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1.
Protein Expr Purif ; 225: 106597, 2025 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-39233018

RESUMEN

A trypsin affinity material was prepared by covalently immobilizing buckwheat trypsin inhibitor (BTI) on epichlorohydrin-activated cross-linked agarose gel (Selfinose CL 6 B). The optimal conditions for activating Selfinose CL 6 B were 15 % epichlorohydrin and 0.8 M NaOH at 40 °C for 2 h. The optimal pH for immobilizing BTI was 9.5. BTI-Sefinose CL 6 B showed a maximum adsorption capacity of 2.25 mg trypsin/(g support). The material also displayed good reusability, retaining over 90 % of its initial adsorption capacity after 30 cycles. High-purity trypsin was obtained from locust homogenate using BTI-Selfinose CL 6 B through one-step affinity chromatography. The molecular mass and Km value of locust trypsin were determined as 27 kDa and 0.241 mM using N-benzoyl-DL-arginine-nitroanilide as substrate. The optimal temperature and pH of trypsin activity were 55 °C and 9.0, respectively. The enzyme exhibited good stability in the temperature range of 30-50 °C and pH range of 4.0-10.0. BTI-Selfinose CL 6 B demonstrates potential application in the preparation of high-purity trypsin and the discovery of more novel trypsin from various species.


Asunto(s)
Cromatografía de Afinidad , Proteínas Recombinantes , Inhibidores de Tripsina , Tripsina , Tripsina/química , Tripsina/metabolismo , Inhibidores de Tripsina/química , Inhibidores de Tripsina/aislamiento & purificación , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Cromatografía de Afinidad/métodos , Proteínas de Plantas/aislamiento & purificación , Proteínas de Plantas/química , Concentración de Iones de Hidrógeno , Fagopyrum/química , Temperatura , Sefarosa/química , Estabilidad de Enzimas
2.
Biomed Res Int ; 2024: 7919329, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39371248

RESUMEN

Backgrounds: Various physiological functions and reaction cascades, as well as disease progression in the living systems, are controlled by the activity of specific proteolytic enzymes. We conducted the study to evaluate protease activity by assessing peptide fragments from either conserved or labeled red blood cells (RBCs) with aminofluorescein (AF) in the reaction media. Methods: RBCs were incubated in media containing trypsin. Subsequently, the concentration of peptide fragments in the reaction media, resulted by the digestion with trypsin from conserved cells, was estimated by 3-(4-carboxybenzoyl)quinoline-2-carboxaldehyde (CBQCA) as an amine-reactive fluorogenic reagent. In a second approach, we conjugated AF to the conserved RBCs and then exposed AF-labeled RBCs to trypsin. This was followed by directly measuring the fluorescence intensity (FI) in the reaction media to estimate the concentration of AF-labeled peptide fragments resulting from the enzyme's activity. Results: Show a concentration- and time-dependent increase in FIs, reflecting the activity of trypsin as a proteolytic enzyme. The FIs increased significantly by 4 to 5 folds in samples treated with different enzyme concentrations, and by over 11 folds after 2 h incubation in media containing a 50 µL trypsin, as evidenced by CBQCA assays. Conclusion: These fast and affordable approaches could be applied with high reliability for the general estimation of protease activity in samples and customized for diagnostic purposes and prognostic evaluation in various diseases.


Asunto(s)
Eritrocitos , Fluoresceínas , Proteolisis , Tripsina , Humanos , Eritrocitos/metabolismo , Tripsina/metabolismo , Tripsina/química , Fluoresceínas/química , Fragmentos de Péptidos/metabolismo , Fragmentos de Péptidos/química , Colorantes Fluorescentes/química
3.
PLoS One ; 19(10): e0312149, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39418235

RESUMEN

The mechanism that triggers the progressive dysregulation of cell functions, inflammation, and breakdown of tissues during aging is currently unknown. We propose here a previously unknown mechanism due to tissue autodigestion by the digestive enzymes. After synthesis in the pancreas, these powerful enzymes are activated and transported inside the lumen of the small intestine to which they are compartmentalized by the mucin/epithelial barrier. We hypothesize that this barrier leaks active digestive enzymes (e.g. during meals) and leads to their accumulation in tissues outside the gastrointestinal tract. Using immune-histochemistry we provide evidence in young (4 months) and old (24 months) rats for significant accumulation of pancreatic trypsin, elastase, lipase, and amylase in peripheral organs, including liver, lung, heart, kidney, brain, and skin. The mucin layer density on the small intestine barrier is attenuated in the old and trypsin leaks across the tip region of intestinal villi with depleted mucin. The accumulation of digestive enzymes is accompanied in the same tissues of the old by damage to collagen, as detected with collagen fragment hybridizing peptides. We provide evidence that the hyperglycemia in the old is accompanied by proteolytic cleavage of the extracellular domain of the insulin receptor. Blockade of pancreatic trypsin in the old by a two-week oral treatment with a serine protease inhibitor (tranexamic acid) serves to significantly reduce trypsin accumulation in organs outside the intestine, collagen damage, as well as hyperglycemia and insulin receptor cleavage. These results support the hypothesis that the breakdown of tissues in aging is due to autodigestion and a side-effect of the fundamental requirement for digestion.


Asunto(s)
Envejecimiento , Tripsina , Animales , Envejecimiento/metabolismo , Ratas , Tripsina/metabolismo , Masculino , Intestino Delgado/metabolismo , Mucinas/metabolismo , Elastasa Pancreática/metabolismo , Amilasas/metabolismo , Lipasa/metabolismo , Colágeno/metabolismo
4.
J Am Chem Soc ; 146(36): 24754-24758, 2024 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-39225120

RESUMEN

Hyperpolarization derived from water protons enhances the NMR signal of 15N nuclei in a small molecule, enabling the sensitive detection of a protein-ligand interaction. The water hyperpolarized by dissolution dynamic nuclear polarization (D-DNP) acts as a universal signal enhancement agent. The 15N signal of benzamidine was increased by 1480-fold through continuous polarization transfer by J-coupling-mediated cross-polarization (J-CP) via the exchangeable protons. The signal enhancement factor favorably compares to factors of 110- or 17-fold using non-CP-based polarization transfer mechanisms. The hyperpolarization enabled detection of the binding of benzamidine to the target protein trypsin with a single-scan measurement of 15N R2 relaxation. J-CP provides an efficient polarization mechanism for 15N or other low-frequency nuclei near an exchangeable proton. The hyperpolarization transfer sustained within the relaxation time limit of water protons additionally can be applied for the study of macromolecular structure and biological processes.


Asunto(s)
Protones , Agua , Agua/química , Ligandos , Unión Proteica , Benzamidinas/química , Resonancia Magnética Nuclear Biomolecular , Tripsina/química , Tripsina/metabolismo , Isótopos de Nitrógeno/química
5.
Langmuir ; 40(37): 19357-19369, 2024 Sep 17.
Artículo en Inglés | MEDLINE | ID: mdl-39241011

RESUMEN

The accurate detection of Protamine and Trypsin, two biomolecules with significant clinical and biological relevance, presents a substantial challenge because of their structural peculiarities, low abundance in physiological fluids, and potential interference from other substances. Protamine, a cationic protein, is crucial for counteracting heparin overdoses, whereas Trypsin, a serine protease, is integral to protein digestion and enzyme activation. This study introduces a novel fluorescence sensor based on a (4-(1,2,2-tris(4-phosphonophenyl)vinyl)phenyl)phosphonic acid octasodium salt (TPPE), leveraging aggregation-induced emission (AIE) characteristics and electrostatic interactions to achieve selective and sensitive detection of these biomolecules. Through comprehensive optical characterization, including ground-state absorption, steady-state, and time-resolved emission spectroscopy, the interaction mechanisms and aggregation dynamics of TPPE with Protamine and Trypsin were elucidated. The sensor exhibits very high sensitivity (LOD: 1.45 nM for Protamine and 32 pM for Trypsin), selectivity, and stability, successfully operating in complex biological matrices, such as human serum and urine. Importantly, this sensor design underscores the synergy between the AIE phenomena and biomolecular interactions, offering a promising alternative for analytical applications in biomedical research and clinical diagnostics. The principles outlined herein open new avenues for the development of other AIE-based sensors, expanding the toolkit available for detecting a wide range of biomolecules using similar design strategies.


Asunto(s)
Colorantes Fluorescentes , Protaminas , Espectrometría de Fluorescencia , Electricidad Estática , Estilbenos , Tripsina , Protaminas/química , Estilbenos/química , Tripsina/química , Tripsina/metabolismo , Espectrometría de Fluorescencia/métodos , Colorantes Fluorescentes/química , Humanos
6.
J Am Soc Mass Spectrom ; 35(10): 2267-2271, 2024 Oct 02.
Artículo en Inglés | MEDLINE | ID: mdl-39304183

RESUMEN

Apolipoprotein A-I (ApoA-I), one of the most abundant proteins in plasma and the major protein component of high-density lipoprotein (HDL), is naturally found in several proteoforms; two of them are ProApoA-I and mature ApoA-I. These two proteoforms of ApoA-I coexist in biological samples and differ only in their N-terminal end. Virtually, the only way to differentiate them is by detecting the proteoform-specific N-terminal proteolytic peptides (RHFWQQDEPPQSPWDR and DEPPQSPWDR, respectively) using liquid chromatography in multiple reaction monitoring mode mass spectrometry (LC-MRM-MS). We have developed a bottom-up LC-MRM-MS method to simultaneously detect proApoA-I and mature ApoA-I. To test the specificity of the method, we digested with trypsin purified mature ApoA-I and recombinant proApoA-I. As expected, only the N-term peptide corresponding to the mature ApoA-I proteoform (DEPPQSPWDR) was detected when digesting mature ApoA-I. However, the digestion of the proApoA-I produced not only the N-terminal peptide corresponding to proApoA-I (RHFWQQDEPPQSPWDR) but also the N-terminal tryptic peptide corresponding to mature ApoA-I (DEPPQSPWDR). This effect was produced by standard and high-specificity trypsin as well as by the Arg-C enzyme in a self-limited manner (approximately 10% of the total). The synthetic proApo-I peptide is not cleaved by trypsin, suggesting that the here reported effect is dependent on protein conformation. The effect is not negligible, as it can be detected by LC-MRM-MS, and correction calculations should be applied to accurately quantify proApoA-I and mature ApoA-I in biological samples where these two proteoforms may coexist.


Asunto(s)
Apolipoproteína A-I , Espectrometría de Masas , Tripsina , Apolipoproteína A-I/análisis , Apolipoproteína A-I/química , Apolipoproteína A-I/metabolismo , Tripsina/metabolismo , Tripsina/química , Humanos , Cromatografía Liquida/métodos , Espectrometría de Masas/métodos , Secuencia de Aminoácidos , Fragmentos de Péptidos/análisis , Fragmentos de Péptidos/química , Fragmentos de Péptidos/metabolismo , Datos de Secuencia Molecular
7.
Int J Biol Macromol ; 279(Pt 3): 135372, 2024 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-39244112

RESUMEN

In this experiment, the co-constructed O/W emulsions of different soy protein hydrolysates (SPHs) and gum arabic (GA) were investigated. SPHs were prepared by hydrolyzing soy protein isolate (SPI) using different enzymes, and investigated the effects of enzyme types and hydrolysis time on the physicochemical properties of SPHs. Moreover, SPI/GA and SPHs/GA were prepared and used as hydrophilic emulsifiers to construct O/W emulsions. The results showed that the optimal hydrolysis times for bromelain, pepsin and trypsin were 2 h (BSPH2), 3 h (PSPH3) and 3 h (TSPH3), respectively. Compared with SPI/GA emulsions, SPHs/GA emulsions had smaller particle size, more negative charge, higher interfacial adsorbed protein, and more stable emulsion systems. During the digestion process, SPHs/GA emulsions were effective in realizing the release of bioactives. In conclusion, enzymatic hydrolysis can be an effective modification technique, and SPHs/GA can be used as an effective emulsifier for the emulsion system.


Asunto(s)
Emulsiones , Hidrolisados de Proteína , Proteínas de Soja , Proteínas de Soja/química , Emulsiones/química , Hidrolisados de Proteína/química , Hidrólisis , Tamaño de la Partícula , Digestión , Goma Arábiga/química , Emulsionantes/química , Pepsina A/química , Pepsina A/metabolismo , Tripsina/química , Tripsina/metabolismo
8.
Rapid Commun Mass Spectrom ; 38(22): e9892, 2024 Nov 30.
Artículo en Inglés | MEDLINE | ID: mdl-39287025

RESUMEN

RATIONALE: Heavy-labelled internal standards increasingly represent the gold standard for absolute quantitation in mass spectrometry (MS)-based bottom-up proteomics. The biggest drawbacks of using these standards are that they have high costs and lengthy lead times. METHODS: We describe an efficient, low-cost optimised method to enable 'in-house' heavy labelling of synthetic tryptic peptides for absolute quantification using tandem LC-MS/MS mass spectrometry. Our methodology uses 18O water in a trypsin-catalysed oxygen exchange reaction at the carboxyl terminus with the overall aim of reducing the costs and lead time associated with sourcing heavy standards from commercial vendors. RESULTS: Step-by-step instructions are provided on how to execute this protocol with high-throughput adaptations utilising a 96-well plate and a liquid-handling robot. Detailed notes on experimental setup, tips for troubleshooting and suggested improvements to maximise labelling efficiencies are highlighted to achieve the best results. Under optimum conditions, labelling efficiencies of peptides can reach from 95% to 100%. CONCLUSIONS: The application of the 'in-house' labelled standards in generating calibration curves to quantify endogenous peptide concentrations is just as effective as using the synthetically sourced standards while also having great cost reduction implications as well as saving time spent waiting for peptides to arrive. The protocol is highly adaptable and can be customized to fit the specific setup of any laboratory, maximizing achievable labelling efficiencies.


Asunto(s)
Marcaje Isotópico , Péptidos , Proteómica , Espectrometría de Masas en Tándem , Proteómica/métodos , Espectrometría de Masas en Tándem/métodos , Péptidos/química , Péptidos/análisis , Marcaje Isotópico/métodos , Isótopos de Oxígeno/análisis , Isótopos de Oxígeno/química , Tripsina/química , Tripsina/metabolismo , Cromatografía Liquida/métodos
9.
Biomacromolecules ; 25(9): 6082-6092, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-39116325

RESUMEN

The presence of Ca2+ ions is known to facilitate the activity of trypsin-like serine proteases via structural stabilization against thermal denaturation and autolysis. Herein, we report a new and hidden regulatory role of Ca2+ in the catalytic pathways of trypsin and α-chymotrypsin under physiological conditions. We discovered that macromolecular crowding promotes spontaneous homotypic condensation of trypsin via liquid-liquid phase separation to yield membraneless condensates over a broad range of concentrations, pH, and temperature, which are stabilized by multivalent hydrophobic interactions. Interestingly, we found that Ca2+ binding in the calcium binding loop reversibly regulates the condensation of trypsin and α-chymotrypsin. Spontaneous condensation effectively prevents autolysis of trypsin and preserves its native-like esterase activity for a prolonged period of time. It has also been found that phase-separated trypsin responds to Ca2+-dependent activation of its esterase activity even after 14 days of storage while free trypsin failed to do so. The present study highlights an important physiological aspect by which cells can spatiotemporally regulate the biocatalytic efficacy of trypsin-like serine proteases via Ca2+-signaling.


Asunto(s)
Calcio , Quimotripsina , Esterasas , Tripsina , Tripsina/metabolismo , Tripsina/química , Calcio/metabolismo , Quimotripsina/metabolismo , Quimotripsina/química , Esterasas/metabolismo , Animales , Activación Enzimática/efectos de los fármacos , Autólisis , Concentración de Iones de Hidrógeno
10.
Biomacromolecules ; 25(9): 5873-5888, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-39177359

RESUMEN

Metal-organic frameworks and hydrogen-organic frameworks (MOFs and HOFs) are attractive hosts for enzyme immobilization, but they are limited to immobilizing the purified enzymes, making industrial upscaling unattractive. Herein, aptamer-modified dual thermoresponsive polymeric micelles with switchable self-assembly and core-shell structure are constructed, which enable selective immobilization of trypsin directly from complex biological systems through a cascade operation of separation and immobilization. Their steric self-assembly provides a large amount of adsorption sites on the soluble micellar shell, resulting in high adsorption capacity and excellent selectivity. Meanwhile, their aptamer affinity ligand and cavity maintain the native conformations of trypsin and offer protective effects even in harsh conditions. The maximum adsorption capacity of the polymeric micelles for trypsin was determined to be 197 mg/g at 60 min, superior to those of MOFs and HOFs. 67.2 and 86.6% of its original activity was retained for trypsin immobilized in the cavity under strong alkaline and acidic conditions, respectively.


Asunto(s)
Enzimas Inmovilizadas , Micelas , Polímeros , Tripsina , Tripsina/química , Tripsina/metabolismo , Enzimas Inmovilizadas/química , Polímeros/química , Estructuras Metalorgánicas/química , Adsorción , Aptámeros de Nucleótidos/química
11.
Dokl Biochem Biophys ; 518(1): 452-462, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39196532

RESUMEN

AIM: Molecular alterations of diabetic gastroenteropathy are poorly identified. This study investigates the effects of prolonged GABA supplementation on key protein expression levels of trypsin-1, PAR-1, PAR-2, PAR-3, PI3K, Akt, COX-2, GABAA, and GABAB receptors in the gastric tissue of type 2 diabetic rats (T2DM). METHOD: To induce T2DM, a 3-month high-fat diet and 35 mg/kg of streptozotocin was used. Twenty-four male Wistar rats were divided into 4 groups: (1) control, (2) T2DM, (3) insulin-treated (2.5 U/kg), and (4) GABA-treated (1.5 g/kg GABA). Blood glucose was measured weekly. The protein expressions were assessed using western blotting. Histopathological changes were examined by H&E and Masson's staining. RESULTS: Diabetic rats show reduced NOS1 and elevated COX-2 and trypsin-1 protein expression levels in gastric tissue. Insulin and GABA therapy restored the NOS1 and COX-2 levels to control values. Insulin treatment increased PI3K, Akt, and p-Akt and, decreased trypsin-1, PAR-1, PAR-2, and PAR-3 levels in the diabetic rats. Levels of GABAA and GABAB receptors normalized following insulin and GABA therapy. H&E staining indicated an increase in mucin secretion following GABA treatment. CONCLUSION: These results suggest that GABA by acting on GABA receptors may regulate the trypsin-1/PARs/Akt/COX-2 pathway and thereby improve complications of diabetic gastroenteropathy.


Asunto(s)
Ciclooxigenasa 2 , Diabetes Mellitus Experimental , Proteínas Proto-Oncogénicas c-akt , Ratas Wistar , Receptores de GABA , Ácido gamma-Aminobutírico , Animales , Masculino , Ciclooxigenasa 2/metabolismo , Proteínas Proto-Oncogénicas c-akt/metabolismo , Ratas , Diabetes Mellitus Experimental/metabolismo , Diabetes Mellitus Experimental/tratamiento farmacológico , Receptores de GABA/metabolismo , Ácido gamma-Aminobutírico/metabolismo , Tripsina/metabolismo , Diabetes Mellitus Tipo 2/metabolismo , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Diabetes Mellitus Tipo 2/complicaciones , Transducción de Señal/efectos de los fármacos , Suplementos Dietéticos
12.
Anal Chem ; 96(36): 14393-14404, 2024 Sep 10.
Artículo en Inglés | MEDLINE | ID: mdl-39186690

RESUMEN

BACKGROUND: Bile's potential to reflect the health of the biliary system has led to increased attention, with proteomic analysis offering deeper understanding of biliary diseases and potential biomarkers. With the emergence of normothermic machine perfusion (NMP), bile can be easily collected and analyzed. However, the composition of bile can make the application of proteomics challenging. This study systematically evaluated various trypsin digestion methods to optimize proteomics of bile from human NMP livers. METHODS: Bile was collected from 12 human donor livers that were accepted for transplantation after the NMP viability assessment. We performed tryptic digestion using six different methods: in-gel, in-solution, S-Trap, SMART, EasyPep, and filter-aided sample purification, with or without additional precipitation before digestion. Proteins were analyzed using untargeted proteomics. Methods were assessed for total protein IDs, variation, and protein characteristics to determine the most optimal method. RESULTS: Methods involving precipitation surpassed crude methods in protein identifications (4500 vs 3815) except for in-gel digestion. Filtered data (40%) resulted in 3192 versus 2469 for precipitated and crude methods, respectively. We found minimal differences in mass, cellular components, or hydrophobicity of proteins between methods. Intermethod variability was notably diverse, with in-gel, in-solution, and EasyPep outperforming others. Age-related biological comparisons revealed upregulation of metabolic-related processes in younger donors and immune response and cell cycle-related processes in older donors. CONCLUSIONS: Variability between methods emphasizes the importance of cross-validation across multiple analytical approaches to ensure robust analysis. We recommend the in-gel crude method for its simplicity and efficiency, avoiding additional precipitation steps. Sample processing speed, cost, cleanliness, and reproducibility should be considered when a digestion method is selected for bile proteomics.


Asunto(s)
Bilis , Biomarcadores , Proteómica , Humanos , Proteómica/métodos , Bilis/química , Bilis/metabolismo , Biomarcadores/análisis , Biomarcadores/metabolismo , Tripsina/metabolismo , Tripsina/química , Persona de Mediana Edad , Masculino
13.
Int J Biol Macromol ; 278(Pt 2): 134677, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39142478

RESUMEN

Complex and stubborn bacterial biofilm infections significantly hinder diabetic wound healing and threaten public health. Therefore, a dressing material that effectively clears biofilms and promotes wound healing is urgently required. Herein, we introduce a novel strategy for simultaneously dispersing extracellular polymeric substances and eradicating drug-resistant bacteria. We prepared an ultrabroad-spectrum and injectable quaternized chitosan (QCS) hydrogel loaded with trypsin, which degrades biofilm extracellular proteins. Increased temperature initiated QCS gelation to form the hydrogel, enabling the sustained release of trypsin and effective adherence of the hydrogel to irregularly shaped wounds. To reproduce clinical scenarios, biofilms formed by a mixture of Staphylococcus aureus (S. aureus), Methicillin-resistant S. aureus, and Pseudomonas aeruginosa were administered to the wounds of rats with streptozotocin-induced diabetes. Under these severe infection conditions, the hydrogel efficiently suppressed inflammation, promoted angiogenesis, and enhanced collagen deposition, resulting in accelerated healing of diabetic wounds. Notably, the hydrogel demonstrates excellent biocompatibility without cytotoxicity. In summary, we present a trypsin-loaded QCS hydrogel with tremendous clinical applications potential for the treatment of chronic infected wounds.


Asunto(s)
Biopelículas , Quitosano , Diabetes Mellitus Experimental , Hidrogeles , Tripsina , Cicatrización de Heridas , Biopelículas/efectos de los fármacos , Quitosano/química , Quitosano/farmacología , Hidrogeles/química , Hidrogeles/farmacología , Cicatrización de Heridas/efectos de los fármacos , Animales , Ratas , Tripsina/química , Tripsina/metabolismo , Diabetes Mellitus Experimental/complicaciones , Antibacterianos/farmacología , Antibacterianos/química , Pseudomonas aeruginosa/efectos de los fármacos , Staphylococcus aureus/efectos de los fármacos , Masculino , Infección de Heridas/tratamiento farmacológico , Infección de Heridas/microbiología , Matriz Extracelular de Sustancias Poliméricas/química , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos
14.
Talanta ; 280: 126745, 2024 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-39180874

RESUMEN

The effective method for trypsin purification should be established because trypsin has important economic value. In this work, a novel and simple strategy was proposed for fabricating micron-sized magnetic Fe3O4@agarose-benzamidine beads (MABB) with benzamidine as a ligand, which can efficiently and selectively capture trypsin. The micro-sized MABB, with clear spherical core-shell structure and average particle size of 6.6 µm, showed excellent suspension ability and magnetic responsiveness in aqueous solution. The adsorption capacity and selectivity of MABB towards target trypsin were significantly better than those of non-target lysozyme. According to the Langmuir equation, the maximum adsorption capacity of MABB for trypsin was 1946 mg g-1 at 25 °C, and the adsorption should be a physical sorption process. Furthermore, the initial adsorption rate and half equilibrium time of MABB toward trypsin were 787.4 mg g-1 min-1 and 0.71 min, respectively. To prove the practicability, MABB-based magnetic solid-phase extraction (MSPE) was proposed, and the related parameters were optimized in detail to improve the purification efficiency. With Tris-HCl buffer (50 mM, 10 mM CaCl2, pH 8.0) as extraction buffer, Tris-HCl buffer (50 mM, 100 mM CaCl2, pH 8.0) as rinsing buffer, acidic eluent (0.01 M HCl, 0.5 M NaCl, pH 2.0) as eluent buffer and alkaline buffer (1 M Tris-HCl buffer, pH 10.0) as neutralization solution, the MABB-based MSPE was successfully used for trypsin purification from the viscera of grass carp (Ctenopharyngodon idella). The molecular weight of purified trypsin was determined as approximate 23 kDa through sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The purified trypsin was highly active from 30 °C to 60 °C, with an optimum temperature of 50 °C, and was tolerant to pH variation, exhibiting 85 % of maximum enzyme activity from pH 7.0 to 10.0. The results demonstrated that the proposed MABB-based MSPE could effectively purify trypsin and ensure the biological activity of purified trypsin. Therefore, we believe that the novel MABB could be applicable for efficient purification of trypsin from complex biological systems.


Asunto(s)
Benzamidinas , Sefarosa , Tripsina , Animales , Tripsina/química , Tripsina/metabolismo , Sefarosa/química , Benzamidinas/química , Benzamidinas/aislamiento & purificación , Adsorción , Peces , Tamaño de la Partícula , Extracción en Fase Sólida/métodos , Concentración de Iones de Hidrógeno
15.
Int J Biol Macromol ; 278(Pt 3): 135017, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39182867

RESUMEN

Proteases play a crucial role in industrial enzyme formulations, with activity fluctuations significantly impacting product quality and yield. Therefore, developing a method for precise and rapid detection of protease activity is paramount. This study aimed to develop a rapid and accurate method for quantifying trypsin activity using integrated infrared (IR) and ultraviolet (UV) spectroscopy combined with data fusion techniques. The developed method evaluates the enzymatic activity of trypsin under varying conditions, including temperature, pH, and ionic strength. By comparing different data fusion methods, the study identifies the optimal model for accurate enzyme activity prediction. The results demonstrated significant improvements in predictive performance using the feature-level data fusion approach. Additionally, substituting the spectral data of the samples in the validation sets into the best prediction model resulted in a minimal residual difference between predicted and true values, further verifying the model's accuracy and reliability. This innovative approach offers a practical solution for the efficient and precise quantification of enzyme activity, with broad applications in industrial processes.


Asunto(s)
Espectrofotometría Ultravioleta , Tripsina , Tripsina/química , Tripsina/metabolismo , Espectrofotometría Ultravioleta/métodos , Concentración de Iones de Hidrógeno , Temperatura , Espectrofotometría Infrarroja/métodos , Concentración Osmolar
16.
J Proteome Res ; 23(10): 4761-4769, 2024 Oct 04.
Artículo en Inglés | MEDLINE | ID: mdl-39213590

RESUMEN

A key parameter of any bottom-up proteomics mass spectrometry experiment is the identity of the enzyme that is used to digest proteins in the sample into peptides. The Casanovo de novo sequencing model was trained using data that was generated with trypsin digestion; consequently, the model prefers to predict peptides that end with the amino acids "K" or "R". This bias is desirable when Casanovo is used to analyze data that was also generated using trypsin but can be problematic if the data was generated using some other digestion enzyme. In this work, we modify Casanovo to take as input the identity of the digestion enzyme alongside each observed spectrum. We then train Casanovo with data generated by using several different enzymes, and we demonstrate that the resulting model successfully learns to capture enzyme-specific behavior. However, we find, surprisingly, that this new model does not yield a significant improvement in sequencing accuracy relative to a model trained without enzyme information but using the same training set. This observation may have important implications for future attempts to make use of experimental metadata in de novo sequencing models.


Asunto(s)
Proteómica , Tripsina , Proteómica/métodos , Tripsina/metabolismo , Tripsina/química , Espectrometría de Masas/métodos , Péptidos/metabolismo , Péptidos/química , Proteolisis
18.
Biochem Biophys Res Commun ; 733: 150603, 2024 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-39216203

RESUMEN

Serine proteases are among the important groups of enzymes having significant roles in cell biology. Trypsin is a representative member of the serine superfamily of enzymes, produced by acinar cells of pancreas. It is a validated drug target for various ailments including pancreatitis and colorectal cancer. Premature activation of trypsin is involved in the lysis of pancreatic tissues, which causes pancreatitis. It is also reported to be involved in colorectal carcinoma by activating other proteases, such as matrix metalloproteinase (MMPs). The development of novel trypsin inhibitors with good pharmacokinetic properties could play important roles in pharmaceutical sciences. This study reports the crystal structures of bovine pancreatic trypsin with four molecules; cimetidine, famotidine, pimagedine, and guanidine. These compounds possess binding affinity towards the active site (S1) of trypsin. The structures of all four complexes provided insight of the binding of four different ligands, as well as the dynamics of the active site towards the bind with different size ligands. This study might be helpful in designing of new potent inhibitors of trypsin and trypsin like serine proteases.


Asunto(s)
Cimetidina , Famotidina , Tripsina , Tripsina/metabolismo , Tripsina/química , Famotidina/química , Famotidina/metabolismo , Animales , Cimetidina/metabolismo , Cimetidina/química , Cimetidina/farmacología , Bovinos , Unión Proteica , Guanidina/química , Guanidina/metabolismo , Cristalografía por Rayos X , Modelos Moleculares , Dominio Catalítico , Serina Proteasas/metabolismo , Serina Proteasas/química , Inhibidores de Tripsina/metabolismo , Inhibidores de Tripsina/química , Sitios de Unión , Conformación Proteica , Guanidinas/metabolismo , Guanidinas/química
19.
Int J Biol Macromol ; 278(Pt 1): 134649, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39128763

RESUMEN

Immunoglobulin G (IgG) exhibits potent antiviral, antibacterial, and immunological activities. The digestion process and bioavailability of IgG are often a concern. Dietary hydrocolloids are crucial for regulating healthy digestion and the bioavailability of protein as functional components. Understanding the effects of dietary hydrocolloids on the digestive kinetics of IgG is requisite. Herein, the pepsin and trypsin digestion of IgG was investigated using ordered porous layer interferometry (OPLI). The real-time variation in the interference spectral shift reflected by OPLI can be converted into changes in the optical thickness (OT) to obtain a degradation kinetics curve. The impact of dietary hydrocolloids, including alginic acid sodium salt (ALG), polydextrose (PD), and konjac glucomannan (KG), on IgG degradation was evaluated using OPLI. The results demonstrated that ALG significantly inhibited the degradation of IgG by pepsin under acidic conditions, whereas the addition of PD increased the Michaelis-Menten constant for IgG degradation by trypsin. Notably, this dependence is not based on the hydrocolloid viscosity, but relies more on the electrical properties. The study enhances our understanding of how hydrocolloids affect IgG digestion and could provide valuable insights into preserving IgG activity and facilitating the development of oral drugs or health products related to IgG.


Asunto(s)
Coloides , Inmunoglobulina G , Pepsina A , Proteolisis , Tripsina , Inmunoglobulina G/química , Tripsina/química , Tripsina/metabolismo , Coloides/química , Pepsina A/metabolismo , Pepsina A/química , Cinética , Humanos , Animales
20.
Nat Commun ; 15(1): 7235, 2024 Aug 22.
Artículo en Inglés | MEDLINE | ID: mdl-39174548

RESUMEN

A variety of therapeutic possibilities have emerged for skillfully regulating protein function or conformation through intermolecular interaction modulation to rectify abnormal biochemical reactions in diseases. Herein, a devised strategy of enzyme coordinators has been employed to alleviate postoperative pancreatic fistula (POPF), which is characterized by the leakage of digestive enzymes including trypsin, chymotrypsin, and lipase. The development of a dextrorotary (D)-peptide supramolecular gel (CP-CNDS) under this notion showcases its propensity for forming gels driven by intermolecular interaction. Upon POPF, CP-CNDS not only captures enzymes from solution into hydrogel, but also effectively entraps them within the internal gel, preventing their exchange with counterparts in the external milieu. As a result, CP-CNDS completely suppresses the activity of digestive enzymes, effectively alleviating POPF. Remarkably, rats with POPF treated with CP-CNDS not only survived but also made a recovery within a mere 3-day period, while mock-treated POPF rats had a survival rate of less than 5 days when experiencing postoperative pancreatic fistula, leak or abscess. Collectively, the reported CP-CNDS provides promising avenues for preventing and treating POPF, while exemplifying precision medicine-guided regulation of protein activity that effectively targets specific pathogenic molecules across multiple diseases.


Asunto(s)
Hidrogeles , Fístula Pancreática , Péptidos , Fístula Pancreática/prevención & control , Animales , Ratas , Hidrogeles/química , Masculino , Péptidos/farmacología , Péptidos/química , Péptidos/metabolismo , Quimotripsina/metabolismo , Complicaciones Posoperatorias/prevención & control , Tripsina/metabolismo , Tripsina/química , Lipasa/metabolismo , Humanos , Ratas Sprague-Dawley , Modelos Animales de Enfermedad , Páncreas/enzimología , Páncreas/patología
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