Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria).
Sci Data
; 11(1): 1011, 2024 Sep 18.
Article
en En
| MEDLINE
| ID: mdl-39294147
ABSTRACT
The upas tree (Antiaris toxicaria Lesch.) is a medically important plant that contains various specialized metabolites with significant bioactivity. The lack of a reference genome hinders the in-depth study as well as rational exploitation and conservation of this plant. Here, we present the first holotype-resolved chromosome-scale genome of the upas tree. The assembled genome consisted of 26 chromosomes that contain 1.34 Gb of sequencing data with a contig N50 length of 60 Mb. Genome annotation identified 43,500 protein-coding genes in the upas tree genome, of which 98.75% were functionally annotated. This high-quality reference genome will lay the foundation for further studies on the evolution and functional genomics of the upas tree.
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Base de datos:
MEDLINE
Asunto principal:
Genoma de Planta
Idioma:
En
Revista:
Sci Data
Año:
2024
Tipo del documento:
Article