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1.
Nature ; 599(7885): 497-502, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34759315

RESUMO

Canonical CRISPR-Cas systems provide adaptive immunity against mobile genetic elements1. However, type I-F, I-B and V-K systems have been adopted by Tn7-like transposons to direct RNA-guided transposon insertion2-7. Type V-K CRISPR-associated transposons rely on the pseudonuclease Cas12k, the transposase TnsB, the AAA+ ATPase TnsC and the zinc-finger protein TniQ7, but the molecular mechanism of RNA-directed DNA transposition has remained elusive. Here we report cryo-electron microscopic structures of a Cas12k-guide RNA-target DNA complex and a DNA-bound, polymeric TnsC filament from the CRISPR-associated transposon system of the photosynthetic cyanobacterium Scytonema hofmanni. The Cas12k complex structure reveals an intricate guide RNA architecture and critical interactions mediating RNA-guided target DNA recognition. TnsC helical filament assembly is ATP-dependent and accompanied by structural remodelling of the bound DNA duplex. In vivo transposition assays corroborate key features of the structures, and biochemical experiments show that TniQ restricts TnsC polymerization, while TnsB interacts directly with TnsC filaments to trigger their disassembly upon ATP hydrolysis. Together, these results suggest that RNA-directed target selection by Cas12k primes TnsC polymerization and DNA remodelling, generating a recruitment platform for TnsB to catalyse site-specific transposon insertion. Insights from this work will inform the development of CRISPR-associated transposons as programmable site-specific gene insertion tools.


Assuntos
Sistemas CRISPR-Cas , Cianobactérias , Elementos de DNA Transponíveis/genética , Edição de Genes/métodos , Adenosina Trifosfatases/metabolismo , Adenosina Trifosfatases/ultraestrutura , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/ultraestrutura , Biopolímeros , Proteínas Associadas a CRISPR/metabolismo , Sistemas CRISPR-Cas/genética , Microscopia Crioeletrônica , Cianobactérias/enzimologia , Cianobactérias/genética , DNA Bacteriano/genética , DNA Bacteriano/metabolismo , DNA Bacteriano/ultraestrutura , Modelos Moleculares , Mutagênese Insercional , Polimerização , RNA/genética , RNA/metabolismo , Especificidade por Substrato , Transposases/metabolismo , Transposases/ultraestrutura , Dedos de Zinco
2.
Funct Integr Genomics ; 24(2): 46, 2024 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-38429576

RESUMO

Cyanobacteria are oxygenic photosynthetic organisms which are found across many ecosystems, including freshwater and marine habitats. They are also found on natural and artificial surfaces. In this study, we cultured and characterise a novel cyanobacterium from the surfaces of foam microplastics of tropical coastal waters. We study the chemical ecology of this cyanobacterium, Sphaerothrix gracilis gen. et sp. nov., together with its potential to form harmful cyanobacterial blooms and bioremediation applications to combat plastic pollution. The genome of S. gracilis spanned 6.7 Mbp, with identification of antibiotic resistance, nitrogen-fixation, plastic-degrading and genes involved in harmful metabolite production. The transport of potentially harmful S. gracilis in coastal environments could have severe implications on human health and food security, especially in times of a cyanobacterial bloom.


Assuntos
Cianobactérias , Ecossistema , Humanos , Microplásticos/metabolismo , Plásticos/metabolismo , Cianobactérias/genética , Cianobactérias/metabolismo , Fixação de Nitrogênio
3.
Bioprocess Biosyst Eng ; 46(2): 297-306, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36571607

RESUMO

Poly-hydroxy-butyrate (PHB) bioplastic resin can be made directly from atmospheric CO2 using cyanobacteria. However, higher PHB productivities are required before large-scale production is economically viable. Random mutagenesis offers a way to create new production strains with increased PHB yields and increased biomass densities without complex technical manipulation associated with genetically modified organisms. This study used staining with lipid fluorescent dye (BODIPY 493/593) and fluorescence-activated cell sorting (FACS) to select high lipid content mutants and followed this with a well plate growth screen. Thirteen mutants were selected for flask cultivation and two strains produced significantly higher PHB yields (29% and 26% higher than wild type), biomass accumulation (36% and 33% higher than wild type) and volumetric PHB density (75% and 67% higher than wild type). The maximum PHB yielding strain (% dcw) was 12.0%, which was 43% higher than the wild type (8.3% in this study). The highest volumetric PHB density was 18.8 mg PHB/L compared to 10.7 mg PHB/L by the wild type. To develop cyanobacterial strain with higher PHB productivities, the combination of random chemical mutagenesis and FACS holds great potential to promote cyanobacteria bioplastic production becoming economically viable.


Assuntos
Cianobactérias , Poliésteres , Citometria de Fluxo , Poliésteres/metabolismo , Hidroxibutiratos/metabolismo , Cianobactérias/genética , Cianobactérias/metabolismo , Mutagênese
4.
Int J Mol Sci ; 21(19)2020 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-33003478

RESUMO

Cyanobacteria are photoautotrophic bacteria commonly found in the natural environment. Due to the ecological benefits associated with the assimilation of carbon dioxide from the atmosphere and utilization of light energy, they are attractive hosts in a growing number of biotechnological processes. Biopolymer production is arguably one of the most critical areas where the transition from fossil-derived chemistry to renewable chemistry is needed. Cyanobacteria can produce several polymeric compounds with high applicability such as glycogen, polyhydroxyalkanoates, or extracellular polymeric substances. These important biopolymers are synthesized using precursors derived from central carbon metabolism, including the tricarboxylic acid cycle. Due to their unique metabolic properties, i.e., light harvesting and carbon fixation, the molecular and genetic aspects of polymer biosynthesis and their relationship with central carbon metabolism are somehow different from those found in heterotrophic microorganisms. A greater understanding of the processes involved in cyanobacterial metabolism is still required to produce these molecules more efficiently. This review presents the current state of the art in the engineering of cyanobacterial metabolism for the efficient production of these biopolymers.


Assuntos
Biopolímeros/biossíntese , Biotecnologia , Cianobactérias/metabolismo , Fotossíntese/genética , Biopolímeros/genética , Biopolímeros/metabolismo , Dióxido de Carbono/metabolismo , Cianobactérias/genética , Glicogênio/metabolismo , Poli-Hidroxialcanoatos/genética , Poli-Hidroxialcanoatos/metabolismo
5.
Adv Exp Med Biol ; 1080: 215-238, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30091097

RESUMO

Hydroxy acids have attracted attention as building block chemicals due to their roles as precursors for the production of various pharmaceuticals, vitamins, antibiotics, and flavor compounds as well as monomers for biodegradable plastic polyesters. The current approach to hydroxy acid production relies on nonrenewable fossil resources such as petroleum for raw materials, raising issues such as the rising costs of starting materials and environmental incompatibility. Recently, synthetic biology approaches based on the rational design and reconstruction of new biological systems were implemented to produce chemicals from a variety of renewable substrates. In addition to research using heterotrophic organic carbon-dependent Escherichia coli or yeasts, photosynthetic microorganisms such as cyanobacteria possessing the ability to absorb solar radiation and fix carbon dioxide (CO2) as a sole carbon source have been engineered into a new type of microbial cell factory to directly produce hydroxy acids from CO2. In this chapter, recent progress regarding the direct photosynthetic production of three important hydroxy acids-3-hydroxypropionate (3-HP), 3-hydroxybutyrate (3-HB), and 3-hydroxyvalerate (3-HV)-from CO2 in cyanobacteria is summarized and discussed.


Assuntos
Plásticos Biodegradáveis/metabolismo , Cianobactérias , Engenharia Metabólica/métodos , Fotossíntese , Poliésteres/metabolismo , Cianobactérias/genética , Cianobactérias/metabolismo
6.
Environ Sci Technol ; 50(2): 604-15, 2016 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-26654276

RESUMO

Although toxic cyanobacterial blooms in western Lake Erie threaten drinking water supplies and are promoted by nutrient loading, the precise nutrient regime that selects specific cyanobacteria populations is poorly understood. Here, we assess shifts in cyanobacterial abundances and global gene-expression patterns in response to natural and manipulated gradients in nitrogen and phosphorus to identify gene pathways that facilitate dominance by different cyanobacteria. Gradients in soluble reactive phosphorus shaped cyanobacterial communities and elicited the largest transcriptomic responses. Under high-P conditions (closest to the mouth of the Maumee River), Anabaena and Planktothrix were the dominant cyanobacterial populations, and experimental P and ammonium enrichment promoted nitrogen fixation gene (nifH) expression in Anabaena. For Microcystis, experimental additions of P up-regulated genes involved in phage defense, genomic rearrangement, and nitrogen acquisition but led to lower abundances. Within offshore, low-P regions of the western basin of Lake Erie, Microcystis up-regulated genes associated with P scavenging (pstSCAB, phoX) and dominated cyanobacterial communities. Experimental additions of ammonium and urea did not alter Microcystis abundances but did up-regulate protease inhibitors (aer and mcn gene sets) and microcystin synthetase genes (mcy), with urea enrichment yielding significant increases in microcystin concentrations. Our findings suggest that management plans that reduce P loads alone may not significantly reduce the risk of cyanobacterial blooms in western Lake Erie but rather may promote a shift among cyanobacterial populations (Microcystis, Anabaena, and Planktothrix) toward a greater dominance by toxic strains of Microcystis.


Assuntos
Proteínas de Bactérias/genética , Cianobactérias/fisiologia , Ecossistema , Nitrogênio/metabolismo , Fósforo/metabolismo , Proteínas de Bactérias/metabolismo , Cianobactérias/genética , Lagos/microbiologia , Ohio , Análise de Sequência de DNA , Transcriptoma
7.
Environ Microbiol ; 17(2): 462-79, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24903534

RESUMO

During the 20th century, synthetic polymers were greatly used in the field of art. In particular, the epoxy resins were used for both conservation and for creating sculptures. The biodeterioration of these polymers has not been adequately studied. The aim of this investigation was to examine the microflora responsible for the deterioration of an epoxy statue exposed to outdoor conditions. Fungal and bacterial microflora were isolated from the art object, clustered by fluorescence-ITS (internal transcribed spacer), identified by ITS and 16S rRNA sequencing and tested for their lipolytic abilities by three agar assays. Different algal, bacterial, cyanobacterial and fungal clone libraries were constructed. The surrounding airborne microflora was analyzed using culture-dependent and culture-independent approaches. The results indicated the presence, on the statue surface, of an interesting and differentiate microbial community composed of rock-inhabiting members, algal photobionts (Trebouxia spp., Chloroidium ellipsoideum and Chlorella angustoellipsoidea), Cyanobacteria (Leptolyngbya sp., Phormidium sp., Cylindrospermum stagnale, Hassallia byssoidea and Geitlerinema sp.), black yeasts related to the species Friedmanniomyces endolithicus, Pseudotaeniolina globosa, Phaeococcomyces catenatus and Catenulostroma germanicum and several plant-associated fungi. This investigation provides new information on the potential microfloral inhabitants of epoxy resin discovering a new ecological niche, occupied mainly by several members of rock-colonizing microbial species.


Assuntos
Bactérias/genética , Plásticos Biodegradáveis/metabolismo , Cianobactérias/genética , Resinas Epóxi/metabolismo , Fungos/genética , Ágar , Bactérias/classificação , Biodegradação Ambiental , Biodiversidade , Cianobactérias/classificação , Fungos/classificação , Consórcios Microbianos/genética , RNA Ribossômico 16S/genética
8.
Metab Eng ; 32: 174-183, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26474789

RESUMO

Cyanobacteria are an important group of photoautotrophic bacteria that have been engineered and used to produce a wide range of biomaterials and biofuels, which are usually derived from important intermediates of the central metabolic pathways. In this study, the production of poly-3-hydroxybutyrate and poly-3-hydroxybutyrate-co-4-hydroxybutyrate in cyanobacteria was studied, and metabolic engineering strategies to improve the yields were also investigated. The genes involved in the biosynthetic pathway for poly-3-hydroxybutyrate from Chlorogloeopsis fritschii PCC 9212 were introduced into Synechococcus sp. PCC 7002, and the resulting strain was able to accumulate 2.77% of total cell dry weight as poly-3-hydroxybutyrate. When the ccmR gene was deleted in this strain, the yield of poly-3-hydroxybutyrate increased to 3.97% of total cell dry weight. A biosynthetic pathway for the production of 4-hydroxybutyryl-CoA was also constructed and introduced into the poly-3-hydroxybutyrate-producing strain. The resulting strain was able to produce ~4.5% of total cell dry weight as poly-3-hydroxybutyrate-co-4-hydroxybutyrate, in which 4-hydroxybutyrate accounted for ~12% of the co-polymer. These results demonstrate that poly-3-hydroxybutyrate-co-4-hydroxybutyrate can be produced in cyanobacteria and confirm that succinic semialdehyde is an important TCA cycle metabolite in cyanobacteria. This study also demonstrates the potential for future metabolic engineering in cyanobacteria that is based on recently discovered metabolites.


Assuntos
Hidroxibutiratos/metabolismo , Engenharia Metabólica/métodos , Poliésteres/metabolismo , Synechococcus/metabolismo , Cianobactérias/genética , Cianobactérias/metabolismo , Deleção de Genes , Redes e Vias Metabólicas/genética , Mutação , RNA Mensageiro/biossíntese , RNA Mensageiro/genética , Ácido gama-Aminobutírico/análogos & derivados , Ácido gama-Aminobutírico/metabolismo
9.
Harmful Algae ; 136: 102656, 2024 06.
Artigo em Inglês | MEDLINE | ID: mdl-38876531

RESUMO

Sandusky Bay is the drowned mouth of the Sandusky River in the southwestern portion of Lake Erie. The bay is a popular recreation location and a regional source for drinking water. Like the western basin of Lake Erie, Sandusky Bay is known for being host to summer cyanobacterial harmful algal blooms (cHABs) year after year, fueled by runoff from the predominantly agricultural watershed and internal loading of legacy nutrients (primarily phosphorus). Since at least 2003, Sandusky Bay has harbored a microcystin-producing bloom of Planktothrix agardhii, a species of filamentous cyanobacteria that thrives in low light conditions. Long-term sampling (2003-2018) of Sandusky Bay revealed regular Planktothrix-dominated blooms during the summer months, but in recent years (2019-2022), 16S rRNA gene community profiling revealed that Planktothrix has largely disappeared. From 2017-2022, microcystin decreased well below the World Health Organization (WHO) guidelines. Spring TN:TP ratios increased in years following dam removal, yet there were no statistically significant shifts in other physicochemical variables, such as water temperature and water clarity. With the exception of the high bloom of Planktothrix in 2018, there was no statistical difference in chlorophyll during all other years. Concurrent with the disappearance of Planktothrix, Cyanobium spp. have become the dominant cyanobacterial group. The appearance of other potential toxigenic genera (i.e., Aphanizomenon, Dolichospermum, Cylindrospermopsis) may motivate monitoring of new toxins of concern in Sandusky Bay. Here, we document the regime shift in the cyanobacterial community and propose evidence supporting the hypothesis that the decline in the Planktothrix bloom was linked to the removal of an upstream dam on the Sandusky River.


Assuntos
Baías , Proliferação Nociva de Algas , Fitoplâncton , Planktothrix , Fitoplâncton/fisiologia , Fitoplâncton/crescimento & desenvolvimento , Baías/microbiologia , Microcistinas/metabolismo , Microcistinas/análise , Monitoramento Ambiental , Estações do Ano , RNA Ribossômico 16S/genética , RNA Ribossômico 16S/análise , Cianobactérias/crescimento & desenvolvimento , Cianobactérias/fisiologia , Cianobactérias/genética
10.
Huan Jing Ke Xue ; 45(6): 3661-3670, 2024 Jun 08.
Artigo em Zh | MEDLINE | ID: mdl-38897785

RESUMO

The impact of microplastics (MPs) as a new type of pollutant on water pollution has become a research hotspot. To explore the response relationship between the abundance of MPs and nitrogen metabolism function in a freshwater environment, Lake Ulansuhai was used as the research object; the abundance of MPs in the water was detected using a Zeiss microscope, and the distribution characteristics of nitrogen metabolism functional bacteria and functional genes in the water were analyzed using metagenomics sequencing. The correlation analysis method was used to explore the relationship between the abundance of MPs and nitrogen metabolism functional microorganisms and nitrogen metabolism functional genes. The results showed that the presence of MPs in freshwater environments had a higher impact on Cyanobacteria and Firmicutes as the dominant phyla, and the presence of MPs promoted their enrichment and growth. Among the dominant bacterial genera, MPs promoted the growth of Mycobacterium and inhibited Candidatus_Planktopila more significantly, further indicating that in freshwater environments, MPs affected normal nitrogen metabolism by affecting microbial communities, and pathways such as carbon and nitrogen fixation and denitrification were important pathways for MPs to affect nitrogen metabolism. From the perspective of nitrogen metabolism functional genes, it was found that the abundance of MPs significantly affected some functional genes during nitrification (pmoA-amoA, pmoB-amoB, and pmoC-amoC), denitrification (nirK and napA), and dissimilatory nitrate reduction (nrfA) processes (P < 0.05). Moreover, the influence of MPs abundance on different functional genes in the same pathway of nitrogen metabolism varied, making the impact of MPs on aquatic environments very complex; thus, its harm to the water environment cannot be underestimated.


Assuntos
Bactérias , Microplásticos , Nitrogênio , Poluentes Químicos da Água , Nitrogênio/metabolismo , Poluentes Químicos da Água/metabolismo , Bactérias/metabolismo , Bactérias/genética , Bactérias/classificação , Microbiologia da Água , Cianobactérias/metabolismo , Cianobactérias/genética , Lagos/microbiologia , China , Água Doce , Monitoramento Ambiental
11.
Environ Microbiol Rep ; 16(3): e13297, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38885952

RESUMO

The Winam Gulf (Kenya) is frequently impaired by cyanobacterial harmful algal blooms (cHABs) due to inadequate wastewater treatment and excess agricultural nutrient input. While phytoplankton in Lake Victoria have been characterized using morphological criteria, our aim is to identify potential toxin-producing cyanobacteria using molecular approaches. The Gulf was sampled over two successive summer seasons, and 16S and 18S ribosomal RNA gene sequencing was performed. Additionally, key genes involved in production of cyanotoxins were examined by quantitative PCR. Bacterial communities were spatially variable, forming distinct clusters in line with regions of the Gulf. Taxa associated with diazotrophy were dominant near Homa Bay. On the eastern side, samples exhibited elevated cyrA abundances, indicating genetic capability of cylindrospermopsin synthesis. Indeed, near the Nyando River mouth in 2022, cyrA exceeded 10 million copies L-1 where there were more than 6000 Cylindrospermopsis spp. cells mL-1. In contrast, the southwestern region had elevated mcyE gene (microcystin synthesis) detections near Homa Bay where Microcystis and Dolichospermum spp. were observed. These findings show that within a relatively small embayment, composition and toxin synthesis potential of cHABs can vary dramatically. This underscores the need for multifaceted management approaches and frequent cyanotoxin monitoring to reduce human health impacts.


Assuntos
Toxinas Bacterianas , Cianobactérias , Proliferação Nociva de Algas , Lagos , Lagos/microbiologia , Lagos/química , Quênia , Cianobactérias/genética , Cianobactérias/classificação , Cianobactérias/isolamento & purificação , Cianobactérias/metabolismo , Toxinas Bacterianas/genética , Microcistinas/genética , RNA Ribossômico 16S/genética , Microbiota , Fitoplâncton/genética , Toxinas de Cianobactérias , Alcaloides/análise , Alcaloides/metabolismo , RNA Ribossômico 18S/genética , Filogenia
12.
Environ Microbiol ; 15(1): 242-52, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22978606

RESUMO

Coastal and estuarine ecosystems are highly susceptible to crude oil pollution. Therefore, in order to examine the resilience of benthic phototrophs that are pivotal to coastal ecosystem functioning, we simulated an oil spill in tidal mesocosms consisting of intact sediment cores from a mudflat at the mouth of the Colne Estuary, UK. At day 21, fluorescence imaging revealed a bloom of cyanobacteria on the surface of oiled sediment cores, and the upper 1.5 cm thick sediment had 7.2 times more cyanobacterial and 1.7 times more diatom rRNA sequences when treated with oil. Photosystem II operating efficiency (Fq'/Fm') was significantly reduced in oiled sediments at day 7, implying that the initial diatom-dominated community was negatively affected by oil, but this was no longer apparent by day 21. Oil addition significantly reduced numbers of the key deposit feeders, and the decreased grazing pressure is likely to be a major factor in the increased abundance of both diatoms and cyanobacteria. By day 5 concentrations of dissolved inorganic nitrogen were significantly lower in oiled mesocosms, likely resulting in the observed increase in nifH-containing, and therefore potentially dinitrogen-fixing, cyanobacteria. Thus, indirect effects of oil, rather than direct inhibition, are primarily responsible for altering the microphytobenthos.


Assuntos
Bactérias/metabolismo , Biodiversidade , Sedimentos Geológicos/microbiologia , Fixação de Nitrogênio , Poluição por Petróleo , Petróleo , Bactérias/genética , Carga Bacteriana , Cianobactérias/genética , Diatomáceas/genética , Diatomáceas/fisiologia , Sedimentos Geológicos/química , Dados de Sequência Molecular , Oxirredutases/genética , Complexo de Proteína do Fotossistema II/metabolismo , Poluentes Químicos da Água/análise
13.
FEMS Microbiol Ecol ; 99(3)2023 02 28.
Artigo em Inglês | MEDLINE | ID: mdl-36633537

RESUMO

Cyanobacteria are new sources of value-added compounds but also ubiquitous and harmful microfoulers on marine biofouling. In this work, the isolation and identification of two cyanobacterial strains isolated from Cape Verde and Morocco, as well as their biofilm-forming ability on glass and Perspex under controlled hydrodynamic conditions, were performed. Phylogenetic analysis revealed that cyanobacterial strains isolated belong to Leptothoe and Jaaginema genera (Leptothoe sp. LEGE 181153 and Jaaginema sp. LEGE 191154). From quantitative and qualitative data of wet weight, chlorophyll a content and biofilm thickness obtained by optical coherence tomography, no significant differences were found in biofilms developed by the same cyanobacterial strain on different surfaces (glass and Perspex). However, the biofilm-forming potential of Leptothoe sp. LEGE 181153 proved to be higher compared with Jaaginema sp. LEGE 191154, particularly at the maturation stage of biofilm development. Three-dimensional biofilm images obtained from confocal laser scanning microscopy showed different patterns between both cyanobacterial strains and also among the two surfaces. Because standard methodologies to evaluate cyanobacterial biofilm formation, as well as two different optical imaging techniques, were used, this work also highlights the possibility of integrating different techniques to evaluate a complex phenomenon like cyanobacterial biofilm development.


Assuntos
Incrustação Biológica , Cianobactérias , Clorofila A , Cabo Verde , Marrocos , Filogenia , Polimetil Metacrilato , Cianobactérias/genética , Biofilmes
14.
Plant Cell Physiol ; 52(6): 957-66, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21498404

RESUMO

A thermophilic cyanobacterium, Thermosynechococcus vulcanus RKN, exhibits cell aggregation under low temperature illuminated conditions as a means of physiological acclimation to avoid excess light stress. The cell aggregation was dispersed with cellulase treatment. We developed a method to quantify small amounts of cellulose by partial cellulose purification followed by quantitation of liberated glucose by cellulase. Under low temperature illuminated light conditions, cellulose accumulation was induced approximately 2-fold, to 10 µg (4 × 10(9) cells)(-1), and slightly preceded aggregation. Based on sequence similarity, three candidate genes for cellulose synthase (Tvtll0007, Tvtlr1795 and Tvtlr1930-33) were cloned from T. vulcanus. Gene disruption analysis showed that only Tvtll0007 was responsible for both the light- and low temperature-induced cell aggregation and the induction of cellulose accumulation. Gene expression analysis suggested that the low temperature illuminated conditions quickly induced expression of Tvtlr1795 and Tvtlr1930-33, while the induction of Tvtll0007 was slow. These results suggest that Tvtll0007 encodes a functional cellulose synthase whose activity may not be regulated at the transcriptional level.


Assuntos
Celulose/metabolismo , Cianobactérias/crescimento & desenvolvimento , Genes Bacterianos , Glucosiltransferases/genética , Aclimatação , Celulase/metabolismo , Celulose/análise , Clonagem Molecular , Cianobactérias/genética , DNA Bacteriano/genética , Regulação Bacteriana da Expressão Gênica , Glucose/análise , Glucose/metabolismo , Luz , Temperatura , Transcrição Gênica
15.
Arch Microbiol ; 193(2): 105-14, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21076816

RESUMO

The bacterioplankton diversity of coastal waters along a latitudinal gradient between Puerto Rico and Argentina was analyzed using a total of 134,197 high-quality sequences from the V6 hypervariable region of the small-subunit ribosomal RNA gene (16S rRNA) (mean length of 60 nt). Most of the OTUs were identified into Proteobacteria, Bacteriodetes, Cyanobacteria, and Actinobacteria, corresponding to approx. 80% of the total number of sequences. The number of OTUs corresponding to species varied between 937 and 1946 in the seven locations. Proteobacteria appeared at high frequency in the seven locations. An enrichment of Cyanobacteria was observed in Puerto Rico, whereas an enrichment of Bacteroidetes was detected in the Argentinian shelf and Uruguayan coastal lagoons. The highest number of sequences of Actinobacteria and Acidobacteria were obtained in the Amazon estuary mouth. The rarefaction curves and Good coverage estimator for species diversity suggested a significant coverage, with values ranging between 92 and 97% for Good coverage. Conserved taxa corresponded to aprox. 52% of all sequences. This study suggests that human-contaminated environments may influence bacterioplankton diversity.


Assuntos
Bactérias/classificação , Plâncton/classificação , Microbiologia da Água , Actinobacteria/genética , Actinobacteria/isolamento & purificação , Bactérias/genética , Bactérias/isolamento & purificação , Bacteroidetes/genética , Bacteroidetes/isolamento & purificação , Biodiversidade , Cianobactérias/genética , Cianobactérias/isolamento & purificação , Humanos , América Latina , Plâncton/genética , Plâncton/isolamento & purificação , Proteobactérias/genética , Proteobactérias/isolamento & purificação , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
16.
Appl Microbiol Biotechnol ; 89(3): 825-34, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20922384

RESUMO

Iodine recovery at a natural gas production plant in Japan involved the addition of sulfuric acid for pH adjustment, resulting in an additional about 200 mg/L of sulfate in the waste brine after iodine recovery. Bioclogging occurred at the waste brine injection well, causing a decrease in well injectivity. To examine the factors that contribute to bioclogging, an on-site experiment was conducted by amending 10 L of brine with different conditions and then incubating the brine for 5 months under open air. The control case was exposed to open air but did not receive additional chemicals. When sulfate addition was coupled with low iodine, there was a drastic increase in the total amount of accumulated biomass (and subsequently the risk of bioclogging) that was nearly six times higher than the control. The bioclogging-associated corrosion rate of carbon steel was 84.5 µm/year, which is four times higher than that observed under other conditions. Analysis of the microbial communities by denaturing gradient gel electrophoresis revealed that the additional sulfate established a sulfur cycle and induced the growth of phototrophic bacteria, including cyanobacteria and purple bacteria. In the presence of sulfate and low iodine levels, cyanobacteria and purple bacteria bloomed, and the accumulation of abundant biomass may have created a more conducive environment for anaerobic sulfate-reducing bacteria. It is believed that the higher corrosion rate was caused by a differential aeration cell that was established by the heterogeneous distribution of the biomass that covered the surface of the test coupons.


Assuntos
Cianobactérias/crescimento & desenvolvimento , Iodo/metabolismo , Proteobactérias/crescimento & desenvolvimento , Aço , Sulfatos/metabolismo , Biomassa , Análise por Conglomerados , Corrosão , Cianobactérias/classificação , Cianobactérias/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Eletroforese em Gel de Poliacrilamida , Combustíveis Fósseis , Japão , Dados de Sequência Molecular , Desnaturação de Ácido Nucleico , Filogenia , Polimorfismo de Fragmento de Restrição , Proteobactérias/classificação , Proteobactérias/genética , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
17.
J Bacteriol ; 190(11): 3808-16, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18375558

RESUMO

Squalene synthase (SQS) is a bifunctional enzyme that catalyzes the condensation of two molecules of farnesyl diphosphate (FPP) to give presqualene diphosphate (PSPP) and the subsequent rearrangement of PSPP to squalene. These reactions constitute the first pathway-specific steps in hopane biosynthesis in Bacteria and sterol biosynthesis in Eukarya. The genes encoding SQS were isolated from the hopane-producing bacteria Thermosynechococcus elongatus BP-1, Bradyrhizobium japonicum, and Zymomonas mobilis and cloned into an Escherichia coli expression system. The expressed proteins with a His(6) tag were found exclusively in inclusion bodies when no additives were used in the buffer. After extensive optimization, soluble recombinant T. elongatus BP-1 SQS was obtained when cells were disrupted and purified in buffers containing glycerol. The recombinant B. japonicum and Z. mobilis SQSs could not be solubilized under any of the expression and purification conditions used. Purified T. elongatus His(6)-SQS gave a single band at 42 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and molecular ion at m/z 41886 by electrospray mass spectrometry. Incubation with FPP and NADPH gave squalene as the sole product. Incubation of the enzyme with [(14)C]FPP in the absence of NADPH gave PSPP. The enzyme requires Mg(2+) for activity, has an optimum pH of 7.6, and is strongly stimulated by detergent. Under optimal conditions, the K(m) of FPP is 0.97 +/- 0.10 microM and the k(cat) is 1.74 +/- 0.04 s(-1). Zaragozic acid A, a potent inhibitor of mammalian, fungal, and Saccharomyces cerevisiae SQSs, also inhibited recombinant T. elongatus BP-1 SQS, with a 50% inhibitory concentration of 95.5 +/- 13.6 nM.


Assuntos
Cianobactérias/enzimologia , Farnesil-Difosfato Farnesiltransferase/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , Cianobactérias/genética , Farnesil-Difosfato Farnesiltransferase/química , Farnesil-Difosfato Farnesiltransferase/genética , Regulação Bacteriana da Expressão Gênica , Concentração de Íons de Hidrogênio , Cloreto de Magnésio , Dados de Sequência Molecular , Estrutura Molecular , Polissorbatos , Alinhamento de Sequência , Solubilidade , Esqualeno/química , Esqualeno/metabolismo , Temperatura
18.
FEMS Microbiol Ecol ; 93(4)2017 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-28334116

RESUMO

Harmful cyanobacterial blooms (cyanoHABs) are a major threat to freshwater ecosystems worldwide. Evidence suggests that both nitrogen and phosphorus are important nutrients in the development and proliferation of blooms, yet much less is known about nitrogen cycling dynamics in these systems. To assess the potential nitrogen cycling function of the cyanoHAB community, surface water samples were collected in Lake Tai (Taihu), China over a 5-month bloom event in 2014. The expression of six nitrogen cycling genes (nifH, hzsA, nxrB, nrfA, amoA, nosZ) was surveyed using a targeted microarray with probes designed to provide phylogenetic information. N-Cycling gene expression varied spatially across Taihu, most notably near the mouth of the Dapu River. Expression of nifH was observed across the lake and attributable to both Proteobacteria and Cyanobacteria: Proteobacteria were major contributors to nifH signal near shore. Other N transformations such as anaerobic ammonia oxidation and denitrification were evident in the surface waters as well. Observations in this study highlight the potential importance of heterotrophic bacteria in N-cycling associated with cyanoHABs.


Assuntos
Lagos/microbiologia , Ciclo do Nitrogênio , Nitrogênio/metabolismo , China , Cianobactérias/genética , Ecossistema , Monitoramento Ambiental , Eutrofização , Processos Heterotróficos , Fósforo/análise , Filogenia , Rios
19.
Trends Biotechnol ; 33(6): 352-61, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25908503

RESUMO

Through metabolic engineering cyanobacteria can be employed in biotechnology. Combining the capacity for oxygenic photosynthesis and carbon fixation with an engineered metabolic pathway allows carbon-based product formation from CO(2), light, and water directly. Such cyanobacterial 'cell factories' are constructed to produce biofuels, bioplastics, and commodity chemicals. Efforts of metabolic engineers and synthetic biologists allow the modification of the intermediary metabolism at various branching points, expanding the product range. The new biosynthesis routes 'tap' the metabolism ever more efficiently, particularly through the engineering of driving forces and utilization of cofactors generated during the light reactions of photosynthesis, resulting in higher product titers. High rates of carbon rechanneling ultimately allow an almost-complete allocation of fixed carbon to product above biomass.


Assuntos
Cianobactérias/metabolismo , Engenharia Metabólica , Plásticos/síntese química , Biologia Sintética , Biocombustíveis , Biomassa , Biotecnologia , Dióxido de Carbono/metabolismo , Cianobactérias/genética , Humanos , Luz , Fotossíntese/genética , Plásticos/metabolismo
20.
Mar Biotechnol (NY) ; 6(4): 355-63, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15136915

RESUMO

Spirulina platensis is one of the most commercially important species of microalgae. Thus, it is an attractive candidate for genetic manipulation and the development of novel practical applications. However, this process is hampered by the absence of a stable gene transfer system, specifically the limited number of suitable vectors and transformation methods available for this organism. Artificial transposon systems developed by extracting the essential elements from natural transposons have been extensively studied, and recently a mutated transposase and transposon system was reported to improve transformation efficiency by electroporation. We applied a modified transformation strategy using a natural Tn5 transposon, transposase, and cation liposome complex by electroporation to improve the transformation efficiency for Spirulina platensis strain C1 (Arthrospira sp. PCC9438). Aggregation of cells became visible after 3 weeks during 2.0 microg/ml chloramphenicol selection, and growth continued for more than 12 months. Transfected chloramphenicol acetyltransferase (CAT) genes were detected in the genomic DNA by Southern hybridization. Transformed cells demonstrated CAT activity, but non-transformed cells did not.


Assuntos
Cloranfenicol O-Acetiltransferase/genética , Cianobactérias/genética , Técnicas de Transferência de Genes , Transformação Genética/genética , Sequência de Bases , Southern Blotting , Cloranfenicol O-Acetiltransferase/metabolismo , Cianobactérias/metabolismo , Primers do DNA , Elementos de DNA Transponíveis/genética , Lipossomos , Dados de Sequência Molecular , Plasmídeos/genética , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , Fatores de Tempo , Transposases/metabolismo
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