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MultipleXed Population Selection and Enrichment single nucleus RNA sequencing (XPoSE-seq) enables sample identity retention during transcriptional profiling of rare populations.
Savell, Katherine E; Madangopal, Rajtarun; Saravanan, Padmashri; Palaganas, Ryan G; Woods, Kareem D; Thompson, Drake J; Drake, Olivia R; Brenner, Megan B; Weber, Sophia J; Van Leer, Elise; Choi, Jae H; Martin, Toni L; Martin, Jody C; Steinberg, Mia K; Austin, James W; Charendoff, Chloé I; Hope, Bruce T.
Afiliación
  • Savell KE; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Madangopal R; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Saravanan P; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Palaganas RG; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Woods KD; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Thompson DJ; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Drake OR; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Brenner MB; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Weber SJ; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Van Leer E; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Choi JH; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Martin TL; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
  • Martin JC; BD Biosciences, San José, CA 95131.
  • Steinberg MK; BD Biosciences, San José, CA 95131.
  • Austin JW; BD Biosciences, San José, CA 95131.
  • Charendoff CI; BD Biosciences, San José, CA 95131.
  • Hope BT; Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224.
bioRxiv ; 2023 Sep 29.
Article en En | MEDLINE | ID: mdl-38196637
ABSTRACT
Single nucleus RNA-sequencing is critical in deciphering tissue heterogeneity and identifying rare populations. However, current high throughput techniques are not optimized for rare target populations and require tradeoffs in design due to feasibility. We provide a novel snRNA pipeline, MulipleXed Population Selection and Enrichment snRNA-sequencing (XPoSE-seq), to enable targeted snRNA-seq experiments and in-depth transcriptomic characterization of rare target populations while retaining individual sample identity.

Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2023 Tipo del documento: Article

Texto completo: 1 Base de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2023 Tipo del documento: Article