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Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.
Strelak, David; Jiménez-Moreno, Amaya; Vilas, José L; Ramírez-Aportela, Erney; Sánchez-García, Ruben; Maluenda, David; Vargas, Javier; Herreros, David; Fernández-Giménez, Estrella; de Isidro-Gómez, Federico P; Horacek, Jan; Myska, David; Horacek, Martin; Conesa, Pablo; Fonseca-Reyna, Yunior C; Jiménez, Jorge; Martínez, Marta; Harastani, Mohamad; Jonic, Slavica; Filipovic, Jiri; Marabini, Roberto; Carazo, José M; Sorzano, Carlos O S.
Afiliación
  • Strelak D; Faculty of Informatics, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic.
  • Jiménez-Moreno A; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Vilas JL; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Ramírez-Aportela E; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Sánchez-García R; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Maluenda D; Oxford Protein Informatics Group, Department of Statistics, University of Oxford, Oxford OX1 3LB, UK.
  • Vargas J; Departament de Física Aplicada, Universitat de Barcelona (UB), Martí i Franquès 1, 08028 Barcelona, Spain.
  • Herreros D; Departamento de Óptica, Universidad Complutense de Madrid, Plaza de Ciencias 1, 28040 Madrid, Spain.
  • Fernández-Giménez E; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • de Isidro-Gómez FP; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Horacek J; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Myska D; Institute of Computer Science, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic.
  • Horacek M; Institute of Computer Science, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic.
  • Conesa P; Institute of Computer Science, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic.
  • Fonseca-Reyna YC; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Jiménez J; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Martínez M; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Harastani M; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Jonic S; IMPMC-UMR 7590 CNRS, Sorbonne Université, Muséum National d'Histoire Naturelle, 4 Place Jussieu, 75005 Paris, France.
  • Filipovic J; IMPMC-UMR 7590 CNRS, Sorbonne Université, Muséum National d'Histoire Naturelle, 4 Place Jussieu, 75005 Paris, France.
  • Marabini R; Institute of Computer Science, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic.
  • Carazo JM; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
  • Sorzano COS; Spanish National Centre for Biotechnology, Spanish National Research Council, Calle Darwin, 3, 28049 Madrid, Spain.
Molecules ; 26(20)2021 Oct 15.
Article en En | MEDLINE | ID: mdl-34684805
ABSTRACT
Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.
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Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: Molecules Asunto de la revista: BIOLOGIA Año: 2021 Tipo del documento: Article
Texto completo
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XML
PubMed Links
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Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: Molecules Asunto de la revista: BIOLOGIA Año: 2021 Tipo del documento: Article