that, in the case of more hydrophilic peptides, the accuracy of peptide identification could be enhanced by the inclusion of 13 C and 15 N labelled peptide internal standards.


Asunto(s)
Eritropoyetina , Espectrometría de Masas en Tándem , Animales , Cromatografía Liquida/métodos , Eritropoyetina/análisis , Caballos , Humanos , Isoleucina , Leucina , Proteínas Recombinantes/análisis , Espectrometría de Masas en Tándem/métodos
14.
Cell Chem Biol ; 29(1): 120-132.e4, 2022 01 20.
Artículo en Inglés | MEDLINE | ID: mdl-34739851

RESUMEN

Recombinant immunoglobulin G (IgG) aggregates are formed during their production. However, the process underlying intracellular/extracellular aggregation in cell culture conditions is not well understood, and no effective method exists to assess IgG aggregates. Here, we establish an approach to detect intracellular aggregates using AF.2A1, a small artificial protein that binds to non-native IgG conformers and aggregates. Fluorescent-labeled AF.2A1 is prepared via conjugation and transfected into antibody-producing Chinese hamster ovary (CHO) cells. Micrographic images show intracellular IgG aggregates in CHO cells. The relative amount of intracellular aggregates (versus total intracellular IgG) differed depending on the type of additives used during cell culture. Interestingly, the relative amount of intracellular aggregates moderately correlates with that of in vitro extracellular IgG aggregates, suggesting they are secreted. This method will allow the investigation of antibody aggregation in cells, and may guide the production of therapeutic antibodies with high yield/quality.


Asunto(s)
Inmunoglobulina G/análisis , Animales , Células CHO , Cricetulus , Inmunoglobulina G/metabolismo , Agregado de Proteínas , Unión Proteica , Proteínas Recombinantes/análisis , Proteínas Recombinantes/metabolismo
15.
Biotechnol Bioeng ; 119(1): 299-314, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-34713893

RESUMEN

This paper presents a straightforward approach for measuring and quantifying orthogonality directly in complex cell culture fluids (CCFs) without the requirement for tracking the retention behaviors of large sets of proteins. Null-producing CCFs were fractionated using linear salt gradients at constant pH on a set of multimodal resins. Fractions were then analyzed by ultraperformance-reversed phase liquid chromatography and the resulting chromatograms provided host cell protein (HCP) "fingerprints." Using these fingerprints, an inner product vector-based approach was employed to quantify the degree of orthogonality between pairs of resins and operating conditions for these large HCP protein sets. To compare resin orthogonality behavior in different expression systems, the Chinese hamster ovary and Pichia pastoris null-producing CCFs were examined. Orthogonality in multimodal systems was found to strongly depend on the expression system and the HCPs being screened. We also identified several unexpected pairs of multimodal resins within the same family that exhibited significant orthogonality. Furthermore, "self-orthogonality" was evaluated between resins operated at different pHs, and important operating regimes were identified for maximizing orthogonal selectivities. The framework developed in this paper for calculating orthogonality without the need for labor-intensive HCP tracking has important implications for efficient process development and resin/operating condition selection for both monoclonal antibody (mAb) polishing steps and non-mAb processes. In addition, this study provides a tool to unlock the untapped potential of multimodal resins by aiding in their rational selection and incorporation. Finally, the orthogonality framework here can facilitate the development of sets of next-generation multimodal resins specifically designed to provide highly orthogonal and efficient separations tailored for different expression systems.


Asunto(s)
Técnicas de Cultivo de Célula/métodos , Cromatografía de Fase Inversa/métodos , Ensayos Analíticos de Alto Rendimiento/métodos , Proteínas Recombinantes , Animales , Células CHO , Cromatografía Líquida de Alta Presión/métodos , Cricetinae , Cricetulus , Medios de Cultivo/química , Concentración de Iones de Hidrógeno , Proteínas Recombinantes/análisis , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Saccharomycetales
16.
Blood ; 138(23): 2425-2434, 2021 12 09.
Artículo en Inglés | MEDLINE | ID: mdl-34882208

RESUMEN

von Willebrand factor (VWF) is an ultralong concatemeric protein important in hemostasis and thrombosis. VWF molecules can associate with other VWF molecules, but little is known about the mechanism. Hydrodynamic drag exerts tensile force on surface-tethered VWF that extends it and is maximal at the tether point and declines linearly to 0 at the downstream free end. Using single-molecule fluorescence microscopy, we directly visualized the kinetics of binding of free VWF in flow to surface-tethered single VWF molecules. We showed that self-association requires elongation of tethered VWF and that association increases with tension in tethered VWF, reaches half maximum at a characteristic tension of ∼10 pN, and plateaus above ∼25 pN. Association is reversible and hence noncovalent; a sharp decrease in shear flow results in rapid dissociation of bound VWF. Tethered primary VWF molecules can recruit more than their own mass of secondary VWF molecules from the flow stream. Kinetics show that instead of accelerating, the rate of accumulation decreases with time, revealing an inherently self-limiting self-association mechanism. We propose that this may occur because multiple tether points between secondary and primary VWF result in lower tension on the secondary VWF, which shields more highly tensioned primary VWF from further association. Glycoprotein Ibα (GPIbα) binding and VWF self-association occur in the same region of high tension in tethered VWF concatemers; however, the half-maximal tension required for activation of GPIbα is higher, suggesting differences in molecular mechanisms. These results have important implications for the mechanism of platelet plug formation in hemostasis and thrombosis.


Asunto(s)
Factor de von Willebrand/análisis , Humanos , Hidrodinámica , Cinética , Multimerización de Proteína , Proteínas Recombinantes/análisis , Imagen Individual de Molécula
17.
J Clin Invest ; 131(22)2021 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-34779414

RESUMEN

Cerebral small vessel disease (CSVD) causes dementia and gait disturbance due to arteriopathy. Cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy (CARASIL) is a hereditary form of CSVD caused by loss of high-temperature requirement A1 (HTRA1) serine protease activity. In CARASIL, arteriopathy causes intimal thickening, smooth muscle cell (SMC) degeneration, elastic lamina splitting, and vasodilation. The molecular mechanisms were proposed to involve the accumulation of matrisome proteins as substrates or abnormalities in transforming growth factor ß (TGF-ß) signaling. Here, we show that HTRA1-/- mice exhibited features of CARASIL-associated arteriopathy: intimal thickening, abnormal elastic lamina, and vasodilation. In addition, the mice exhibited reduced distensibility of the cerebral arteries and blood flow in the cerebral cortex. In the thickened intima, matrisome proteins, including the hub protein fibronectin (FN) and latent TGF-ß binding protein 4 (LTBP-4), which are substrates of HTRA1, accumulated. Candesartan treatment alleviated matrisome protein accumulation and normalized the vascular distensibility and cerebral blood flow. Furthermore, candesartan reduced the mRNA expression of Fn1, Ltbp-4, and Adamtsl2, which are involved in forming the extracellular matrix network. Our results indicate that these accumulated matrisome proteins may be potential therapeutic targets for arteriopathy in CARASIL.


Asunto(s)
Alopecia/tratamiento farmacológico , Bencimidazoles/uso terapéutico , Compuestos de Bifenilo/uso terapéutico , Infarto Cerebral/tratamiento farmacológico , Serina Peptidasa A1 que Requiere Temperaturas Altas/fisiología , Leucoencefalopatías/tratamiento farmacológico , Enfermedades de la Columna Vertebral/tratamiento farmacológico , Tetrazoles/uso terapéutico , Proteínas ADAMTS/análisis , Alopecia/complicaciones , Animales , Infarto Cerebral/complicaciones , Circulación Cerebrovascular/efectos de los fármacos , Progresión de la Enfermedad , Proteínas de la Matriz Extracelular/análisis , Proteínas de Unión a TGF-beta Latente/análisis , Leucoencefalopatías/complicaciones , Ratones , Ratones Endogámicos C57BL , Proteínas Recombinantes/análisis , Enfermedades de la Columna Vertebral/complicaciones , Factor de Crecimiento Transformador beta/fisiología
18.
Bioanalysis ; 13(23): 1751-1760, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34758642

RESUMEN

Aim: IL-33 is a potential therapeutic target but commercially available assays for the quantitation of systemic IL-33 have poor reliability. Results: In commercial IL-33 kits, interference from endogenous binding partners (e.g., soluble ST2) causes under-quantitation. Mitigating this required acid dissociation and addition of the detection reagent simultaneously with the capture step. This enabled detection of total, reduced (active) levels of IL-33 in human serum (LLOQ 6.25 pg/ml). Conclusion: Acid treatment of serum samples dissociates IL-33 from endogenous binding partners, increasing soluble ST2 tolerance to >1000 ng/ml. The modified method was specific for reduced endogenous IL-33. Analysis of over 300 samples from individuals with and without asthma and with different smoking status revealed no difference in serum IL-33.


Asunto(s)
Proteína 1 Similar al Receptor de Interleucina-1/química , Interleucina-33/sangre , Asma/sangre , Asma/patología , Humanos , Inmunoensayo , Proteína 1 Similar al Receptor de Interleucina-1/metabolismo , Interleucina-33/química , Interleucina-33/genética , Interleucina-33/metabolismo , Límite de Detección , Oxidación-Reducción , Unión Proteica , Juego de Reactivos para Diagnóstico , Proteínas Recombinantes/análisis , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/aislamiento & purificación , Fumar
19.
Sci Rep ; 11(1): 20013, 2021 10 08.
Artículo en Inglés | MEDLINE | ID: mdl-34625580

RESUMEN

Mal de Río Cuarto virus (MRCV) is a member of the genus Fijivirus of the family Reoviridae that causes a devastating disease in maize and is persistently and propagatively transmitted by planthopper vectors. Virus replication and assembly occur within viroplasms formed by viral and host proteins. This work describes the isolation and characterization of llama-derived Nanobodies (Nbs) recognizing the major viral viroplasm component, P9-1. Specific Nbs were selected against recombinant P9-1, with affinities in the nanomolar range as measured by surface plasmon resonance. Three selected Nbs were fused to alkaline phosphatase and eGFP to develop a sandwich ELISA test which showed a high diagnostic sensitivity (99.12%, 95% CI 95.21-99.98) and specificity (100%, 95% CI 96.31-100) and a detection limit of 0.236 ng/ml. Interestingly, these Nanobodies recognized different P9-1 conformations and were successfully employed to detect P9-1 in pull-down assays of infected maize extracts. Finally, we demonstrated that fusions of the Nbs to eGFP and RFP allowed the immunodetection of virus present in phloem cells of leaf thin sections. The Nbs developed in this work will aid the study of MRCV epidemiology, assist maize breeding programs, and be valuable tools to boost fundamental research on viroplasm structure and maturation.


Asunto(s)
Pruebas Inmunológicas/métodos , Reoviridae , Proteínas Virales , Zea mays/virología , Animales , Camélidos del Nuevo Mundo/inmunología , Ensayo de Inmunoadsorción Enzimática/métodos , Escherichia coli/genética , Enfermedades de las Plantas/virología , Plantas , Proteínas Recombinantes/análisis , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Reoviridae/inmunología , Reoviridae/aislamiento & purificación , Reoviridae/metabolismo , Proteínas Virales/análisis , Proteínas Virales/biosíntesis , Proteínas Virales/genética
20.
Am J Hematol ; 96(12): 1621-1629, 2021 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-34626008

RESUMEN

Athletes abuse recombinant human erythropoietin (rhEPO) and erythropoiesis stimulating agents to increase hemoglobin mass and improve performance. To evade detection, athletes have developed sophisticated blood doping regimens, which often include rhEPO micro-dosing. Detection of these methods requires biomarkers with increased sensitivity and a sample matrix that is more amenable to frequent testing in the field. We have developed a method to measure two immature reticulocyte proteins, CD71 and ferrochelatase (FECH), and one total erythrocyte protein, Band 3, in dried blood spots (DBS). This method was tested in response to rhEPO administration after low doses, 40 IU/kg, micro-doses, 900 IU, or saline injection in 20 healthy subjects. During administration of low-dose rhEPO, the mean CD71/Band 3 and FECH/Band 3 ratio increased by 412 ± 197% and 250 ± 44%, respectively. The mean response for the current biomarker, RET%, increased by 195 ± 35%. During administration of rhEPO micro-doses, CD71/Band 3 increased to 127 ± 25% on day 35 and 139 ± 36% on day 39, while no increase was observed in RET%. After rhEPO administration, during the washout phase, mean values decreased to a minimum of 64 ± 4% and 64 ± 11% for CD71/Band 3 and RET%, respectively. However, CD71/Band 3 remained below 75% of baseline for at least 4 weeks after rhEPO injection, while RET% returned to baseline levels. The results demonstrate that immature reticulocyte proteins have a larger response to rhEPO administration than the current biomarker, RET%, and can be monitored in the DBS matrix.


Asunto(s)
Pruebas con Sangre Seca/métodos , Eritropoyetina/sangre , Reticulocitos/química , Detección de Abuso de Sustancias/métodos , Adolescente , Adulto , Rastreo Celular/métodos , Eritropoyetina/administración & dosificación , Eritropoyetina/análisis , Humanos , Masculino , Persona de Mediana Edad , Efecto Placebo , Proteínas Recombinantes/administración & dosificación , Proteínas Recombinantes/análisis , Proteínas Recombinantes/sangre , Reticulocitos/citología , Adulto Joven
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