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Vibrational circular dichroism as a probe of solid-state organisation of derivatives of cyclic ß-amino acids: Cis- and trans-2-aminocyclobutane-1-carboxylic acid.
Declerck, Valérie; Pérez-Mellor, Ariel; Guillot, Régis; Aitken, David J; Mons, Michel; Zehnacker, Anne.
Afiliación
  • Declerck V; CP3A Organic Synthesis Group and Services Communs, ICMMO, UMR 8182, Université Paris Sud, Université Paris-Saclay, Orsay, France.
  • Pérez-Mellor A; Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Univ. Paris-Sud, Université Paris-Saclay, Orsay, France.
  • Guillot R; CP3A Organic Synthesis Group and Services Communs, ICMMO, UMR 8182, Université Paris Sud, Université Paris-Saclay, Orsay, France.
  • Aitken DJ; CP3A Organic Synthesis Group and Services Communs, ICMMO, UMR 8182, Université Paris Sud, Université Paris-Saclay, Orsay, France.
  • Mons M; Laboratoire Interactions Dynamiques et Lasers (LIDYL), Université Paris Saclay, Paris, France.
  • Zehnacker A; Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Univ. Paris-Sud, Université Paris-Saclay, Orsay, France.
Chirality ; 31(8): 547-560, 2019 08.
Article en En | MEDLINE | ID: mdl-31241803
ABSTRACT
Peptide models built from cis- and trans-2-aminocyclobutane-1-carboxylic acids (ACBCs) are studied in the solid phase by combining Fourier-transform infrared spectroscopy (FTIR) absorption spectroscopy, vibrational circular dichroism (VCD), and quantum chemical calculations using density functional theory (DFT). The studied systems are N-tert-butyloxycarbonyl (Boc) derivatives of 2-aminocyclobutanecarboxylic acid (ACBC) benzylamides, namely Boc-(cis-ACBC)-NH-Bn and Boc-(trans-ACBC)-NH-Bn. These two diastereomers show very different VCD signatures and intensities, which of the trans-ACBC derivative being one order of magnitude larger in the region of the ν (CO) stretch. The spectral signature of the cis-ACBC derivative is satisfactorily reproduced by that of the monomer extracted from the solid-state geometry of related ACBC derivatives, which shows that no long-range effects are implicated for this system. In terms of hydrogen bonds, the geometry of this monomer is intermediate between the C6 and C8 structures (exhibiting a 6- or 8-membered cyclic NH⋯O hydrogen bond) previously evidenced in the gas phase. The benzyl group must be in an extended geometry to reproduce satisfactorily the shape of the VCD spectrum in the ν (CO) range, which qualifies VCD as a potential probe of dispersion interaction. In contrast, reproducing the IR and VCD spectrum of the trans-ACBC derivative requires clusters larger than four units, exhibiting strong intermolecular H-bonding patterns. A qualitative agreement is obtained for a tetramer, although the intensity enhancement is not reproduced. These results underline the sensitivity of VCD to the long-range organisation in the crystal.
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Texto completo: 1 Base de datos: MEDLINE Asunto principal: Aminoácidos Cíclicos Tipo de estudio: Qualitative_research Idioma: En Revista: Chirality Asunto de la revista: BIOLOGIA MOLECULAR / QUIMICA Año: 2019 Tipo del documento: Article

Texto completo: 1 Base de datos: MEDLINE Asunto principal: Aminoácidos Cíclicos Tipo de estudio: Qualitative_research Idioma: En Revista: Chirality Asunto de la revista: BIOLOGIA MOLECULAR / QUIMICA Año: 2019 Tipo del documento: Article