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1.
Biomacromolecules ; 20(2): 893-903, 2019 02 11.
Artigo em Inglês | MEDLINE | ID: mdl-30554514

RESUMO

Model hemicellulose-cellulose composites that mimic plant cell wall polymer interactions were prepared by synthesizing deuterated bacterial cellulose in the presence of glucomannan or xyloglucan. Dilute acid pretreatment (DAP) of these materials was studied using small-angle neutron scattering, X-ray diffraction, and sum frequency generation spectroscopy. The macrofibril dimensions of the pretreated cellulose alone were smaller but with similar entanglement of macrofibrillar network as native cellulose. In addition, the crystallite size dimension along the (010) plane increased. Glucomannan-cellulose underwent similar changes to cellulose, except that the macrofibrillar network was more entangled after DAP. Conversely, in xyloglucan-cellulose the macrofibril dimensions and macrofibrillar network were relatively unchanged after pretreatment, but the cellulose Iß content was increased. Our results point to a tight interaction of xyloglucan with microfibrils while glucomannan only interacts with macrofibril surfaces. This study provides insight into roles of different hemicellulose-cellulose interactions and may help in improving pretreatment processes or engineering plants with decreased recalcitrance.


Assuntos
Celulose/química , Polissacarídeos/química , Parede Celular/química , Glucanos/química , Mananas/química , Plantas/química , Espalhamento a Baixo Ângulo , Difração de Raios X/métodos , Xilanos/química
2.
Soft Matter ; 15(42): 8437-8440, 2019 Oct 30.
Artigo em Inglês | MEDLINE | ID: mdl-31599318

RESUMO

We report a method to deposit amyloid fibrils on a substrate creating gradients in orientation and coverage on demand. For this purpose, we adapt a colloidal self-assembly method at liquid-liquid interfaces to deposit amyloid fibrils on a substrate from the water-hexane interface, while simultaneously compressing it. The amyloid fibril layers orient perpendicularly to the compression, ranging from isotropic to nematic distributions. We furthermore observe reproducible transitions from a monolayer to a bilayer and from a bilayer to multilayers with increasing surface pressures. The creation of each new layer is accompanied by a systematic drop in the structural order of the system, which is however regained upon further compression. This method shows great potential for overcoming the thin-film engineering challenges associated with the manipulation of sticky amyloid fibrils, and allows their ex situ visualisation under compression at the fluid-fluid interface, a situation relevant to understand the propagation of amyloid-related diseases, their functional role in biological systems, and their potential for technological applications.


Assuntos
Amiloide/metabolismo , Hexanos/química , Membranas Artificiais , Conformação Proteica , Água/química
3.
Biotechnol Lett ; 40(2): 303-308, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29124514

RESUMO

OBJECTIVE: To develop and prototype a high-throughput microplate assay to assess anaerobic microorganisms and lignocellulosic biomasses in a rapid, cost-effective screen for consolidated bioprocessing potential. RESULTS: Clostridium thermocellum parent Δhpt strain deconstructed Avicel to cellobiose, glucose, and generated lactic acid, formic acid, acetic acid and ethanol as fermentation products in titers and ratios similar to larger scale fermentations confirming the suitability of a plate-based method for C. thermocellum growth studies. C. thermocellum strain LL1210, with gene deletions in the key central metabolic pathways, produced higher ethanol titers in the Consolidated Bioprocessing (CBP) plate assay for both Avicel and switchgrass fermentations when compared to the Δhpt strain. CONCLUSION: A prototype microplate assay system is developed that will facilitate high-throughput bioprospecting for new lignocellulosic biomass types, genetic variants and new microbial strains for bioethanol production.


Assuntos
Reatores Biológicos/microbiologia , Clostridium thermocellum/metabolismo , Etanol/metabolismo , Lignina/metabolismo , Panicum , Anaerobiose , Biocombustíveis , Biomassa , Fermentação , Ensaios de Triagem em Larga Escala , Panicum/química , Panicum/metabolismo
4.
Molecules ; 21(6)2016 May 24.
Artigo em Inglês | MEDLINE | ID: mdl-27231888

RESUMO

We report the synthesis of cerium oxide, cobalt oxide, mixed cerium, and cobalt oxides and a Ce-Co/Al2O3 membrane, which are employed as catalysts for the catalytic wet oxidation (CWO) reaction process and the removal of formaldehyde from industrial effluents. Formaldehyde is present in numerous waste streams from the chemical industry in a concentration low enough to make its recovery not economically justified but high enough to create an environmental hazard. Common biological degradation methods do not work for formaldehyde, a highly toxic but refractory, low biodegradability substance. The CWO reaction is a recent, promising alternative that also permits much lower temperature and pressure conditions than other oxidation processes, resulting in economic benefits. The CWO reaction employing Ce- and Co-containing catalysts was carried out inside a slurry batch reactor and a membrane reactor. Experimental results are reported. Next, a mixed Ce-Co oxide film was supported on an γ-alumina membrane used in a catalytic membrane reactor to compare formaldehyde removal between both types of systems. Catalytic materials with cerium and with a relatively large amount of cerium favored the transformation of formaldehyde. Cerium was present as cerianite in the catalytic materials, as indicated by X-ray diffraction patterns.


Assuntos
Cério/química , Formaldeído/química , Eliminação de Resíduos Líquidos/métodos , Poluentes Químicos da Água/química , Biodegradação Ambiental , Catálise , Formaldeído/toxicidade , Membranas Artificiais , Oxirredução/efeitos dos fármacos , Água/química , Poluentes Químicos da Água/toxicidade
5.
Langmuir ; 31(32): 8818-23, 2015 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-26208255

RESUMO

Surface heterogeneity affects the behavior of nanoparticles at liquid interfaces. To gain a deeper understanding on the details of these phenomena, we have measured the interfacial activity and contact angle at water/decane interfaces for three different types of nanoparticles: homogeneous poly(methyl methacrylate) (PMMA), silica functionalized with a capping ligand containing a methacrylate terminal group, and Ag-based Janus colloids with two capping ligands of different hydrophobicity. The interfacial activity was analyzed by pendant drop tensiometry, and the contact angle was measured directly by freeze-fracture shadow-casting cryo-scanning electron microscopy. The silver Janus nanoparticles presented the highest interfacial activity, compared to the silica nanoparticles and the homogeneous PMMA nanoparticles. Additionally, increasing the bulk concentration of the PMMA and silica nanoparticles up to 100-fold compared to the Janus nanoparticles led to silica particles forming fractal-like structures at the interface, contrary to the PMMA particles that did not show any spontaneous adsorption.


Assuntos
Alcanos/química , Nanopartículas Metálicas/química , Polimetil Metacrilato/química , Prata/química , Água/química , Ligantes , Tamanho da Partícula , Propriedades de Superfície
6.
Plant Biotechnol J ; 12(7): 914-24, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24751162

RESUMO

Switchgrass (Panicum virgatum L.) is a leading candidate for a dedicated lignocellulosic biofuel feedstock owing to its high biomass production, wide adaptation and low agronomic input requirements. Lignin in cell walls of switchgrass, and other lignocellulosic feedstocks, severely limits the accessibility of cell wall carbohydrates to enzymatic breakdown into fermentable sugars and subsequently biofuels. Low-lignin transgenic switchgrass plants produced by the down-regulation of caffeic acid O-methyltransferase (COMT), a lignin biosynthetic enzyme, were analysed in the field for two growing seasons. COMT transcript abundance, lignin content and the syringyl/guaiacyl lignin monomer ratio were consistently lower in the COMT-down-regulated plants throughout the duration of the field trial. In general, analyses with fully established plants harvested during the second growing season produced results that were similar to those observed in previous greenhouse studies with these plants. Sugar release was improved by up to 34% and ethanol yield by up to 28% in the transgenic lines relative to controls. Additionally, these results were obtained using senesced plant material harvested at the end of the growing season, compared with the young, green tissue that was used in the greenhouse experiments. Another important finding was that transgenic plants were not more susceptible to rust (Puccinia emaculata). The results of this study suggest that lignin down-regulation in switchgrass can confer real-world improvements in biofuel yield without negative consequences to biomass yield or disease susceptibility.


Assuntos
Biocombustíveis , Lignina/biossíntese , Panicum/genética , Biomassa , Parede Celular/química , Celulose/química , Resistência à Doença/genética , Regulação para Baixo , Etanol/química , Regulação da Expressão Gênica de Plantas , Lignina/genética , Metiltransferases/genética , Metiltransferases/metabolismo , Panicum/crescimento & desenvolvimento , Panicum/microbiologia , Plantas Geneticamente Modificadas/metabolismo , RNA Mensageiro/metabolismo
7.
BMC Microbiol ; 14: 215, 2014 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-25128475

RESUMO

BACKGROUND: The thermophilic, anaerobic bacterium, Clostridium thermocellum is a model organism for consolidated processing due to its efficient fermentation of cellulose. Constituents of dilute acid pretreatment hydrolysate are known to inhibit C. thermocellum and other microorganisms. To evaluate the biological impact of this type of hydrolysate, a transcriptomic analysis of growth in hydrolysate-containing medium was conducted on 17.5% v/v Populus hydrolysate-tolerant mutant (PM) and wild type (WT) strains of C. thermocellum. RESULTS: In two levels of Populus hydrolysate medium (0% and 10% v/v), the PM showed both gene specific increases and decreases of gene expression compared to the wild-type strain. The PM had increased expression of genes in energy production and conversion, and amino acid transport and metabolism in both standard and 10% v/v Populus hydrolysate media. In particular, expression of the histidine metabolism increased up to 100 fold. In contrast, the PM decreased gene expression in cell division and sporulation (standard medium only), cell defense mechanisms, cell envelope, cell motility, and cellulosome in both media. The PM downregulated inorganic ion transport and metabolism in standard medium but upregulated it in the hydrolysate media when compared to the WT. The WT differentially expressed 1072 genes in response to the hydrolysate medium which included increased transcription of cell defense mechanisms, cell motility, and cellulosome, and decreased expression in cell envelope, amino acid transport and metabolism, inorganic ion transport and metabolism, and lipid metabolism, while the PM only differentially expressed 92 genes. The PM tolerates up to 17.5% v/v Populus hydrolysate and growth in it elicited 489 genes with differential expression, which included increased expression in energy production and conversion, cellulosome production, and inorganic ion transport and metabolism and decreased expression in transcription and cell defense mechanisms. CONCLUSION: These results suggest the mechanisms of tolerance for the Populus hydrolysate-tolerant mutant strain of C. thermocellum are based on increased cellular efficiency caused apparently by downregulation of non-critical genes and increasing the expression of genes in energy production and conversion rather than tolerance to specific hydrolysate components. The wild type, conversely, responds to hydrolysate media by down-regulating growth genes and up-regulating stress response genes.


Assuntos
Antibacterianos/farmacologia , Clostridium thermocellum/efeitos dos fármacos , Clostridium thermocellum/genética , Tolerância a Medicamentos , Perfilação da Expressão Gênica , Extratos Vegetais/farmacologia , Populus/química , Antibacterianos/isolamento & purificação , Celulose/química , Clostridium thermocellum/crescimento & desenvolvimento , Meios de Cultura/química , Hidrólise , Redes e Vias Metabólicas/genética , Extratos Vegetais/isolamento & purificação
8.
Proc Natl Acad Sci U S A ; 108(9): 3803-8, 2011 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-21321194

RESUMO

Switchgrass is a leading dedicated bioenergy feedstock in the United States because it is a native, high-yielding, perennial prairie grass with a broad cultivation range and low agronomic input requirements. Biomass conversion research has developed processes for production of ethanol and other biofuels, but they remain costly primarily because of the intrinsic recalcitrance of biomass. We show here that genetic modification of switchgrass can produce phenotypically normal plants that have reduced thermal-chemical (≤180 °C), enzymatic, and microbial recalcitrance. Down-regulation of the switchgrass caffeic acid O-methyltransferase gene decreases lignin content modestly, reduces the syringyl:guaiacyl lignin monomer ratio, improves forage quality, and, most importantly, increases the ethanol yield by up to 38% using conventional biomass fermentation processes. The down-regulated lines require less severe pretreatment and 300-400% lower cellulase dosages for equivalent product yields using simultaneous saccharification and fermentation with yeast. Furthermore, fermentation of diluted acid-pretreated transgenic switchgrass using Clostridium thermocellum with no added enzymes showed better product yields than obtained with unmodified switchgrass. Therefore, this apparent reduction in the recalcitrance of transgenic switchgrass has the potential to lower processing costs for biomass fermentation-derived fuels and chemicals significantly. Alternatively, such modified transgenic switchgrass lines should yield significantly more fermentation chemicals per hectare under identical process conditions.


Assuntos
Biocombustíveis/análise , Etanol/metabolismo , Técnicas Genéticas , Lignina/genética , Metiltransferases/genética , Panicum/genética , Panicum/metabolismo , Celulase/metabolismo , Regulação para Baixo/genética , Fermentação , Hidrólise , Dados de Sequência Molecular , Panicum/enzimologia , Panicum/crescimento & desenvolvimento , Fenótipo , Plantas Geneticamente Modificadas
9.
PLoS One ; 19(4): e0301604, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38635649

RESUMO

The red abalone (Haliotis rufescens) represents North America's most important aquaculture species. Its hepatopancreas is rich in cellulases and other polysaccharide-degrading enzymes, which provide it the remarkable ability to digest cellulose-rich macroalgae; nevertheless, its cellulolytic systems are poorly explored. This manuscript describes some functional and structural properties of an endogenous trimeric glycosylated endoglucanase from H. rufescens. The purified enzyme showed a molecular mass of 23.4 kDa determined by MALDI-TOF mass spectrometry, which behaved as a homotrimer in gel filtration chromatography and zymograms. According to the periodic acid-Schiff reagent staining, detecting sugar moieties in SDS-PAGE gel confirmed that abalone cellulase is a glycoprotein. Hydrolysis of cello-oligosaccharides and p-nitrophenyl-ß-D-glucopyranosides confirmed its endo/exoactivity. A maximum enzyme activity toward 0.5% (w/v) carboxymethylcellulose of 53.9 ± 1.0 U/mg was achieved at 45°C and pH 6.0. We elucidated the abalone cellulase primary structure using proteases and mass spectrometry methods. Based on these results and using a bioinformatic approach, we identified the gene encoding this enzyme and deduced its full-length amino acid sequence; the mature protein comprised 177 residues with a calculated molecular mass of 19.1 kDa and, according to sequence similarity, it was classified into the glycosyl-hydrolase family 45 subfamily B. An AlphaFold theoretical model and docking simulations with cellopentaose confirmed that abalone cellulase is a ß-sheet rich protein, as also observed by circular dichroism experiments, with conserved catalytic residues: Asp26, Asn109, and Asp134. Interestingly, the AlphaFold-Multimer analysis indicated a trimeric assembly for abalone cellulase, which supported our experimental findings. The discovery and characterization of these enzymes may contribute to developing efficient cellulose bioconversion processes for biofuels and sustainable bioproducts.


Assuntos
Celulase , Gastrópodes , Animais , Celulase/metabolismo , Gastrópodes/genética , Sequência de Aminoácidos , Celulose/metabolismo , Polissacarídeos
10.
Eur J Dent ; 2024 May 22.
Artigo em Inglês | MEDLINE | ID: mdl-38776981

RESUMO

OBJECTIVE: The focus of this triple-blind randomized study was to evaluate the biocompatibility of a new root canal filling sealer (RCFS) based on tristrontium aluminate and dodecacalcium hepta-aluminate in living tissue. MATERIAL AND METHODS: Forty-five Wistar rats (Rattus norvegicus) were divided into three groups: control (polyethylene), sealer (Bio-C Sealer, Londrina, PR, Brazil), and experimental (tristrontium aluminate and dodecacalcium hepta-aluminate). The tissues were analyzed under an optical microscope to assess different cellular events at different time intervals (7, 15, and 30 days). STATISTICAL ANALYSIS: Data were analyzed using the Kruskal-Wallis and Dunn (p < 0.05) tests. RESULTS: In the initial period, a moderate inflammatory infiltrate was observed, similar between the endodontic cements groups (p = 0.725). The intensity of the infiltrate decreased with time, with no significant difference among the groups (p > 0.05). The number of young fibroblasts was elevated in all groups evaluated at 7 days. The experimental group showed the highest number of cells at all time intervals, but the difference with the sealer group at 7 (p = 0.001) and 15 days (p = 0.002) and the control group at 30 days was not significant (p = 0.001). Regarding tissue repair events, the amount of collagen fibers increased over the experimental intervals, with no significant difference between the sealer and control groups (p > 0.05). CONCLUSION: The experimental RCFS based on calcium and strontium aluminates proved to be biocompatible for use in close contact with periapical tissue, inducing a low inflammatory reaction and favoring rapid tissue repair.

11.
Anal Chem ; 85(6): 3144-51, 2013 Mar 19.
Artigo em Inglês | MEDLINE | ID: mdl-23406086

RESUMO

Post-translational modifications (PTMs) are known to play a significant role in many biological functions. The focus of this study is to optimize an integrated experimental/informatics approach to more confidently characterize the range of post-translational modifications of the cellulosome protein complex used by the bacterium Clostridium thermocellum to better understand how this protein machine is tuned for enzymatic cellulose solubilization. To enhance comprehensive characterization, the extracellular cellulosome proteins were analyzed using multiple proteolytic digests (trypsin, Lys-C, Glu-C) and multiple fragmentation techniques (collisionally activated dissociation, electron transfer dissociation, decision tree). As expected, peptide and protein identifications were increased by utilizing alternate proteases and fragmentation methods, in addition to the increase in protein sequence coverage. The complementarity of these experiments also allowed for a global exploration of PTMs associated with the cellulosome based upon a set of defined PTMs that included methylation, oxidation, acetylation, phosphorylation, and signal peptide cleavage. In these experiments, 85 modified peptides corresponding to 28 cellulosome proteins were identified. Many of these modifications were located in active cellulolytic or structural domains of the cellulosome proteins, suggesting a level of possible regulatory control of protein function in various cellulotyic conditions. The use of complementary proteolytic digestion/peptide fragmentation processes allowed for independent verification of PTMs in different experiments, thus leading to increased confidence in PTM identifications.


Assuntos
Celulose/metabolismo , Clostridium thermocellum/metabolismo , Líquido Extracelular/metabolismo , Fragmentos de Peptídeos/metabolismo , Processamento de Proteína Pós-Traducional/fisiologia , Proteólise , Sequência de Aminoácidos , Celulose/química , Celulose/genética , Clostridium thermocellum/química , Clostridium thermocellum/genética , Líquido Extracelular/química , Dados de Sequência Molecular , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética
12.
NPJ Prim Care Respir Med ; 32(1): 59, 2022 12 27.
Artigo em Inglês | MEDLINE | ID: mdl-36575175

RESUMO

Over 1400 patients using dry powder inhalers (DPIs) to deliver COPD maintenance therapies were recruited across Europe and Australia. Their peak inspiratory flow (PIF) was measured, inhaler technique was observed, and adherence to treatment assessed. From relating the findings with patient health status, and thereby identifying critical errors, key clinical recommendations for primary care clinicians were determined, namely - measure PIF before prescribing a DPI to ensure inhalation manoeuvre ability is well-matched with the device. Some patients could benefit from inhalation training whereas others should have their DPI changed for one better suited to their inspiratory ability or alternatively be prescribed an active device (such as a soft mist inhaler or pressurized metered dose inhaler). Observing the inhalation technique was valuable however this misses suboptimal PIF (approaching one fourth of patients with a satisfactory observed manoeuvre had a suboptimal PIF for their DPI). Assess adherence as deliberate non-adherence can point to a mismatch between a patient and their inhaler (deliberate non-adherence was significantly associated with PIFs below the minimum for the DPI). In-person observation of inhalation technique was found to be inferior to video rating based on device-specific checklists. Where video assessments are not possible, observation training for healthcare professionals would therefore be valuable particularly to improve the ability to identify the critical errors associated with health status namely 'teeth and lips sealed around mouthpiece', 'breathe in' and 'breathing out calmly after inhalation'. However, it is recommended that observation alone should not replace PIF measurement in the DPI selection process.Trial registration: https://clinicaltrials.gov/ct2/show/NCT04532853 .


Assuntos
Inaladores de Pó Seco , Doença Pulmonar Obstrutiva Crônica , Humanos , Administração por Inalação , Inaladores Dosimetrados , Doença Pulmonar Obstrutiva Crônica/tratamento farmacológico , Atenção Primária à Saúde
13.
NPJ Prim Care Respir Med ; 32(1): 18, 2022 05 26.
Artigo em Inglês | MEDLINE | ID: mdl-35618739

RESUMO

The study aimed to determine the associations of Peak Inspiratory Flow (PIF), inhalation technique and adherence with health status and exacerbations in participants with COPD using DPI maintenance therapy. This cross-sectional multi-country observational real-world study included COPD participants aged ≥40 years using a DPI for maintenance therapy. PIF was measured three times with the In-Check DIAL G16: (1) typical PIF at resistance of participant's inhaler, (2) maximal PIF at resistance of participant's inhaler, (3) maximal PIF at low resistance. Suboptimal PIF (sPIF) was defined as PIF lower than required for the device. Participants completed questionnaires on health status (Clinical COPD Questionnaire (CCQ)), adherence (Test of Adherence to Inhalers (TAI)) and exacerbations. Inhalation technique was assessed by standardised evaluation of video recordings. Complete data were available from 1434 participants (50.1% female, mean age 69.2 years). GOLD stage was available for 801 participants: GOLD stage I (23.6%), II (54.9%), III (17.4%) and IV (4.1%)). Of all participants, 29% had a sPIF, and 16% were shown able to generate an optimal PIF but failed to do so. sPIF was significantly associated with worse health status (0.226 (95% CI 0.107-0.346), worse units on CCQ; p = 0.001). The errors 'teeth and lips sealed around mouthpiece', 'breathe in', and 'breathe out calmly after inhalation' were related to health status. Adherence was not associated with health status. After correcting for multiple testing, no significant association was found with moderate or severe exacerbations in the last 12 months. To conclude, sPIF is associated with poorer health status. This study demonstrates the importance of PIF assessment in DPI inhalation therapy. Healthcare professionals should consider selecting appropriate inhalers in cases of sPIF.


Assuntos
Asma , Doença Pulmonar Obstrutiva Crônica , Idoso , Asma/tratamento farmacológico , Estudos Transversais , Inaladores de Pó Seco , Feminino , Nível de Saúde , Humanos , Masculino , Doença Pulmonar Obstrutiva Crônica/tratamento farmacológico
14.
Appl Environ Microbiol ; 77(12): 4042-54, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21498747

RESUMO

The extremely thermophilic, Gram-positive bacteria Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis efficiently degrade both cellulose and hemicellulose, which makes them relevant models for lignocellulosic biomass deconstruction to produce sustainable biofuels. To identify the shared and unique features of secreted cellulolytic apparatuses from C. bescii and C. obsidiansis, label-free quantitative proteomics was used to analyze protein abundance over the course of fermentative growth on crystalline cellulose. Both organisms' secretomes consisted of more than 400 proteins, of which the most abundant were multidomain glycosidases, extracellular solute-binding proteins, flagellin, putative pectate lyases, and uncharacterized proteins with predicted secretion signals. Among the identified proteins, 53 to 57 significantly changed in abundance during cellulose fermentation in favor of glycosidases and extracellular binding proteins. Mass spectrometric characterizations, together with cellulase activity measurements, revealed a substantial abundance increase of a few bifunctional multidomain glycosidases composed of glycosidase (GH) domain family 5, 9, 10, 44, or 48 and family 3 carbohydrate binding (CBM3) modules. In addition to their orthologous cellulases, the organisms expressed unique glycosidases with different domain organizations: C. obsidiansis expressed the COB47_1671 protein with GH10/5 domains, while C. bescii expressed the Athe_1857 (GH10/48) and Athe_1859 (GH5/44) proteins. Glycosidases containing CBM3 domains were selectively enriched via binding to amorphous cellulose. Preparations from both bacteria contained highly thermostable enzymes with optimal cellulase activities at 85°C and pH 5. The C. obsidiansis preparation, however, had higher cellulase specific activity and greater thermostability. The C. bescii culture produced more extracellular protein and additional SDS-PAGE bands that demonstrated glycosidase activity.


Assuntos
Celulases/análise , Celulases/metabolismo , Bactérias Gram-Positivas/enzimologia , Proteômica/métodos , Celulose/metabolismo , Eletroforese em Gel de Poliacrilamida , Fermentação , Perfilação da Expressão Gênica , Bactérias Gram-Positivas/crescimento & desenvolvimento , Espectrometria de Massas
15.
BMC Microbiol ; 11: 134, 2011 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-21672225

RESUMO

BACKGROUND: The ability of Clostridium thermocellum ATCC 27405 wild-type strain to hydrolyze cellulose and ferment the degradation products directly to ethanol and other metabolic byproducts makes it an attractive candidate for consolidated bioprocessing of cellulosic biomass to biofuels. In this study, whole-genome microarrays were used to investigate the expression of C. thermocellum mRNA during growth on crystalline cellulose in controlled replicate batch fermentations. RESULTS: A time-series analysis of gene expression revealed changes in transcript levels of ~40% of genes (~1300 out of 3198 ORFs encoded in the genome) during transition from early-exponential to late-stationary phase. K-means clustering of genes with statistically significant changes in transcript levels identified six distinct clusters of temporal expression. Broadly, genes involved in energy production, translation, glycolysis and amino acid, nucleotide and coenzyme metabolism displayed a decreasing trend in gene expression as cells entered stationary phase. In comparison, genes involved in cell structure and motility, chemotaxis, signal transduction and transcription showed an increasing trend in gene expression. Hierarchical clustering of cellulosome-related genes highlighted temporal changes in composition of this multi-enzyme complex during batch growth on crystalline cellulose, with increased expression of several genes encoding hydrolytic enzymes involved in degradation of non-cellulosic substrates in stationary phase. CONCLUSIONS: Overall, the results suggest that under low substrate availability, growth slows due to decreased metabolic potential and C. thermocellum alters its gene expression to (i) modulate the composition of cellulosomes that are released into the environment with an increased proportion of enzymes than can efficiently degrade plant polysaccharides other than cellulose, (ii) enhance signal transduction and chemotaxis mechanisms perhaps to sense the oligosaccharide hydrolysis products, and nutrient gradients generated through the action of cell-free cellulosomes and, (iii) increase cellular motility for potentially orienting the cells' movement towards positive environmental signals leading to nutrient sources. Such a coordinated cellular strategy would increase its chances of survival in natural ecosystems where feast and famine conditions are frequently encountered.


Assuntos
Celulose/metabolismo , Clostridium thermocellum/genética , Clostridium thermocellum/metabolismo , Perfilação da Expressão Gênica , Celulossomas/metabolismo , Clostridium thermocellum/crescimento & desenvolvimento , Fermentação , Regulação Bacteriana da Expressão Gênica , Fatores de Tempo
16.
Biomed Phys Eng Express ; 7(5)2021 08 06.
Artigo em Inglês | MEDLINE | ID: mdl-34320475

RESUMO

In order to provide favorable conditions for bone regeneration, a lot of biomaterials have been developed and evaluated, worldwide. Composite biomaterials have gained notoriety, as they combine desirable properties of each isolated material. Thus, in this research, bone repair capacity of three developed formulations of ceramic scaffolds were evaluated histomorphometrically, after implantation. Scaffolds were based on wollastonite (W) andß-tricalcium phosphate (ß-TCP) composites in three different ratios (wt.%). ThirtyWistarrats were randomly assigned to three experimental groups: W-20 (20 W/80ß-TCP wt.%), W-60 (60 W/40ß-TCP wt.%), and W-80 (80 W/20ß-TCP wt.%), evaluated by optical microscopy at biological tests after 15 and 45 days of implantation. Throughout the study, the histological results evidenced that the scaffolds remained at the implantation site, were biocompatible and presented osteogenic potential. The percentage of neoformed mineralized tissue was more evident in the W-20 group (51%), at 45 days. The composite of the W-80 group showed more evident biodegradation than the biomaterials of the W-20 and W-60 groups. Thus, it is concluded that the scaffold containing 20 W/80ß-TCP (wt.%) promoted more evident bone formation, but all composites evaluated in this study showed notorious bioactivity and promising characteristics for clinical application.


Assuntos
Regeneração Óssea , Crânio , Alicerces Teciduais , Animais , Materiais Biocompatíveis , Compostos de Cálcio , Fosfatos de Cálcio , Ratos , Silicatos , Crânio/diagnóstico por imagem
17.
Mater Sci Eng C Mater Biol Appl ; 116: 111223, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-32806242

RESUMO

The scaffolds, which morphologically and physiologically mimic natural features of the bone, are of high demand for regenerative medicine. To address this challenge, we have developed innovative bioactive porous silicon- wollastonite substrates for bone tissue engineering. Additive manufacturing through selective laser melting approach has been exploited to fabricate scaffolds of different architecture. Unique material combining osteoinductivity, osteoconductivity and bioactive elements allows flexibility in design. As the porous structure is required for the ingrowth of the bone tissue, the CAD designed scaffolds with pore size of 400 µm and hierarchical gradient of pore size from 50 µm to 350 µm have been 3D printed and tested in vitro. The scaffolds have demonstrated not only the enhanced viability and differential patterning of human mesenchymal cells (hMSC) guided by the biomimetic design onto extra and intra scaffold space but also promoted the osteogenic differentiation in vitro. Both homogeneous and gradient scaffolds have shown the differential expression of primary transcription factors (RUNX2, OSX), anti-inflammatory factors and cytokines, which are important for the regulation of ossification. The effective elastic modulus and compressive strength of scaffolds have been calculated as 1.1 ± 0.9 GPa and 37 ± 13.5 MPa with progressive failure for homogeneous structured scaffold; and 1.8 ± 0.9 GPa and 71 ± 9.5 MPa for gradient-structured scaffold with saw-tooth fracture mode and sudden incognito failure zones. The finite element analysis reveals more bulk stress onto the gradient scaffolds when compared to the homogeneous counterpart. The findings demonstrate that as-produced composite ceramic scaffolds can pave the way for treating specific orthopaedic defects by tailoring the design through additive manufacturing.


Assuntos
Osteogênese , Engenharia Tecidual , Osso e Ossos , Compostos de Cálcio , Humanos , Lasers , Porosidade , Silicatos , Silício , Alicerces Teciduais
18.
J Biomed Mater Res B Appl Biomater ; 108(3): 1107-1116, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31393675

RESUMO

Scaffolds are models designed to aid the interaction between cells and extracellular bone matrix, providing structural support for newly formed bone tissue. In this work, wollastonite with ß-TCP porous ceramic scaffolds was developed by the polymer sponge replication. Their microstructure, cell viability and bioactivity were tested. in vivo was performed to evaluate the use of a calcium silicate-based implant in the repair of rabbit tibias. Holes were made in the both proximal and distal tibial metaphysis of each animal and filled with calcium silicate-based implant, and in the left tibia, no implant were used, serving as control group. Animals underwent euthanasia after 30 and 60 days of study. The animals were submitted to clinical-radiographic evaluations and their histology was analyzed by optical and scanning electron microscope. The studied calcium silicate implant provided biocompatibility and promoted bone formation, stimulating the process of bone repair in rabbits, features observed by gradual radiopacity shown in the radiographic evaluations.


Assuntos
Compostos de Cálcio/química , Fosfatos de Cálcio/química , Silicatos/química , Tíbia/patologia , Animais , Materiais Biocompatíveis/química , Regeneração Óssea , Substitutos Ósseos/química , Cerâmica , Feminino , Masculino , Teste de Materiais , Microscopia Eletrônica de Varredura , Tamanho da Partícula , Polímeros/química , Pós , Coelhos , Engenharia Tecidual , Alicerces Teciduais/química , Difração de Raios X
19.
J Phys Chem Lett ; 11(15): 6249-6255, 2020 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-32643938

RESUMO

The poor photochemical stability of R-phycoerythrin (R-PE) has been a bottleneck for its broad-spectrum applications. Inspired by nature, we studied a sustainable strategy of protein cohabitation to enhance R-PE stability by embedding it in a solid matrix of gelatin. Both pure R-PE and fresh phycobiliprotein (PBP) extracts recovered from Gracilaria gracilis were studied. The incorporation of R-PE in the gelatin-based films (gelatin-RPE and gelatin-PBPs) has improved its photochemical stability for at least 8 months, the longest time period reported so far. These results were evidenced by not only absorption but also emission quantum yield measurements (Φ). Moreover, the photostability of gelatin-RPE films upon continuous excitation with an AM1.5G solar simulator was tested and found to remain stable for 23 h after initial decreasing up to 250 min. In the end, another approach was established to allow 100% photostability for a 3 h exposure to an AM1.5G solar simulator by doping the gelatin-based film including R-Phycoerythrin with n-propyl gallate stabilized with Tween 80, allowing their use as naturally based optically active centers in photovoltaic applications.


Assuntos
Gracilaria/química , Ficoeritrina/química , Extratos Vegetais/química , Transferência Ressonante de Energia de Fluorescência , Corantes Fluorescentes/química , Gelatina/química , Cinética , Processos Fotoquímicos , Fotossíntese , Polissorbatos/química , Galato de Propila/química , Estabilidade Proteica/efeitos da radiação , Oxigênio Singlete/química , Espectrometria de Fluorescência , Temperatura , Fatores de Tempo
20.
J Chromatogr A ; 1208(1-2): 189-96, 2008 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-18790485

RESUMO

We present a novel procedure for affinity partitioning of recombinant proteins fused to the choline-binding module C-LytA in aqueous two-phase systems containing poly(ethylene glycol) (PEG). Proteins tagged with the C-LytA module and exposed to the two-phase systems are quantitatively localized in the PEG-rich phase, whereas subsequent addition of the natural ligand choline specifically shifts their localization to the PEG-poor phase by displacement of the polymer from the binding sites. The described procedure is simple, scalable and reproducible, and has been successfully applied to the purification of four diverse proteins, resulting in high yields and purity.


Assuntos
Cromatografia de Afinidade/métodos , Proteínas Recombinantes de Fusão/isolamento & purificação , Colina/química , Polietilenoglicóis/química
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