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1.
Biochem Biophys Res Commun ; 590: 158-162, 2022 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-34974305

RESUMEN

The progression of chronic kidney disease (CKD) increases the risks of cardiovascular morbidity and end-stage kidney disease. Indoxyl sulfate (IS), which is derived from dietary l-tryptophan by the action of bacterial l-tryptophan indole-lyase (TIL) in the gut, serves as a uremic toxin that exacerbates CKD-related kidney disorder. A mouse model previously showed that inhibition of TIL by 2-aza-l-tyrosine effectively reduced the plasma IS level, causing the recovery of renal damage. In this study, we found that (+)-sesamin and related lignans, which occur abundantly in sesame seeds, inhibit intestinal bacteria TILs. Kinetic studies revealed that (+)-sesamin and sesamol competitively inhibited Escherichia coli TIL (EcTIL) with Ki values of 7 µM and 14 µM, respectively. These Ki values were smaller than that of 2-aza-l-tyrosine (143 µM). Molecular docking simulation of (+)-sesamin- (or sesamol-)binding to EcTIL predicted that these inhibitors potentially bind near the active site of EcTIL, where the cofactor pyridoxal 5'-phosphate is bound, consistent with the kinetic results. (+)-Sesamin is a phytochemical with a long history of consumption and is generally regarded as safe. Hence, dietary supplementation of (+)-sesamin encapsulated in enteric capsules could be a promising mechanism-based strategy to prevent CKD progression. Moreover, the present findings would provide a new structural basis for designing more potent TIL inhibitors for the development of mechanism-based therapeutic drugs to treat CKD.


Asunto(s)
Dioxoles/farmacología , Inhibidores Enzimáticos/farmacología , Microbioma Gastrointestinal , Lignanos/farmacología , Insuficiencia Renal Crónica/enzimología , Insuficiencia Renal Crónica/etiología , Sesamum/química , Triptofanasa/antagonistas & inhibidores , Benzodioxoles/química , Benzodioxoles/farmacología , Dioxoles/química , Microbioma Gastrointestinal/efectos de los fármacos , Cinética , Lignanos/química , Simulación del Acoplamiento Molecular , Fenoles/química , Fenoles/farmacología , Triptofanasa/metabolismo
2.
Acta Crystallogr D Struct Biol ; 74(Pt 8): 748-759, 2018 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-30082510

RESUMEN

Tryptophan indole-lyase (TIL) is a bacterial enzyme which catalyzes the reversible formation of indole and ammonium pyruvate from L-tryptophan. Oxindolyl-L-alanine (OIA) is an inhibitor of TIL, with a Ki value of about 5 µM. The crystal structure of the complex of Proteus vulgaris TIL with OIA has now been determined at 2.1 Šresolution. The ligand forms a closed quinonoid complex with the pyridoxal 5'-phosphate (PLP) cofactor. The small domain rotates about 10° to close the active site, bringing His458 into position to donate a hydrogen bond to Asp133, which also accepts a hydrogen bond from the heterocyclic NH of the inhibitor. This brings Phe37 and Phe459 into van der Waals contact with the aromatic ring of OIA. Mutation of the homologous Phe464 in Escherichia coli TIL to Ala results in a 500-fold decrease in kcat/Km for L-tryptophan, with less effect on the reaction of other nonphysiological ß-elimination substrates. Stopped-flow kinetic experiments of F464A TIL show that the mutation has no effect on the formation of quinonoid intermediates. An aminoacrylate intermediate is observed in the reaction of F464A TIL with S-ethyl-L-cysteine and benzimidazole. A model of the L-tryptophan quinonoid complex with PLP in the active site of P. vulgaris TIL shows that there would be a severe clash of Phe459 (∼1.5 Šapart) and Phe37 (∼2 Šapart) with the benzene ring of the substrate. It is proposed that this creates distortion of the substrate aromatic ring out of plane and moves the substrate upwards on the reaction coordinate towards the transition state, thus reducing the activation energy and accelerating the enzymatic reaction.


Asunto(s)
Alanina/análogos & derivados , Oxindoles/química , Proteus vulgaris/enzimología , Triptofanasa/química , Alanina/química , Alanina/farmacología , Proteínas Bacterianas/química , Biocatálisis , Inhibidores Enzimáticos/química , Escherichia coli/enzimología , Escherichia coli/genética , Modelos Moleculares , Estructura Molecular , Mutación , Oxindoles/farmacología , Especificidad por Sustrato , Triptofanasa/antagonistas & inhibidores
3.
Arch Biochem Biophys ; 560: 20-6, 2014 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-25088962

RESUMEN

We have designed, synthesized and evaluated homotryptophan analogues as possible mechanism-based inhibitors for Escherichia coli tryptophan indole-lyase (tryptophanase, TIL, E.C. 4.1.99.1). As a quinonoid structure is an intermediate in the reaction mechanism of TIL, we anticipated that homologation of the physiological substrate, L-Trp would provide analogues resembling the transition state for ß-elimination, and potentially inhibit TIL. Our results demonstrate that L-homotryptophan (1a) is a moderate competitive inhibitor of TIL, with Ki=67 µM, whereas L-bishomotryptophan (1b) displays more potent inhibition, with Ki=4.7 µM. Pre-steady-state kinetics indicated the formation of an external aldimine and quinonoid with 1a, but only the formation of an external aldimine for 1b, suggesting differences in the inhibition mechanism. These results demonstrate that formation of a quinonoid complex is not required for strong inhibition. In addition, the Trp analogues were evaluated as inhibitors of Salmonella typhimurium Trp synthase. Our results indicate that compound 1b is at least 25-fold more selective toward TIL than Trp synthase. We report that compound 1b is comparable to the most potent inhibitor previously reported, while displaying high selectivity for TIL. Thus, 1b is a potential lead for the development of novel antibacterials.


Asunto(s)
Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Escherichia coli/enzimología , Triptófano/análogos & derivados , Triptófano/farmacología , Triptofanasa/antagonistas & inhibidores , Inhibidores Enzimáticos/síntesis química , Cinética , Triptófano/síntesis química
4.
Chemistry ; 19(51): 17595-602, 2013 Dec 16.
Artículo en Inglés | MEDLINE | ID: mdl-24243627

RESUMEN

Indole is a universal signal that regulates various bacterial behaviors, such as biofilm formation and antibiotic resistance. To generate mechanistic probes of indole signaling and control indole-mediated pathogenic phenotypes in both Gram-positive and Gram-negative bacteria, we have investigated the use of desformylflustrabromine (dFBr) derivatives to generate highly active indole mimetics. We have developed non-microbicidal dFBr derivatives that are 27-2000 times more active than indole in modulating biofilm formation, motility, acid resistance, and antibiotic resistance. The activity of these analogues parallels indole, because they are dependent on temperature, the enzyme tryptophanase TnaA, and the transcriptional regulator SdiA. This investigation demonstrates that molecules based on the dFBr scaffold can alter pathogenic behaviors by mimicking indole-signaling pathways.


Asunto(s)
Hidrocarburos Bromados/química , Alcaloides Indólicos/química , Indoles/química , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/metabolismo , Biopelículas/efectos de los fármacos , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Gramnegativas/fisiología , Bacterias Grampositivas/efectos de los fármacos , Bacterias Grampositivas/fisiología , Hidrocarburos Bromados/síntesis química , Hidrocarburos Bromados/farmacología , Alcaloides Indólicos/síntesis química , Alcaloides Indólicos/farmacología , Indoles/síntesis química , Indoles/farmacología , Fenotipo , Relación Estructura-Actividad , Temperatura , Transactivadores/antagonistas & inhibidores , Transactivadores/metabolismo , Triptofanasa/antagonistas & inhibidores , Triptofanasa/metabolismo
5.
FEBS J ; 280(8): 1807-17, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23438036

RESUMEN

Tryptophan indole lyase (TIL), an enzyme found in Escherichia coli and related enterobacteria, produces indole from l-tryptophan (l-Trp). Indole is a signaling molecule in bacteria, affecting biofilm formation, pathogenicity and antibiotic resistance. ß-(Benzimidazol-1-yl)-l-alanine (BZI-Ala), 2-amino-4-(benzimidazol-1-yl)butyric acid (homo-BZI-Ala) and 2-amino-5-(benzimidazol-1-yl)pentanoic acid (bishomo-BZI-Ala) were synthesized and tested as substrates and inhibitors of TIL. BZI-Ala is a good substrate of TIL, with Km = 300 µm, kcat = 5.6 s(-1) and kcat /Km = 1.9 × 10(4) , similar to l-Trp. BZI-Ala is also a good substrate for H463F mutant TIL, which has very low activity with l-Trp. In contrast, homo-BZI-Ala was found to be a potent competitive inhibitor of TIL, with a Ki of 13.4 µm. However, the higher homolog, bishomo-BZI-Ala, was inactive as an inhibitor of TIL at a concentration of 600 µm, and is thus a much weaker inhibitor. The reaction of TIL with BZI-Ala was too fast to be observed in the stopped-flow spectrophotometer, and shows an aldimine intermediate in the steady state. However, H463F TIL shows equilibrating mixtures of aldimine and quinonoid complexes in the steady state. The spectra of the reaction of TIL with homo-BZI-Ala show a rapidly formed intermediate absorbing at 340 nm, probably a gem-diamine, that decays slowly to form a quinonoid complex absorbing at 494 nm. The potent binding of homo-BZI-Ala may be due to it being a 'bi-product' analog of the indole-α-aminoacrylate complex. These results demonstrate that an amino acid substrate may be converted to a potent inhibitor of TIL simply by homologation, which may be useful in the design of other potent TIL inhibitors.


Asunto(s)
Bencimidazoles/farmacología , Triptófano/análogos & derivados , Triptofanasa/antagonistas & inhibidores , Bencimidazoles/síntesis química , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Escherichia coli/enzimología , Cinética , Triptofanasa/metabolismo
6.
Environ Sci Technol ; 44(6): 2163-8, 2010 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-20158230

RESUMEN

Here we describe results from a proteomic study of protein-nanoparticle interactions to further the understanding of the ecotoxicological impact of silver nanoparticles (AgNPs) in the environment. We identified a number of proteins from Escherichia coli that bind specifically to bare or carbonate-coated AgNPs. Of these proteins, tryptophanase (TNase) was observed to have an especially high affinity for both surface modifications despite its low abundance in E. coli. Purified TNase loses enzymatic activity upon associating with AgNPs, suggesting that the active site may be in the vicinity of the binding site(s). TNase fragments with high affinities for both types of AgNPs were identified using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry. Differences in peptide abundance/presence in mass spectra for the two types of AgNPs suggest preferential binding of some protein fragments based on surface coating. One high-binding protein fragment contained a residue (Arg103) that is part of the active site. Ag adducts were identified for some fragments and found to be characteristic of strong binding to AgNPs rather than association of the fragments with ionic silver. These results suggest a probable mechanism for adhesion of proteins to the most commonly used commercial nanoparticles and highlight the potential effect of nanoparticle surface coating on bioavailability.


Asunto(s)
Proteínas Bacterianas/metabolismo , Escherichia coli/metabolismo , Nanopartículas del Metal/química , Plata/metabolismo , Sitios de Unión/efectos de los fármacos , Escherichia coli/enzimología , Escherichia coli/fisiología , Nanopartículas del Metal/toxicidad , Unión Proteica/efectos de los fármacos , Plata/química , Plata/toxicidad , Propiedades de Superficie , Triptofanasa/antagonistas & inhibidores , Triptofanasa/metabolismo
7.
J Enzyme Inhib Med Chem ; 24(2): 350-5, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-18608755

RESUMEN

Tryptophanase (tryptophan indole-lyase, Tnase, EC 4.1.99.1), a bacterial enzyme with no counterpart in eukaryotic cells, produces from L-tryptophan pyruvate, ammonia and indole. It was recently suggested that indole signaling plays an important role in the stable maintenance of multicopy plasmids. In addition, Tnase was shown to be capable of binding Rcd, a short RNA molecule involved in resolution of plasmid multimers. Binding of Rcd increases the affinity of Tnase for tryptophan, and it was proposed that indole is involved in bacteria multiplication and biofilm formation. Biofilm-associated bacteria may cause serious infections, and biofilm contamination of equipment and food, may result in expensive consequences. Thus, optimal and specific factors that interact with Tnase can be used as a tool to study the role of this multifunctional enzyme as well as antibacterial agents that may affect biofilm formation. Most known quasi-substrates inhibit Tnase at the mM range. In the present work, the mode of Tnase inhibition by the following compounds and the corresponding Ki values were: S-phenylbenzoquinone-L-tryptophan, uncompetitively, 101 microM; alpha-amino-2-(9,10-anthraquinone)-propanoic acid, noncompetitively, 174 microM; L-tryptophane-ethylester, competitively, 52 microM; N-acetyl-L-tryptophan, noncompetitively, 48 microM. S-phenylbenzoquinone-L-tryptophan and alpha-amino-2-(9,10-anthraquinone)-propanoic acid were newly synthesized.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Inhibidores Enzimáticos/química , Escherichia coli/enzimología , Triptofanasa/antagonistas & inhibidores , Antraquinonas/química , ADN Bacteriano/metabolismo , Inhibidores Enzimáticos/farmacología , Escherichia coli/metabolismo , Indoles/química , Cinética , Transducción de Señal , Especificidad por Sustrato , Triptófano/química , Triptofanasa/metabolismo
8.
Mol Microbiol ; 63(1): 1-3, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17163965

RESUMEN

The field of gene regulation underwent a major revolution with the discovery of small non-coding RNAs (sRNAs) and the various roles they play in organisms from bacteria to man. Escherichia coli has more than 60 sRNAs that are transcribed primarily from intergenic regions. They usually target the leader region of mRNAs and prevent their translation. Protein targets are relatively rare. In this issue of Molecular Microbiology, Chant and Summers provide an example of a totally unexpected protein target. They show that dimers of plasmid ColE1 make an sRNA that interacts directly with the enzyme tryptophanase and enhances its affinity for its substrate, tryptophan. A breakdown product, indole, then arrests cell division until the dimers are resolved to monomers. The monomerization helps to prevent plasmid loss. Targeting a catabolic enzyme to buy time for recombination is an amazing example of adaptation, which illustrates the power of a selfish element (a plasmid in this case) to exploit the host cell machinery to its advantage.


Asunto(s)
Escherichia coli/enzimología , Regulación Bacteriana de la Expresión Génica , ARN Bacteriano , Triptofanasa/antagonistas & inhibidores , Escherichia coli/genética , Escherichia coli/metabolismo , ARN Bacteriano/química , ARN Bacteriano/genética , ARN Bacteriano/metabolismo , ARN no Traducido/fisiología , Triptofanasa/metabolismo
9.
J Microbiol ; 43(6): 493-8, 2005 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-16410764

RESUMEN

The safety assessment of Bifidobacterium longum SPM1205 isolated from healthy Koreans and this strain's inhibitory effects on fecal harmful enzymes of intestinal microflora were investigated. The overall safety of this strain was investigated during a feeding trial. Groups of SD rats were orally administered a test strain or commercial reference strain B. longum 1 x 10(9) CFU/kg body weight/day for four weeks. Throughout this time, their feed intake, water intake and live body weight were monitored. Fecal samples were periodically collected to test harmful enzyme activities of intestinal microflora. At the end of the four-week observation period, samples of blood, liver, spleen, kidney, and gut tissues were collected to determine for hematological parameters and histological differences. The results obtained in this experiment demonstrated that four weeks of consumption of this Bifidobacterium strain had no adverse effects on rat's general health status, blood biochemical parameters or histology. Therefore, it is likely to be safe for human use. Fecal harmful enzymes such as beta-glucosidase, beta-glucuronidase, tryptophanase and urease, were effectively inhibited during the administration of the B. longum SPM1205. These results suggested that this B. longum SPM 1205 could be used for humans as a probiotic strain.


Asunto(s)
Bifidobacterium/aislamiento & purificación , Bifidobacterium/fisiología , Heces/microbiología , Probióticos/administración & dosificación , Probióticos/efectos adversos , Adulto , Animales , Secuencia de Bases , Células Sanguíneas , Análisis Químico de la Sangre , Peso Corporal , ADN Bacteriano/química , ADN Ribosómico/química , Ingestión de Líquidos , Ingestión de Alimentos , Heces/química , Tracto Gastrointestinal/microbiología , Glucuronidasa/antagonistas & inhibidores , Humanos , Corea (Geográfico) , Datos de Secuencia Molecular , Ratas , Triptofanasa/antagonistas & inhibidores , Ureasa/antagonistas & inhibidores , beta-Glucosidasa/antagonistas & inhibidores
10.
Can J Microbiol ; 49(7): 443-9, 2003 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-14569285

RESUMEN

We demonstrated previously that genetic inactivation of tryptophanase is responsible for a dramatic decrease in biofilm formation in the laboratory strain Escherichia coli S17-1. In the present study, we tested whether the biochemical inhibition of tryptophanase, with the competitive inhibitor oxindolyl-L-alanine, could affect polystyrene colonization by E. coli and other indole-producing bacteria. Oxindolyl-L-alanine inhibits, in a dose-dependent manner, indole production and biofilm formation by strain S17-1 grown in Luria-Bertani (LB) medium. Supplementation with indole at physiologically relevant concentrations restores biofilm formation by strain S17-1 in the presence of oxindolyl-L-alanine and by mutant strain E. coli 3714 (S17-1 tnaA::Tn5) in LB medium. Oxindolyl-L-alanine also inhibits the adherence of S17-1 cells to polystyrene for a 3-h incubation time, but mutant strain 3714 cells are unaffected. At 0.5 mg/mL, oxindolyl-L-alanine exhibits inhibitory activity against biofilm formation in LB medium and in synthetic urine for several clinical isolates of E. coli, Klebsiella oxytoca, Citrobacter koseri, Providencia stuartii, and Morganella morganii but has no affect on indole-negative Klebsiella pneumoniae strains. In conclusion, these data suggest that indole, produced by the action of tryptophanase, is involved in polystyrene colonization by several indole-producing bacterial species. Indole may act as a signalling molecule to regulate the expression of adhesion and biofilm-promoting factors.


Asunto(s)
Alanina/análogos & derivados , Biopelículas/crecimiento & desarrollo , Escherichia coli/crecimiento & desarrollo , Regulación Bacteriana de la Expresión Génica , Indoles/metabolismo , Transducción de Señal , Triptofanasa/metabolismo , Alanina/farmacología , Adhesión Bacteriana/efectos de los fármacos , Medios de Cultivo , Escherichia coli/efectos de los fármacos , Escherichia coli/fisiología , Oxindoles , Poliestirenos , Triptofanasa/antagonistas & inhibidores , Triptofanasa/genética
11.
Arch Biochem Biophys ; 296(2): 489-96, 1992 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-1632641

RESUMEN

Trifluoroalanine is a mechanism-based inactivator of Escherichia coli tryptophan indole-lyase (tryptophanase) and E. coli tryptophan synthase (R. B. Silverman and R. H. Abeles, 1976, Biochemistry 15, 4718-4723). We have found that indole is able to prevent inactivation of tryptophan indole-lyase by trifluoroalanine. The protection of tryptophan indole-lyase by indole exhibits saturation kinetics, with a KD of 0.03 mM, which is comparable to the KI for inhibition of pyruvate ion formation (0.01 mM) and the Km for L-tryptophan synthesis. Fluoride electrode measurements indicate the formation of 28 mol of fluoride ion per mole of enzyme during inactivation of tryptophan indole-lyase, and 121 mol of fluoride ion are formed per mole of enzyme in the presence of 2 mM indole during the same incubation period. 19F NMR spectra of reaction mixtures of tryptophan indole-lyase and trifluoroalanine showed evidence only for fluoride ion formation, in either the absence or the presence of indole, and difluoropyruvic acid was not detected. The partition ratio, kcat/kinact, is estimated to be 9. Tryptophan indole-lyase in the presence of trifluoroalanine exhibits visible absorption peaks at 446 and 478 nm, which decay at the same rate as inactivation. However, in the presence of 1 mM indole and trifluoralanine, tryptophan indole-lyase exhibits a peak only at 420 nm, and the spectra show a gradual increase at 300-310 nm with incubation. In contrast, tryptophan synthase is not protected by indole from inactivation by trifluoroalanine, and the absorption peak at 408 nm for the tryptophan synthase-trifluoroalanine complex is unaffected by indole. These results demonstrate that inactivation of tryptophan indole-lyase occurs via a catalytically competent species, probably the beta,beta-difluoro-alpha-aminoacrylate intermediate, which can be partitioned from inactivation to products by a reactive aromatic nucleophile, indole.


Asunto(s)
Alanina/análogos & derivados , Escherichia coli/enzimología , Indoles/farmacología , Triptófano Sintasa/antagonistas & inhibidores , Triptofanasa/antagonistas & inhibidores , Alanina/farmacología , Cromatografía Líquida de Alta Presión , Activación Enzimática/efectos de los fármacos , Fluoruros/metabolismo , Cinética , Espectroscopía de Resonancia Magnética , Piruvatos/metabolismo , Ácido Pirúvico , Espectrofotometría
12.
Mol Biol (Mosk) ; 25(3): 752-60, 1991.
Artículo en Ruso | MEDLINE | ID: mdl-1944257

RESUMEN

Inhibition of tryptophanase-catalyzed decomposition of S-(o-nitrophenyl)-L-cysteine by a variety of amino acids has been investigated. For amino acids similar to the natural substrate and for those having minimal steric requirements for the side chain, the linear correlation exists between-RTlnKi and side chain hydrophobicity. L-ornithine and L-arginine are anomalously potent inhibitors taking into account low hydrophobicity of their side chains. This can be explained by an interaction between a positively charged group of the side chain of L-arginine or L-ornithine and a nucleophilic group of the active site. The comparison of affinity of tryptophanase for L-phenylalanine and L-homophenylalanine indicates that there is a special locus in the active site where aromatic groups are bound and oriented approximately parallel to the cofactor plane experiencing no steric hindrance. For a large number of amino acids the rates of the enzymic alpha-proton exchange in 2H2O are comparable with the rate of the reaction with L-tryptophan. Very low rate of alpha-proton exchange observed with L-alanine is an exception.


Asunto(s)
Aminoácidos/metabolismo , Triptofanasa/metabolismo , Animales , Sitios de Unión , Bovinos , Cinética , Conformación Proteica , Triptofanasa/antagonistas & inhibidores
13.
Biochimie ; 71(4): 545-50, 1989 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-2503059

RESUMEN

Tryptophanase from E. coli displays positive CD in the coenzyme absorption bands at 337 and 420 nm. Breaking of the internal coenzyme-lysine imine bond upon reaction with hydroxylamine or amino-oxyacetate is accompanied by a strong diminution of the positive CD. Interaction of tryptophanase with L-threonine and beta-phenyl-DL-serine(threo form) leads to a decrease in absorbance at 337 nm and to an increase at 425 nm. This is associated with inversion of the CD sign, i.e. with disappearance of the positive CD in the 420-nm band and its replacement by a negative CD. L-Phenylalanine, alpha-methyl-DL-serine and D-alanine cause an increase in absorbance at 425-430 nm and a diminution of the positive CD in this band. In the presence of D-alanine and indole a negative CD appears in the 400-450 nm region. It is inferred that an external coenzyme-quasisubstrate aldimine is formed on interaction of the above amino acids with the enzyme. L-Alanine and oxindolyl-L-alanine evoke an intense narrow absorption band at 500 nm ascribed to a quinonoid intermediate; a positive CD is observed in this band. The dissymmetry factor delta A/A in the 500-nm band is much smaller than that in the absorption bands of the unliganded enzyme. Inversion of the CD sign on formation of the external aldimine and diminution of the dissymmetry factor in the quinonoid band indicate that reorientations of the coenzyme occur in the course of the catalytic action of tryptophanase.


Asunto(s)
Escherichia coli/enzimología , Liasas/metabolismo , Triptofanasa/metabolismo , Aminoácidos/metabolismo , Aminoácidos/farmacología , Dicroismo Circular , Coenzimas/análisis , Hidroxilamina , Hidroxilaminas/farmacología , Conformación Proteica , Espectrofotometría , Triptofanasa/antagonistas & inhibidores
14.
Biochemistry ; 27(19): 7339-44, 1988 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-3061452

RESUMEN

Analysis of the pH dependence of the kinetic parameters and competitive inhibitor Ki values for tryptophan indole-lyase suggests two enzymic groups must be unprotonated in order to facilitate binding and catalysis of tryptophan. The V/K for tryptophan and the pKi for oxindolyl-L-alanine, a putative transition state analogue and competitive inhibitor, decrease below two pK values of 7.6 and 6.0, while the Ki for L-alanine, also a competitive inhibitor, is 3300-fold larger (20 mM) than that for oxindolyl-L-alanine and increases below a single pK of 7.6. A single pK of 7.6 is also observed in the V/K profile for the alternate substrate, S-methyl-L-cysteine. Therefore, the enzymic group with a pK of 7.6 is responsible for proton abstraction at the 2-position of tryptophan, while the enzymic group with a pK of 6.0 interacts with the indole portion of tryptophan and probably catalyzes formation of the indolenine tautomer of tryptophan (in concert with proton transfer to C-3 of indole from the group with pK 7.6) to facilitate carbon-carbon bond cleavage and elimination of indole. The pH variation of the primary deuterium isotope effects for proton abstraction at the 2-position of tryptophan (DV = 2.5 and D(V/Ktrp) = 2.8) are pH independent, while the Vmax for tryptophan or S-methyl-L-cysteine is the same and also pH independent. Thus, substrates bind only to the correctly protonated form of the enzyme. Further, tryptophan is not sticky, and the pK values observed in both V/K profiles are the correct ones.(ABSTRACT TRUNCATED AT 250 WORDS)


Asunto(s)
Deuterio , Escherichia coli/enzimología , Liasas/metabolismo , Fosfato de Piridoxal/farmacología , Triptofanasa/metabolismo , Alanina/análogos & derivados , Alanina/farmacología , Unión Competitiva , Catálisis , Cisteína/análogos & derivados , Cisteína/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Oxindoles , Solventes , Triptófano/metabolismo , Triptofanasa/antagonistas & inhibidores
15.
J Gen Microbiol ; 133(11): 3265-70, 1987 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-2833565

RESUMEN

Low concentrations of urea, which did not inhibit the synthesis of the catabolite nonrepressible enzyme alkaline phosphatase in Vibrio cholerae, or markedly affect its overall growth, specifically inhibited the expression of the tryptophanase operon in a temperature-dependent manner. However, in contrast to what is found in Escherichia coli, this urea-induced inhibition of tryptophanase synthesis in V. cholerae could be almost completely relieved by exogenously added cyclic AMP. The possible mechanism of the process is discussed.


Asunto(s)
Fosfatasa Alcalina/biosíntesis , AMP Cíclico/farmacología , Liasas/biosíntesis , Triptofanasa/biosíntesis , Urea/farmacología , Vibrio cholerae/enzimología , Fosfatasa Alcalina/antagonistas & inhibidores , Triptofanasa/antagonistas & inhibidores , Vibrio cholerae/efectos de los fármacos
16.
Biochem Biophys Res Commun ; 137(3): 964-9, 1986 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-3524569

RESUMEN

Tryptophanase has an essential tyrosyl residue/active site which can be modified by tetranitromethane. Pyridoxal 5'-phosphate can prevent this modification efficiently, whereas pyridoxal 5'-phosphate N-oxide cannot, indicating that the free pyridinium N is required for the interaction of the coenzyme with the tyrosyl residue, probably via a hydrogen bond. The weakened binding of the coenzyme to the modified enzyme was confirmed on gel filtration, the modified enzyme being dissociated from the coenzyme seven-fold faster than the native enzyme. Furthermore, absorption spectral analyses demonstrated that the modified enzyme can catalyze the transaldimination step, but fails to abstract the alpha-H of substrates. The tyrosyl residue, therefore, not only participates in coenzyme binding, but also contributes to alpha-H labilization.


Asunto(s)
Liasas/metabolismo , Fosfato de Piridoxal/metabolismo , Triptofanasa/metabolismo , Sitios de Unión , Catálisis , Escherichia coli/enzimología , Cinética , Fosfato de Piridoxal/análogos & derivados , Fosfato de Piridoxal/farmacología , Análisis Espectral , Relación Estructura-Actividad , Tetranitrometano/farmacología , Triptofanasa/antagonistas & inhibidores , Tirosina/metabolismo
18.
J Biol Chem ; 260(27): 14665-70, 1985 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-3902836

RESUMEN

Oxindolyl-L-alanine and 2,3-dihydro-L-tryptophan, which are analogs of a proposed reaction intermediate, are potent competitive inhibitors of both tryptophanase and the alpha 2 beta 2 complex of tryptophan synthase (Phillips, R. S., Miles, E. W., and Cohen, L. A. (1984) Biochemistry 23, 6228-6234). Since these inhibitors can exist in two diastereoisomeric forms, which we expected to differ in inhibitory potency, we have separated the diastereoisomers of 2,3-dihydro-L-tryptophan by preparative high performance liquid chromatography. These diastereoisomers were designated "A" and "B" in order of elution from the high performance liquid chromatography column. Diastereoisomer B is a potent competitive inhibitor of the alpha 2 beta 2 complex of tryptophan synthase with KI = 6 microM at pH 7.8 and 25 degrees C. In contrast, diastereoisomer A is a weak competitive inhibitor, with KI = 940 microM under these conditions. With tryptophanase, the situation is reversed; diastereoisomer A is a potent slow-binding competitive inhibitor of tryptophanase with KI = 2 microM at pH 8.0 and 25 degrees C, while diastereoisomer B is much weaker with KI = 1600 microM under these conditions. These results not only provide additional support for the proposal that the indolenine tautomer of tryptophan is an intermediate in the reactions catalyzed by both enzymes but also suggest that these enzymes catalyze their respective reactions via enantiomeric indolenine intermediates.


Asunto(s)
Liasas/antagonistas & inhibidores , Triptófano Sintasa/antagonistas & inhibidores , Triptófano/análogos & derivados , Triptofanasa/antagonistas & inhibidores , Cromatografía Líquida de Alta Presión , Dicroismo Circular , Escherichia coli/enzimología , Cinética , Espectrometría de Masas , Estereoisomerismo , Relación Estructura-Actividad , Triptófano/farmacología
19.
Eur J Biochem ; 149(1): 129-33, 1985 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-3888623

RESUMEN

Holotryptophanase inactivated by oxidation of cysteinyl residues showed a different absorption spectrum from the native enzyme. At pH 8.0, the native enzyme preferentially existed as a 337-nm species (active form), whereas in the inactive enzyme a 420-nm species (inactive form) was dominant. During the reactivation of the enzyme by reduction with dithiothreitol, an increase at 337 nm and a decrease at 420 nm were observed with concomitant increase in enzymatic activity, which was accompanied by the appearance of two cysteinyl residues per monomer. Specific S-cyanylation of cysteinyl residues by nitrothiocyanobenzoic-acid-inactivated apotryptophanase with the modification of one cysteinyl residue per monomer, whereas holotryptophanase was highly resistant to inactivation with nitrothiocyanobenzoic acid. The essential role of the active-site-bound pyridoxal 5'-phosphate in protection against inactivation was confirmed by the agreement of the K1/2 (protection) of 5.0 microM for pyridoxal 5'-phosphate with Km of 2.0 microM in enzyme catalysis. The inactivation by nitrothiocyanobenzoic acid caused a similar shift in the equilibrium between the 337-nm species and 420-nm species, i.e. decrease of the 337-nm species and increase of the 420-nm species. From the pH dependence of the equilibrium between these two species, pKa of 7.9 and 7.4 was obtained for the inactive and the dithiothreitol-activated enzyme, respectively, indicating that cysteinyl residue(s) participated in lowering the pKa of the interconversion between the 337-nm species (active form) and 420-nm species (inactive form). The possible role of cysteinyl residues in the function of tryptophanase is discussed.


Asunto(s)
Cisteína/metabolismo , Liasas/metabolismo , Triptofanasa/metabolismo , Catálisis , Fenómenos Químicos , Química , Cisteína/análisis , Ditiotreitol/farmacología , Escherichia coli/enzimología , Concentración de Iones de Hidrógeno , Cinética , Oxidación-Reducción , Manejo de Especímenes , Tiocianatos/farmacología , Triptofanasa/antagonistas & inhibidores
20.
J Biochem ; 97(3): 851-7, 1985 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-3894342

RESUMEN

Tryptophanase purified from Escherichia coli B/It7-A was irreversibly inactivated by 3-bromopyruvate following pseudo-first-order kinetics. The inactivation rate for the holoenzyme tended to saturate as the concentration f bromopyruvate increased. L-Alanine and DL-3-phenylserine, potent competitive inhibitors with respect to L-tryptophan decomposition, protected the enzyme from inactivation. Titration of SH groups in the enzyme protein with 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB) showed that modification of one SH group per enzyme subunit resulted in a complete inactivation. When the enzyme was subjected to bromopyruvate-modification following pretreatment with DTNB, the activity was almost completely restored upon reduction with dithiothreitol. Modification of the enzyme with bromopyruvate quenched the absorption peak near 500 nm, characteristic of a quinoidal structure formed by labilization of the alpha-proton. These results support the possibility that bromopyruvate reacts with the enzyme as an affinity labeling agent.


Asunto(s)
Marcadores de Afinidad , Liasas/antagonistas & inhibidores , Piruvatos/farmacología , Triptofanasa/antagonistas & inhibidores , Sitios de Unión , Fenómenos Químicos , Química , Ácido Ditionitrobenzoico , Escherichia coli/enzimología , Cinética , Espectrofotometría , Compuestos de Sulfhidrilo/análisis , Temperatura , Triptofanasa/metabolismo
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