Reply to the 'Comment on "Relating side chain organization of PNIPAm with its conformation in aqueous methanol"' by N. van der Vegt and F. Rodriguez-Ropero, Soft Matter, 2017, 13, DOI: 10.1039/C6SM02139E.

In a comment van der Vegt and Rodriguez-Ropero (vdVRR) challenged our explanation of the co-non-solvency effect of PNIPAm in aqueous methanol solutions. They argue, based on a careful selection of published studies including some of their own, that direct repulsions between the different constituents are sufficient to understand this phenomenon. According to vdVRR, the emerging view of entropic collapse, put forward by Flory (1910-1985) to explain common polymers in poor solvents, would be enough to explain co-non-solvency. In this reply we attempt to bring this discussion into firmer grounds. We provide a more comprehensive view of available experimental, numerical and theoretical results and review basic concepts of physical chemistry and of statistical mechanics of polymer collapse that show how methanol mediated attractions between chain monomers are required to understand this fascinating behavior.

Effect of mesoscale ordering on the density of States of polymeric semiconductors.

A multiscale simulation scheme, which incorporates both long-range conformational disorder and local molecular ordering, is proposed for predicting large-scale morphologies and charge transport properties of polymeric semiconductors. Using poly(3-hexylthiophene) as an example, it is illustrated how the energy landscape and its spatial correlations evolve with increasing degree of structural order in mesophases with amorphous, uniaxial, and biaxial nematic ordering. It is shown that the formation of low-lying energy states in more ordered systems is mostly due to larger (on average) conjugation lengths and not due to electrostatic interactions. The proposed scheme is general and can be applied to a wide range of polymeric organic materials.

From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

We review pro and contra of the hypothesis that generic polymer properties of topological constraints are behind many aspects of chromatin folding in eukaryotic cells. For that purpose, we review, first, recent theoretical and computational findings in polymer physics related to concentrated, topologically simple (unknotted and unlinked) chains or a system of chains. Second, we review recent experimental discoveries related to genome folding. Understanding in these fields is far from complete, but we show how looking at them in parallel sheds new light on both.

Free Standing Dry and Stable Nanoporous Polymer Films Made through Mechanical Deformation.

A new straight forward approach to create nanoporous polymer membranes with well defined average pore diameters is presented. The method is based on fast mechanical deformation of highly entangled polymer films at high temperatures and a subsequent quench far below the glass transition temperature Tg . The process is first designed generally by simulation and then verified for the example of polystyrene films. The methodology does not need any chemical processing, supporting substrate, or self assembly process and is solely based on polymer inherent entanglement effects. Pore diameters are of the order of ten polymer reptation tube diameters. The resulting membranes are stable over months at ambient conditions and display remarkable elastic properties.

Acrylic Paints: An Atomistic View of Polymer Structure and Effects of Environmental Pollutants.

Most of the artwork and cultural heritage objects are stored in museums under conditions that are difficult to monitor. While advanced technologies aim to control and prevent the degradation of cultural heritage objects in line with preventive conservation measures, there is much to be learned in terms of the physical processes that lead to the degradation of the synthetic polymers that form the basis of acrylic paints largely used in contemporary art. In museums, stored objects are often exposed to temperature and relative humidity fluctuations as well as airborne pollutants such as volatile organic compounds (VOCs). The glass transition of acrylic paints is below room temperature; while low temperatures may cause cracking, at high temperatures the sticky surface of the paint becomes vulnerable to pollutants. Here we develop fully atomistic models to understand the structure of two types of acrylic copolymers and their interactions with VOCs and water. The structure and properties of acrylic copolymers are slighlty modified by incorporation of a monomer with a longer side chain. With favorable solvation free energies, once absorbed, VOCs and water interact with the polymer side chains to form hydrogen bonds. The cagelike structure of the polymers prevents the VOCs and water to diffuse freely below the glass transition temperature. In addition, our model forms the foundation for developing mesoscopic and continuum models that will allow us to access longer time and length scales to further our understanding of the degradation of artwork.

Statistics of polymer rings in the melt: a numerical simulation study.

Topologically constrained molecular systems are relevant to many areas of physics and biology, from the collapse of a polymer gel to the existence of chromosome territories. As a model system for the study of such unusual interactions, we simulated melts of unconcatenated polymer rings, where topology directly influences not only dynamic properties, as is the case for linear chains, but also the statics. In order to access the relatively large chain lengths required to observe significant effects, we implemented an efficient, on-lattice Monte Carlo model allowing for fast relaxation thanks to non-local moves which randomly displace kinks along the polymer contour. The sufficiently long rings are shown to behave as compact objects, their size scaling as N(1/3) for large chain length N; this observation is supported by measurements of several other static properties. The entanglement length of the rings' linear counterparts is used to characterize the topological constraints, allowing for an estimate of the onset of the regime where rings are compact.

Systematic comparison of model polymer nanocomposite mechanics.

Polymer nanocomposites render a range of outstanding materials from natural products such as silk, sea shells and bones, to synthesized nanoclay or carbon nanotube reinforced polymer systems. In contrast to the fast expanding interest in this type of material, the fundamental mechanisms of their mixing, phase behavior and reinforcement, especially for higher nanoparticle content as relevant for bio-inorganic composites, are still not fully understood. Although polymer nanocomposites exhibit diverse morphologies, qualitatively their mechanical properties are believed to be governed by a few parameters, namely their internal polymer network topology, nanoparticle volume fraction, particle surface properties and so on. Relating material mechanics to such elementary parameters is the purpose of this work. By taking a coarse-grained molecular modeling approach, we study an range of different polymer nanocomposites. We vary polymer nanoparticle connectivity, surface geometry and volume fraction to systematically study rheological/mechanical properties. Our models cover different materials, and reproduce key characteristics of real nanocomposites, such as phase separation, mechanical reinforcement. The results shed light on establishing elementary structure, property and function relationship of polymer nanocomposites.

A macromolecule in a solvent: adaptive resolution molecular dynamics simulation.

The authors report adaptive resolution molecular dynamics simulations of a flexible linear polymer in solution. The solvent, i.e., a liquid of tetrahedral molecules, is represented within a certain radius from the polymer's center of mass with a high level of detail, while a lower coarse-grained resolution is used for the more distant solvent. The high resolution sphere moves with the polymer and freely exchanges molecules with the low resolution region through a transition regime. The solvent molecules change their resolution and number of degrees of freedom on the fly. The authors show that their approach correctly reproduces the static and dynamic properties of the polymer chain and surrounding solvent.

Equilibrium interaction of solid surfaces across a polymer melt.

Forces across polymer melts are poorly understood despite their importance for adhesion and fabricating composite materials. Using an atomic force microscope (AFM), this interaction was measured for poly(dimethyl siloxane) (PDMS). The structure of the polymer at the surface changed during the first approximately 10 h. Afterward, short-range attractive forces were observed with short-chain PDMS (M(w) = 4200 g/mol). Using PDMS with a molecular weight (M(w) = 18 000 g/mol) above the entanglement limit, we measured a monotonically decaying repulsive force, which indicates that a quasi-immobilized layer had formed at the solid surface. Due to the small radius of curvature of the tip, forces could be measured in equilibrium.