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The UCSC Genome Browser database: 2023 update.
Nassar, Luis R; Barber, Galt P; Benet-Pagès, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S; Lee, Brian T; Lee, Christopher M; Muthuraman, Pranav; Nguy, Beagan; Pereira, Tiana; Nejad, Parisa; Perez, Gerardo; Raney, Brian J; Schmelter, Daniel; Speir, Matthew L; Wick, Brittney D; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Haeussler, Maximilian; Kent, W James.
Afiliación
  • Nassar LR; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Barber GP; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Benet-Pagès A; Institute of Neurogenomics, Helmholtz Zentrum München GmbH - German Research Center for Environmental Health, 85764Neuherberg, Germany.
  • Casper J; Medical Genetics Center (Medizinisch Genetisches Zentrum), Munich 80335, Germany.
  • Clawson H; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Diekhans M; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Fischer C; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Gonzalez JN; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Hinrichs AS; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Lee BT; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Lee CM; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Muthuraman P; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Nguy B; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Pereira T; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Nejad P; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Perez G; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Raney BJ; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Schmelter D; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Speir ML; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Wick BD; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Zweig AS; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Haussler D; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Kuhn RM; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Haeussler M; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
  • Kent WJ; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Nucleic Acids Res ; 51(D1): D1188-D1195, 2023 01 06.
Article en En | MEDLINE | ID: mdl-36420891
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year has seen an emphasis in clinical data, with new tracks and an expanded Recommended Track Sets feature on hg38 as well as the addition of a single cell track group. SARS-CoV-2 continues to remain a focus, with regular annotation updates to the browser and continued curation of our phylogenetic sequence placing tool, hgPhyloPlace, whose tree has now reached over 12M sequences. Our GenArk resource has also grown, offering over 2500 hubs and a system for users to request any absent assemblies. We have expanded our bigBarChart display type and created new ways to visualize data via bigRmsk and dynseq display. Displaying custom annotations is now easier due to our chromAlias system which eliminates the requirement for renaming sequence names to the UCSC standard. Users involved in data generation may also be interested in our new tools and trackDb settings which facilitate the creation and display of their custom annotations.
Asunto(s)

Texto completo: 1 Base de datos: MEDLINE Asunto principal: Genómica / Bases de Datos Genéticas Idioma: En Revista: Nucleic Acids Res Año: 2023 Tipo del documento: Article

Texto completo: 1 Base de datos: MEDLINE Asunto principal: Genómica / Bases de Datos Genéticas Idioma: En Revista: Nucleic Acids Res Año: 2023 Tipo del documento: Article