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1.
CNS Neurosci Ther ; 30(8): e70000, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-39161158

RESUMEN

AIMS: This study aimed to explore the effects of long noncoding RNA (lncRNA) H19 knockdown on angiogenesis and blood-brain barrier (BBB) integrity following cerebral ischemia/reperfusion (I/R) and elucidate their underlying regulatory mechanisms. METHODS: A middle cerebral artery occlusion/reperfusion model was used to induce cerebral I/R injury. The cerebral infarct volume and neurological impairment were assessed using 2,3,5-triphenyl-tetrazolium chloride staining and neurobehavioral tests, respectively. Relevant proteins were evaluated using western blotting and immunofluorescence staining. Additionally, a bioinformatics website was used to predict the potential target genes of lncRNA H19. Finally, a rescue experiment was conducted to confirm the potential mechanism. RESULTS: Silencing of H19 significantly decreased the cerebral infarct volume, enhanced the recovery of neurological function, mitigated BBB damage, and stimulated endothelial cell proliferation following ischemic stroke. Insulin-like growth factor 2 mRNA-binding protein 2 (IMP2) is predicted to be a potential target gene for lncRNA H19. H19 knockdown increased IMP2 protein expression and IMP2 inhibition reversed the protective effects of H19 inhibition. CONCLUSION: Downregulation of H19 enhances angiogenesis and mitigates BBB damage by regulating IMP2, thereby alleviating cerebral I/R injury.


Asunto(s)
Angiogénesis , Infarto de la Arteria Cerebral Media , Accidente Cerebrovascular Isquémico , ARN Largo no Codificante , Proteínas de Unión al ARN , Animales , Ratones , Barrera Hematoencefálica/metabolismo , Barrera Hematoencefálica/patología , Técnicas de Silenciamiento del Gen/métodos , Infarto de la Arteria Cerebral Media/metabolismo , Infarto de la Arteria Cerebral Media/patología , Accidente Cerebrovascular Isquémico/metabolismo , Accidente Cerebrovascular Isquémico/genética , Accidente Cerebrovascular Isquémico/patología , Ratones Endogámicos C57BL , Neovascularización Fisiológica/fisiología , Daño por Reperfusión/metabolismo , Daño por Reperfusión/genética , Daño por Reperfusión/patología , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo , Proteínas de Unión al ARN/metabolismo , Proteínas de Unión al ARN/genética , Modelos Animales de Enfermedad
2.
Dev Biol ; 516: 59-70, 2024 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-39098630

RESUMEN

Dicer substrate interfering RNAs (DsiRNAs) destroy targeted transcripts using the RNA-Induced Silencing Complex (RISC) through a process called RNA interference (RNAi). This process is ubiquitous among eukaryotes. Here we report the utility of DsiRNA in embryos of the sea urchin Lytechinus variegatus (Lv). Specific knockdowns phenocopy known morpholino and inhibitor knockdowns, and DsiRNA offers a useful alternative to morpholinos. Methods are described for the design of specific DsiRNAs that lead to destruction of targeted mRNA. DsiRNAs directed against pks1, an enzyme necessary for pigment production, show how successful DsiRNA perturbations are monitored by RNA in situ analysis and by qPCR to determine relative destruction of targeted mRNA. DsiRNA-based knockdowns phenocopy morpholino- and drug-based inhibition of nodal and lefty. Other knockdowns demonstrate that the RISC operates early in development as well as on genes that are first transcribed hours after gastrulation is completed. Thus, DsiRNAs effectively mediate destruction of targeted mRNA in the sea urchin embryo. The approach offers significant advantages over other widely used methods in the urchin in terms of cost, and ease of procurement, and offers sizeable experimental advantages in terms of ease of handling, injection, and knockdown validation.


Asunto(s)
Técnicas de Silenciamiento del Gen , Proteína Nodal , Interferencia de ARN , Transducción de Señal , Animales , Proteína Nodal/metabolismo , Proteína Nodal/genética , Transducción de Señal/genética , Técnicas de Silenciamiento del Gen/métodos , Erizos de Mar/genética , Erizos de Mar/embriología , Regulación del Desarrollo de la Expresión Génica , Morfolinos/genética , Morfolinos/farmacología , Embrión no Mamífero/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Lytechinus/genética , Lytechinus/embriología , ARN Interferente Pequeño/metabolismo , ARN Interferente Pequeño/genética , Ribonucleasa III/metabolismo , Ribonucleasa III/genética
3.
Pediatr Surg Int ; 40(1): 221, 2024 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-39133317

RESUMEN

PURPOSE: The aim of this study was to detect candidate oncogenes of rhabdoid tumor of the kidney (RTK) and evaluate their roles in RTK in vitro. METHODS: An integrated analysis of messenger RNA (mRNA) and microRNA (miRNA) sequencing was performed to determine the expression profile of exosome-derived miRNAs and mRNAs in human RTK-derived cell lines and a human embryonic renal cell line. A Gene Ontology enrichment analysis was performed to analyze the functional characteristics of differentially expressed mRNAs in RTK cells. Matrigel invasion and wound-healing assays were performed to evaluate the cell invasion and migration abilities. RESULTS: Forty mRNAs were highly expressed in RTK cells targeted by exosomal miRNAs, the expression of which was lower in RTK cells than in the controls. These mRNAs were primarily related to cell adhesion. Of these mRNAs, we selected neuropilin 1 (NRP1) as a candidate oncogene because its upregulated expression is associated with a poor prognosis of several types of tumors. RTK cells in which NRP1 had been knocked down exhibited decreased invasive and migratory abilities. CONCLUSION: Our study indicates that NRP1 acts as an oncogene by promoting the invasion and migration of RTK cells and that it could serve as a therapeutic target.


Asunto(s)
Movimiento Celular , Neoplasias Renales , Invasividad Neoplásica , Neuropilina-1 , Tumor Rabdoide , Humanos , Neuropilina-1/genética , Neuropilina-1/metabolismo , Movimiento Celular/genética , Neoplasias Renales/genética , Neoplasias Renales/patología , Invasividad Neoplásica/genética , Tumor Rabdoide/genética , Tumor Rabdoide/patología , Línea Celular Tumoral , ARN Mensajero/genética , ARN Mensajero/metabolismo , Regulación Neoplásica de la Expresión Génica , MicroARNs/genética , Técnicas de Silenciamiento del Gen/métodos
4.
Gene Ther ; 31(9-10): 467-476, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39013986

RESUMEN

Gene therapy using siRNA has become a promising strategy to achieve targeted gene knockdown for treatment of cardiovascular pathologies. However, efficient siRNA transfection often relies on cationic delivery vectors such as synthetic cell-penetrating polymers which are susceptible to interference by negatively charged molecules. Anticoagulants such as heparin, which is negatively charged and widely used in cardiovascular applications, may pose a significant barrier to effective siRNA delivery. We therefore conducted in vitro studies utilizing human smooth muscle and endothelial cells transfected with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and ß2-microglobulin (B2M) siRNA in the presence of heparin, argatroban, and bivalirudin in order to determine which anticoagulant therapy is most compatible for siRNA delivery. We observed that while heparin, at clinical doses, decreases the efficiency of siRNA targeted mRNA knockdown, mRNA knockdown is not inhibited in the presence of either argatroban or bivalirudin. Our data suggests that heparin should be avoided during siRNA therapy with cationic transfection agents, and argatroban and bivalirudin should be used in its stead.


Asunto(s)
Arginina , Heparina , ARN Interferente Pequeño , Transfección , Humanos , Heparina/farmacología , ARN Interferente Pequeño/farmacología , ARN Interferente Pequeño/genética , Transfección/métodos , Arginina/análogos & derivados , Arginina/farmacología , Hirudinas/farmacología , Proteínas Recombinantes/metabolismo , Proteínas Recombinantes/genética , Fragmentos de Péptidos/farmacología , Ácidos Pipecólicos/farmacología , Sulfonamidas/farmacología , Microglobulina beta-2/genética , Antitrombinas/farmacología , Técnicas de Silenciamiento del Gen/métodos , Células Endoteliales/metabolismo , Células Endoteliales/efectos de los fármacos , Gliceraldehído-3-Fosfato Deshidrogenasas/genética , Gliceraldehído-3-Fosfato Deshidrogenasas/metabolismo , Gliceraldehído-3-Fosfato Deshidrogenasas/antagonistas & inhibidores , Péptidos de Penetración Celular/farmacología , Terapia Genética/métodos , Anticoagulantes/farmacología , Miocitos del Músculo Liso/metabolismo , Miocitos del Músculo Liso/efectos de los fármacos
5.
Theranostics ; 14(10): 3827-3842, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38994027

RESUMEN

Rationale: In male mammals, many developmental-stage-specific RNA transcripts (both coding and noncoding) are preferentially or exclusively expressed in the testis, where they play important roles in spermatogenesis and male fertility. However, a reliable platform for efficiently depleting various types of RNA transcripts to study their biological functions during spermatogenesis in vivo has not been developed. Methods: We used an adeno-associated virus serotype nine (AAV9)-mediated CRISPR-CasRx system to knock down the expression of exogenous and endogenous RNA transcripts in the testis. Virus particles were injected into the seminiferous tubules via the efferent duct. Using an autophagy inhibitor, 3-methyladenine (3-MA), we optimized the AAV9 transduction efficiency in germ cells in vivo. Results: AAV9-mediated delivery of CRISPR-CasRx effectively and specifically induces RNA transcripts (both coding and noncoding) knockdown in the testis in vivo. In addition, we showed that the co-microinjection of AAV9 and 3-MA into the seminiferous tubules enabled long-term transgene expression in the testis. Finally, we found that a promoter of Sycp1 gene induced CRISPR-CasRx-mediated RNA transcript knockdown in a germ-cell-type-specific manner. Conclusion: Our results demonstrate the efficacy and versatility of the AAV9-mediated CRISPR-CasRx system as a flexible knockdown platform for studying gene function during spermatogenesis in vivo. This approach may advance the development of RNA-targeting therapies for conditions affecting reproductive health.


Asunto(s)
Sistemas CRISPR-Cas , Dependovirus , Técnicas de Silenciamiento del Gen , Espermatogénesis , Testículo , Masculino , Animales , Dependovirus/genética , Sistemas CRISPR-Cas/genética , Ratones , Testículo/metabolismo , Técnicas de Silenciamiento del Gen/métodos , Espermatogénesis/genética , ARN/genética , Vectores Genéticos/genética , Vectores Genéticos/administración & dosificación
6.
CNS Neurosci Ther ; 30(7): e14870, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-39049714

RESUMEN

AIMS: Traumatic brain injury (TBI) stands as a significant concern in public health, frequently leading to enduring neurological deficits. Long non-coding RNA H19 (lncRNA H19) exerts a potential regulator role in the pathology of brain injury. This study investigates the effects of lncRNA H19 knockdown (H19-KD) on the pathophysiology of TBI and its potential neuroprotective mechanisms. METHODS: Controlled cortical impact was employed to establish a stable TBI mouse model. The expression levels of various genes in perilesional cortex and striatum tissue after TBI was detected by RT-qPCR. AAV9-shRNA-H19 was injected into the lateral ventricle of mice to knockdown the expression of lncRNA H19. Various behavioral tests were performed to evaluate sensorimotor and cognitive functions after TBI. Immunofluorescence and Nissl staining were performed to assess brain tissue damage and neuroinflammation. The Nrf2 and HO-1 expression was performed by Western blot. RESULTS: After TBI, the expression of lncRNA H19 was elevated in perilesional tissue and gradually reverted to baseline. Behavioral tests demonstrated that H19-KD significantly promoted the recovery of sensorimotor and cognitive functions after TBI. Besides, H19-KD reduced brain tissue loss, preserved neuronal integrity, and ameliorated white matter damage at the histological level. In addition, H19-KD restrained the pro-inflammatory and facilitated anti-inflammatory phenotypes of microglia/macrophages, attenuating the neuroinflammatory response after TBI. Furthermore, H19-KD promoted activation of the Nrf2/HO-1 axis after TBI, while suppression of Nrf2 partially abolished the neuroprotective effect. CONCLUSION: H19-KD exerts neuroprotective effects after TBI in mice, partially mediated by the activation of the Nrf2/HO-1 axis.


Asunto(s)
Lesiones Traumáticas del Encéfalo , Ratones Endogámicos C57BL , Factor 2 Relacionado con NF-E2 , ARN Largo no Codificante , Recuperación de la Función , Animales , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo , Factor 2 Relacionado con NF-E2/metabolismo , Factor 2 Relacionado con NF-E2/genética , Lesiones Traumáticas del Encéfalo/patología , Lesiones Traumáticas del Encéfalo/metabolismo , Lesiones Traumáticas del Encéfalo/genética , Ratones , Recuperación de la Función/fisiología , Masculino , Técnicas de Silenciamiento del Gen/métodos , Hemo-Oxigenasa 1/metabolismo , Proteínas de la Membrana
7.
ACS Synth Biol ; 13(7): 2091-2104, 2024 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-38916455

RESUMEN

In recent years, the fast-growing bacterium Vibrio natriegens has gained increasing attention as it has the potential to become a next-generation chassis for synthetic biology. A wide range of genetic parts and genome engineering methods have already been developed. However, there is still a need for a well-characterized tool to effectively and gradually reduce the expression levels of native genes. To bridge this gap, we created graded-CRISPRi, a system utilizing gRNA variants that lead to varying levels of repression strength. By incorporating multiple gRNA sequences into our design, we successfully extended this concept to simultaneously repress four distinct reporter genes. Furthermore, we demonstrated the capability of using graded-CRISPRi to target native genes, thereby examining the effect of various knockdown levels on growth.


Asunto(s)
ARN Guía de Sistemas CRISPR-Cas , Vibrio , Vibrio/genética , ARN Guía de Sistemas CRISPR-Cas/genética , Sistemas CRISPR-Cas/genética , Técnicas de Silenciamiento del Gen/métodos , Biología Sintética/métodos , Biblioteca de Genes , Genes Reporteros/genética
8.
Drug Discov Today ; 29(8): 104066, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38908546

RESUMEN

Circular RNAs (circRNAs) are a type of noncoding RNA that are formed by back-splicing from eukaryotic protein-coding genes. The most frequently reported and well-characterized function of circRNAs is their ability to act as molecular decoys, most often as miRNA and protein sponges. However, the functions of most circRNAs still need to be better understood. To more fully understand the biological relevance of validated circRNAs, knockdown functional analyses can be performed using antisense oligonucleotides, RNA interference (RNAi) experiments (e.g., targeting back-splicing junction sites), the clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated (Cas)-9 system (e.g., generating circRNA-specific knockouts), and CRISPR-Cas13 technology to effectively target circRNAs without affecting host genes. In this review, I summarize the feasibility and effectiveness of circRNA knockdown through antisense strategies for investigating the biological roles of circRNAs in cultured cells and animal models.


Asunto(s)
Oligonucleótidos Antisentido , ARN Circular , ARN Circular/genética , Animales , Humanos , Oligonucleótidos Antisentido/genética , Técnicas de Silenciamiento del Gen/métodos , Sistemas CRISPR-Cas/genética , Interferencia de ARN
9.
Brain Res ; 1840: 149060, 2024 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-38851312

RESUMEN

Alzheimer's disease (AD) is a progressive and degenerative disorder accompanied by emotional disturbance, especially anxiety and depression. More and more evidence shows that the imbalance of mitochondrial Ca2+ (mCa2+) homeostasis has a close connection with the pathogenesis of anxiety and depression. The Mitochondrial Calcium Uniporter (MCU), a key channel of mCa2+ uptake, induces the imbalance of mCa2+ homeostasis and may be a therapeutic target for anxiety and depression of AD. In the present study, we revealed for the first time that MCU knockdown in hippocampal neurons alleviated anxious and depressive behaviors of APP/PS1/tau mice through elevated plus-maze (EPM), elevated zero maze (EZM), sucrose preference test (SPT) and tail suspension test (TST). Western blot analysis results demonstrated that MCU knockdown in hippocampal neurons increased levels of glutamate decarboxylase 67 (GAD67), vesicular GABA transporter (vGAT) and GABAA receptor α1 (GABRA1) and activated the PKA-CREB-BDNF signaling pathway. This study indicates that MCU inhibition has the potential to be developed as a novel therapy for anxiety and depression in AD.


Asunto(s)
Enfermedad de Alzheimer , Ansiedad , Canales de Calcio , Depresión , Modelos Animales de Enfermedad , Hipocampo , Ratones Transgénicos , Neuronas , Animales , Enfermedad de Alzheimer/metabolismo , Hipocampo/metabolismo , Neuronas/metabolismo , Depresión/metabolismo , Canales de Calcio/metabolismo , Canales de Calcio/genética , Ansiedad/metabolismo , Ratones , Masculino , Mitocondrias/metabolismo , Glutamato Descarboxilasa/metabolismo , Técnicas de Silenciamiento del Gen/métodos , Conducta Animal/fisiología
10.
Eur J Neurosci ; 60(4): 4393-4408, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38858171

RESUMEN

Animal studies and clinical trials suggest that maintenance of gamma-aminobutyric acid (GABA)-ergic activity may be crucial in coping with stressful conditions, anxiety and mood disorders. Drugs highly efficient in promoting anxiolysis were shown to activate this system, particularly via the α2-subunit of type A receptors (GABAA α2). Given the high expression of GABAA α2 in the dentate gyrus (DG) sub-field of the hippocampus, we sought to examine whether manipulation of the α2 subunit in this area will evoke changes in emotional behaviour, memory and learning as well as in synaptic plasticity. We found that knockdown of GABAAα2 receptor specifically in the dorsal DG of rats caused increased anxiety without affecting locomotor activity. Spatial memory and learning in the Morris water maze were also impaired in GABAAα2 receptor knocked down rats, an effect accompanied by alterations in synaptic plasticity, as assessed by long-term potentiation in the DG. Our findings provide further support to the notion that emotional information processing in the hippocampus may be controlled, at least in part, via the inhibitory GABAA α2 receptor subunit, opening a potential avenue for early interventions from pre- puberty into adulthood, as a strategy for controlling anxiety-related psychopathology.


Asunto(s)
Ansiedad , Giro Dentado , Plasticidad Neuronal , Receptores de GABA-A , Animales , Giro Dentado/metabolismo , Receptores de GABA-A/metabolismo , Receptores de GABA-A/genética , Ansiedad/metabolismo , Plasticidad Neuronal/fisiología , Masculino , Ratas , Trastornos de la Memoria/metabolismo , Trastornos de la Memoria/genética , Aprendizaje por Laberinto/fisiología , Técnicas de Silenciamiento del Gen/métodos , Potenciación a Largo Plazo/fisiología , Ratas Wistar
11.
STAR Protoc ; 5(2): 103075, 2024 Jun 21.
Artículo en Inglés | MEDLINE | ID: mdl-38805394

RESUMEN

3T3-L1 is a model cell line which can be differentiated from preadipocytes into mature adipocytes. Here, we present a protocol for changing gene expression in 3T3-L1 (pre)adipocytes using small interfering RNA (siRNA)-mediated knockdown. We describe steps to perform the knockdown of a certain gene prior to differentiation (day 4) to analyze the impact on adipogenesis. We then detail procedures for knockdown on day 8 of differentiation to study the role of a certain gene in mature adipocyte function. For complete details on the use and execution of this protocol, please refer to Kaczmarek et al.1.


Asunto(s)
Células 3T3-L1 , Adipocitos , Adipogénesis , Diferenciación Celular , Técnicas de Silenciamiento del Gen , ARN Interferente Pequeño , Animales , Ratones , Adipocitos/metabolismo , Adipocitos/citología , ARN Interferente Pequeño/genética , Técnicas de Silenciamiento del Gen/métodos , Adipogénesis/genética , Diferenciación Celular/genética , Expresión Génica/genética
12.
Neurol Res ; 46(8): 706-716, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38735062

RESUMEN

OBJECTIVE: Cerebral ischemia is a neurological disorder that leads to permanent disability. This research focuses on exploring the ameliorative effects of lipid nanoparticle (LNP)-encapsulated lncRNA DLX6-AS1 knockdown in cerebral ischemic injury via the Nrf2/HO-1/NLRP3 axis. METHODS: LNP-encapsulated lncRNA DLX6-AS1 was prepared. Cerebral ischemic injury mouse models were established utilizing middle cerebral artery occlusion (MCAO). The mice were treated by intravenous injection of LNP-encapsulated lncRNA DLX6-AS1. The neurological deficits, Inflammatory factor levels, pathological characteristics were observed. In vitro N2a cell oxygen and glucose deprivation (OGD) models were established, and the cells were treated with LNP-encapsulated lncRNA DLX6-AS1 or Nrf2 inhibitor (ML385). Cell viability and apoptosis were tested. DLX6-AS1, Nrf2, HO-1, and NLRP3 expression levels were assessed. RESULTS: LncRNA DLX6-AS1 levels were elevated in the brain tissues of mice with cerebral ischemic injury and OGD-induced N2a cells. LNP-encapsulated DLX6-AS1 siRNA (si-DLX6-AS1) improved neurological deficit scores, reduced the levels of inflammatory factors, improved brain tissue pathological damage, and raised the number of survival neurons in CA1. LNP-encapsulated si-DLX6-AS1 ameliorated the OGD-induced N2a cell viability decrease and apoptosis rate increase, and ML385 (Nrf2 inhibitor) reversed the ameliorative effects of LNP-encapsulated si-DLX6-AS1. In cerebral ischemic injury mice and OGD-induced N2a cells, Nrf2 and HO-1 levels were reduced and NLRP3 levels were increased. LNP-encapsulated si-DLX6-AS1 raised Nrf2 and HO-1 levels and reduced NLRP3 levels. Nrf2 inhibitor ML385 treatment reversed the ameliorative effects of LNP-encapsulated si-DLX6-AS1 on OGD-induced N2a cell viability and apoptosis. CONCLUSION: Lipid nanoparticle-encapsulated si-DLX6-AS1 ameliorates cerebral ischemic injury via the Nrf2/HO-1/NLRP3 axis.


Asunto(s)
Isquemia Encefálica , Factor 2 Relacionado con NF-E2 , Proteína con Dominio Pirina 3 de la Familia NLR , Nanopartículas , ARN Largo no Codificante , Animales , Factor 2 Relacionado con NF-E2/metabolismo , Factor 2 Relacionado con NF-E2/genética , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo , Nanopartículas/administración & dosificación , Proteína con Dominio Pirina 3 de la Familia NLR/metabolismo , Proteína con Dominio Pirina 3 de la Familia NLR/genética , Ratones , Isquemia Encefálica/metabolismo , Masculino , Ratones Endogámicos C57BL , Técnicas de Silenciamiento del Gen/métodos , Hemo Oxigenasa (Desciclizante)/metabolismo , Hemo Oxigenasa (Desciclizante)/genética , Infarto de la Arteria Cerebral Media , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/genética , Apoptosis/efectos de los fármacos , Lípidos , Liposomas , Hemo-Oxigenasa 1
13.
STAR Protoc ; 5(2): 103082, 2024 Jun 21.
Artículo en Inglés | MEDLINE | ID: mdl-38781076

RESUMEN

Enteroids are in vitro models to study gastrointestinal pathologies and test personalized therapeutics; however, the inherent complexity of enteroids often renders standard gene editing approaches ineffective. Here, we introduce a refined lentiviral transfection protocol, ensuring sufficient lentiviral engagement with enteroids while considering spatiotemporal growth variability throughout the extracellular matrix. Additionally, we highlight a selection process for transduced cells, introduce a protocol to accurately measure transduction efficiency, and explore methodologies to gauge effects of gene knockdown on biological processes.


Asunto(s)
Western Blotting , Citometría de Flujo , Técnicas de Silenciamiento del Gen , Lentivirus , ARN Interferente Pequeño , Humanos , Lentivirus/genética , Citometría de Flujo/métodos , Técnicas de Silenciamiento del Gen/métodos , ARN Interferente Pequeño/genética , Organoides/metabolismo , Vectores Genéticos/genética
14.
Int J Mol Sci ; 25(10)2024 May 10.
Artículo en Inglés | MEDLINE | ID: mdl-38791257

RESUMEN

In this study, we report the complexities and challenges associated with achieving robust RNA interference (RNAi)-mediated gene knockdown in the mosquitoes Aedes aegypti and Aedes albopictus, a pivotal approach for genetic analysis and vector control. Despite RNAi's potential for species-specific gene targeting, our independent efforts to establish oral delivery of RNAi for identifying genes critical for mosquito development and fitness encountered significant challenges, failing to reproduce previously reported potent RNAi effects. We independently evaluated a range of RNAi-inducing molecules (siRNAs, shRNAs, and dsRNAs) and administration methods (oral delivery, immersion, and microinjection) in three different laboratories. We also tested various mosquito strains and utilized microorganisms for RNA delivery. Our results reveal a pronounced inconsistency in RNAi efficacy, characterized by minimal effects on larval survival and gene expression levels in most instances despite strong published effects for the tested targets. One or multiple factors, including RNase activity in the gut, the cellular internalization and processing of RNA molecules, and the systemic dissemination of the RNAi signal, could be involved in this variability, all of which are barely understood in mosquitoes. The challenges identified in this study highlight the necessity for additional research into the underlying mechanisms of mosquito RNAi to develop more robust RNAi-based methodologies. Our findings emphasize the intricacies of RNAi application in mosquitoes, which present a substantial barrier to its utilization in genetic control strategies.


Asunto(s)
Aedes , Interferencia de ARN , Animales , Aedes/genética , ARN Interferente Pequeño/genética , Mosquitos Vectores/genética , Larva/genética , ARN Bicatenario/genética , Silenciador del Gen , Técnicas de Silenciamiento del Gen/métodos
15.
J Biotechnol ; 388: 1-10, 2024 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-38616040

RESUMEN

The tailor-made synthetic sRNA-based gene expression knockdown system has demonstrated its efficacy in achieving pathway balancing in microbes, facilitating precise target gene repression and fine-tuned control of gene expression. This system operates under a competitive mode of gene regulation, wherein the tailor-made synthetic sRNA shares the intrinsic intracellular Hfq protein with other RNAs. The limited intracellular Hfq amount has the potential to become a constraining factor in the post-transcription regulation of sRNAs. To enhance the efficiency of the tailor-made sRNA gene expression regulation platform, we introduced an Hfq expression level modulation-coordinated sRNA-based gene knockdown system. This system comprises tailor-made sRNA expression cassettes that produce varying Hfq expression levels using different strength promoters. Modulating the expression levels of Hfq significantly improved the repressing capacity of sRNA, as evidenced by evaluations with four fluorescence proteins. In order to validate the practical application of this system, we applied the Hfq-modulated sRNA-based gene knockdown cassette to Escherichia coli strains producing 5-aminolevulinic acid and L-tyrosine. Diversifying the expression levels of metabolic enzymes through this cassette resulted in substantial increases of 74.6% in 5-aminolevulinic acid and 144% in L-tyrosine production. Tailor-made synthetic sRNA-based gene expression knockdown system, coupled with Hfq copy modulation, exhibits potential for optimizing metabolic fluxes through biosynthetic pathways, thereby enhancing the production yields of bioproducts.


Asunto(s)
Proteínas de Escherichia coli , Escherichia coli , Regulación Bacteriana de la Expresión Génica , Técnicas de Silenciamiento del Gen , Proteína de Factor 1 del Huésped , Proteína de Factor 1 del Huésped/genética , Proteína de Factor 1 del Huésped/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Técnicas de Silenciamiento del Gen/métodos , Regulación Bacteriana de la Expresión Génica/genética , Tirosina/metabolismo , Tirosina/genética , Ácido Aminolevulínico/metabolismo , ARN Pequeño no Traducido/genética
16.
Methods Mol Biol ; 2849: 55-72, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38411888

RESUMEN

Short hairpin RNA (shRNA) is a technique used to silence gene expression stably in various cells. There are however several reported problems. First, the cloning of oligos can lead to ligation of multiple copies; second, premature termination of sequencing reaction during confirmation of hairpin template; third, microdeletions/substitutions in hairpin during cloning; and fourth, off target effects. In this chapter, we have described a retrovirus transduction-based protocol that can be used on cells in culture without encountering any of the reported issues. We have used this protocol to clone shRNA templates for at least 10 different genes and confirmed them by dideoxy sequencing. The knockdown of 75-90% for two mRNA expressing genes, CDH5 and keratin KRT80, and a long non-coding RNA, XIST, is presented here.


Asunto(s)
Técnicas de Silenciamiento del Gen , ARN Interferente Pequeño , Retroviridae , ARN Interferente Pequeño/genética , Técnicas de Silenciamiento del Gen/métodos , Humanos , Retroviridae/genética , ARN Largo no Codificante/genética , Animales , Transducción Genética , Interferencia de ARN , Vectores Genéticos/genética , Clonación Molecular/métodos , Ratones
17.
Biotechniques ; 76(5): 183-191, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38420933

RESUMEN

In this study, the authors compared the efficiency of automated robotic and manual injection methods for the CRISPR-RfxCas13d (CasRx) system for mRNA knockdown and Cas9-mediated DNA targeting in zebrafish embryos. They targeted the no tail (TBXTA) gene as a proof-of-principle, evaluating the induced embryonic phenotypes. Both Cas9 and CasRx systems caused loss of function phenotypes for TBXTA. Cas9 protein exhibited a higher percentage of severe phenotypes compared with mRNA, while CasRx protein and mRNA showed similar efficiency. Both robotic and manual injections demonstrated comparable phenotype percentages and mortality rates. The findings highlight the potential of RNA-targeting CRISPR effectors for precise gene knockdown and endorse automated microinjection at a speed of 1.0 s per embryo as a high-throughput alternative to manual methods.


Asunto(s)
Sistemas CRISPR-Cas , Microinyecciones , Robótica , Pez Cebra , Animales , Pez Cebra/genética , Pez Cebra/embriología , Sistemas CRISPR-Cas/genética , Microinyecciones/métodos , Robótica/métodos , Interferencia de ARN , Embrión no Mamífero , Técnicas de Silenciamiento del Gen/métodos , Proteínas de Pez Cebra/genética , ARN Mensajero/genética
18.
G3 (Bethesda) ; 14(5)2024 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-38421640

RESUMEN

Macrostomum lignano, a marine free-living flatworm, has emerged as a potent invertebrate model in developmental biology for studying stem cells, germline, and regeneration processes. In recent years, many tools have been developed to manipulate this worm and to facilitate genetic modification. RNA interference is currently the most accessible and direct technique to investigate gene functions. It is obtained by soaking worms in artificial seawater containing dsRNA targeting the gene of interest. Although easy to perform, the original protocol calls for daily exchange of dsRNA solutions, usually until phenotypes are observed, which is both time- and cost-consuming. In this work, we have evaluated alternative dsRNA delivery techniques, such as electroporation and osmotic shock, to facilitate the experiments with improved time and cost efficiency. During our investigation to optimize RNAi, we demonstrated that, in the absence of diatoms, regular single soaking in artificial seawater containing dsRNA directly produced in bacteria or synthesized in vitro is, in most cases, sufficient to induce a potent gene knockdown for several days with a single soaking step. Therefore, this new and highly simplified method allows a very significant reduction of dsRNA consumption and lab work. In addition, it enables performing experiments on a larger number of worms at minimal cost.


Asunto(s)
Platelmintos , Interferencia de ARN , ARN Bicatenario , Animales , Platelmintos/genética , ARN Bicatenario/genética , Técnicas de Silenciamiento del Gen/métodos , Electroporación/métodos
19.
Oxid Med Cell Longev ; 2022: 3723567, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35242276

RESUMEN

Parkinson's disease (PD) is a complex neurological disorder characterized by motor and nonmotor features. Although some drugs have been developed for the therapy of PD in a clinical setting, they only alleviate the clinical symptoms and have yet to show a cure. In this study, by employing the C. elegans model of PD, we found that ferulic acid (FA) significantly inhibited α-synuclein accumulation and improved dyskinesia in NL5901 worms. Meanwhile, FA remarkably decreased the degeneration of dopaminergic (DA) neurons, improved the food-sensing behavior, and reduced the level of reactive oxygen species (ROS) in 6-OHDA-induced BZ555 worms. The mechanistic study discovered that FA could activate autophagy in C. elegans, while the knockdown of 3 key autophagy-related genes significantly revoked the neuroprotective effects of FA in α-synuclein- and 6-OHDA-induced C. elegans models of PD, demonstrating that FA exerts an anti-PD effect via autophagy induction in C. elegans. Furthermore, we found that FA could reduce 6-OHDA- or H2O2-induced cell death and apoptosis in PC-12 cells. Moreover, FA was able to induce autophagy in stable GFP-RFP-LC3 U87 cells and PC-12 cells, while bafilomycin A1 (Baf, an autophagy inhibitor) partly eliminated the protective effects of FA against 6-OHDA- and H2O2-induced cell death and ROS production in PC-12 cells, further confirming that FA exerts an anti-PD effect via autophagy induction in vitro. Collectively, our study provides novel insights for FA as a potent autophagy enhancer to effectively prevent neurodegenerative diseases such as PD in the future.


Asunto(s)
Autofagia/efectos de los fármacos , Caenorhabditis elegans/efectos de los fármacos , Caenorhabditis elegans/metabolismo , Ácidos Cumáricos/farmacología , Fármacos Neuroprotectores/farmacología , Enfermedad de Parkinson/metabolismo , Transducción de Señal/efectos de los fármacos , Animales , Apoptosis/efectos de los fármacos , Autofagia/genética , Caenorhabditis elegans/genética , Proteínas de Caenorhabditis elegans/metabolismo , Neuronas Dopaminérgicas/metabolismo , Técnicas de Silenciamiento del Gen/métodos , Peróxido de Hidrógeno/farmacología , Locomoción/efectos de los fármacos , Locomoción/genética , Oxidopamina/farmacología , Células PC12 , Enfermedad de Parkinson/patología , Interferencia de ARN , Ratas , Especies Reactivas de Oxígeno/metabolismo , Transducción de Señal/genética , alfa-Sinucleína/metabolismo
20.
Oxid Med Cell Longev ; 2022: 8367997, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35242278

RESUMEN

An important pathophysiological consequence of pressure overload-induced cardiac hypertrophy is adverse cardiac remodeling, including structural changes in cardiomyocytes and extracellular matrix. Diosmetin (DIO), a monomethoxyflavone isolated from citrus fruits, had antioxidative stress effects in multiple organs. The purpose of this study was to examine the biological effect of diosmetin on pathological cardiac hypertrophy. In mice, diosmetin treatment reduced cardiac hypertrophy and dysfunction in an aortic banding- (AB-) induced pressure overload model and reducing myocardial oxidative stress by increasing antioxidant gene expression. In vitro, diosmetin (10 or 50 µm, 12 h or 24 h) protected PE-induced cardiomyocyte hypertrophy in neonatal rat cardiomyocytes. Mechanistically, diosmetin inhibited autophagy by activating the PI3K/Akt pathway. In particular, diosmetin induced the accumulation of p62 and its interaction with Keap1, promoted the nuclear translocation of Nrf2, and increased the expression of antioxidant stress genes in the process of cardiac hypertrophy. Furthermore, knockdown of p62 in rat primary cardiomyocytes abrogate the protective effect of diosmetin on cardiomyocyte hypertrophy. Similarly, the Nrf2 inhibitor ML385 obviously abolished the above effects by diosmetin treatment. In conclusion, our results suggest that diosmetin protects cardiac hypertrophy under pressure overload through the p62/Keap1/Nrf2 signaling pathway, suggesting the potential of diosmetin as a novel therapy for pathological cardiac hypertrophy.


Asunto(s)
Antioxidantes/administración & dosificación , Cardiomegalia/tratamiento farmacológico , Cardiomegalia/metabolismo , Flavonoides/administración & dosificación , Proteína 1 Asociada A ECH Tipo Kelch/metabolismo , Miocitos Cardíacos/metabolismo , Factor 2 Relacionado con NF-E2/metabolismo , Proteína Sequestosoma-1/metabolismo , Transducción de Señal/efectos de los fármacos , Animales , Células Cultivadas , Modelos Animales de Enfermedad , Técnicas de Silenciamiento del Gen/métodos , Masculino , Ratones , Ratones Endogámicos C57BL , Estrés Oxidativo/efectos de los fármacos , Estrés Oxidativo/genética , Ratas , Ratas Sprague-Dawley , Proteína Sequestosoma-1/genética , Transducción de Señal/genética , Transfección/métodos , Resultado del Tratamiento
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