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1.
Small ; 20(23): e2310946, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38229536

RESUMEN

Owing to their extraordinary photophysical properties, organometal halide perovskites are emerging as a new material class for X-ray detection. However, the existence of toxic lead makes their commercialization questionable and should readily be replaced. Accordingly, several lead alternatives have been introduced into the framework of conventional perovskites, resulting in various new perovskite dimensionalities. Among these, Pb-free lower dimensional perovskites (LPVKs) not only show promising X-ray detecting properties due to their higher ionic migration energy, wider and tunable energy bandgap, smaller dark currents, and structural versatility but also exhibit extended environmental stability. Herein, first, the structural organization of the PVKs (including LPVKs) is summarized. In the context of X-ray detectors (XDs), the outstanding properties of the LPVKs and active layer synthesis routes are elaborated afterward. Subsequently, their applications in direct XDs are extensively discussed and the device performance, in terms of the synthesis method, device architecture, active layer size, figure of merits, and device stability are tabulated. Finally, the review is concluded with an in-depth outlook, thoroughly exploring the present challenges to LPVKs XDs, proposing innovative solutions, and future directions. This review provides valuable insights into optimizing non-toxic Pb-free perovskite XDs, paving the way for future advancements in the field.

2.
Chem Rec ; 24(1): e202300247, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-37933973

RESUMEN

The high-temperature solid oxide fuel cells (SOFCs) are the most efficient and green conversion technology for electricity generation from hydrogen-based fuel as compared to conventional thermal power plants. Many efforts have been made to reduce the high operating temperature (>800 °C) to intermediate/low operating temperature (400 °C

3.
Anal Bioanal Chem ; 416(20): 4571-4580, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38902347

RESUMEN

Recently, open tubular capillary electrochromatography (OT-CEC) has captured considerable interest; its efficient separation capability hinges on the interactions between analytes and polymer coatings. However, in situ growth of stimuli-responsive polymers as coatings has been rarely studied and is crucial for expanding the OT-CEC technique and its application. Herein, following poly(styrene-maleicanhydride) (PSM) chemically bonded onto the inner surface of the capillary, a dual pH/temperature stimuli-responsive block copolymer, P(SMN-COOH), was prepared by in situ polymerizing poly(N-isopropylacrylamide) carboxylic acid terminated [P(N-COOH)] in PSM. An OT-CEC protocol was first explored using the coated capillary for epimedins separation. As a proof of concept, the developed OT-CEC system facilitated hydrogen bonding and tuning the hydrophilic/hydrophobic interactions between the test analytes and the P(SMN-COOH) coating by varying buffer pH and environmental temperature. Four epimedins with similar chemical structures were baseline separated under 40 °C at pH 10.0, exhibiting dramatical improvement in separation efficiency in comparison to its performance under 25 °C at pH 4.0. In addition, the coated capillary showed good repeatability and reusability with relative standard deviations for migration time and peak area between 0.7 and 1.7% and between 2.9 and 4.6%, respectively, and no significant changes after six runs. This work introduces a paradigm for efficient OT-CEC separation of herbal medicines through adjusting the interactions between analytes and smart polymer coatings, addressing polymer coating design and OT-CEC challenges.

4.
Phys Chem Chem Phys ; 26(31): 20971-20983, 2024 Aug 07.
Artículo en Inglés | MEDLINE | ID: mdl-39046419

RESUMEN

Insufficient proton conductivity and oxidative stability of sulfonated hydrocarbons hinder their applicability as proton exchange membrane electrolytes in fuel cells. In this regard, fabrication of proton conducting mixed-matrix membranes (PC-MMMs) can be a superior approach to obtain desirable properties. In this work, a triazole ligand (1H-1,2,4 triazole) was coordinated to a zinc metal node to create a 3D metal-organic framework (MOF) and incorporated as an additive in a sulfonated poly(ether ether ketone) matrix at 1, 3, and 5 weight percentage to fabricate PC-MMMs by the casting process. Several characterization tools such as electrochemical impedance spectroscopy, Fourier transform infrared spectroscopy and scanning electron microscopy were used to characterise these membranes and study their potential application as electrolyte(s) in PEMFCs (proton exchange membrane fuel cells). Membranes were also tested for water uptake, ion-exchange capacity and oxidative stability in Fenton's reagent. The performance of the polymeric composite membrane containing a 3 wt% MOF was then assessed in a H2/O2 single cell as it demonstrated the highest proton conductivity of 0.04 S cm-1 among all the compositions and a maximum current density of 1191 mA cm-2. The membrane was also subjected to an OCV hold test for 12 hours to study the chemical durability over a period of time. This report establishes that the inclusion of a triazole based MOF enhances the proton conductivity, performance, and thermal and chemical durability of composite membranes which can be considered as a promising electrolyte material at intermediate temperatures after a proper optimisation of different cell parameters.

5.
Molecules ; 29(16)2024 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-39202917

RESUMEN

Lignocellulose is a major biopolymer in plant biomass with a complex structure and composition. It consists of a significant amount of high molecular aromatic compounds, particularly vanillin, syringeal, ferulic acid, and muconic acid, that could be converted into intracellular metabolites such as polyhydroxyalkanoates (PHA) and hydroxybutyrate (PHB), a key component of bioplastic production. Several pre-treatment methods were utilized to release monosaccharides, which are the precursors of the relevant pathway. The consolidated bioprocessing of lignocellulose-capable microbes for biomass depolymerization was discussed in this study. Carbon can be stored in a variety of forms, including PHAs, PHBs, wax esters, and triacylglycerides. From a biotechnology standpoint, these compounds are quite adaptable due to their precursors' utilization of hydrogen energy. This study lays the groundwork for the idea of lignocellulose valorization into value-added products through several significant dominant pathways.


Asunto(s)
Lignina , Lignina/química , Lignina/metabolismo , Biomasa , Alimentos , Polihidroxialcanoatos/química , Polihidroxialcanoatos/biosíntesis , Polihidroxialcanoatos/metabolismo , Residuos , Biopolímeros/química , Biopolímeros/metabolismo , Alimento Perdido y Desperdiciado
6.
Prep Biochem Biotechnol ; : 1-10, 2024 Oct 02.
Artículo en Inglés | MEDLINE | ID: mdl-39356798

RESUMEN

This study investigated the ultrasound-assisted extraction (UAE) techniques used to enhance the polyphenols and antioxidants of mango peel extract (MPE). Additionally, it explored the bacteriostatic activity of MPE against various microorganisms. The UAE method was optimized using response surface methodology (RSM) at different times, temperatures, and ratios, with optimal conditions found to be 35 minutes, 45 °C, and a 1:35 ratio. The optimized yield results for total polyphenol content (TPC) were 17.33 ± 1.57 mg GAE/g, total flavonoid content (TFC) was 12.14 ± 0.29 mg QE/g, and radical scavenging activity (RSA) was 72.11 ± 2.19%. These response models were extremely significant with p-values less than 0.05. MPE showed selective effectiveness against Bacillus cereus, Geobacillus stearothermophilus, and Escherichia coli (E. coli). The results highlight the potential of mango peel as a sustainable source of bioactive compounds, contributing to waste reduction in the food industry and the development of natural antimicrobial agents. This study contributes to further research on the application of MPE in processed foods.

7.
Pak J Med Sci ; 40(1Part-I): 20-25, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38196467

RESUMEN

Objective: The current study was designed to explore the relationship of TIMI and SYNTAX risk score to predict the CAD extent and severity in STEMI patients. Methods: For this cross-sectional study, 304 STEMI patients undergoing PPCI were enrolled at Department of Interventional Cardiology NICVD Karachi from September 2021 to January 2022. and the TIMI risk score was determined at enrolment. Based on these scorings, the patients were grouped as low, intermediate, and high risk, i.e., a score of ≤ 3, 4 to 7, and ≥ 8, respectively. The SYNTAX scores were utilized to assess the extent of CAD. Results: Statistically significant difference was found in symptoms to balloon time (p=0.001), history of diabetes (p=0.006), angina (p=0.011), obesity (p=0.048), STEMI type (p=0.003), Killip classes (p=0.000), Infarct-Related Artery (p=0.006), number of diseased vessels (p<0.01), LMS > 50% (p=0.000), PCI type (p<0.01), collateral circulation (p<0.01), In-hospital mortality (p<0.01), LV support (p<0.01), and post-procedural TIMI flow (p=0.013), among the three TIMI risk groups. Significant correlation was found among TIMI risk score and SYNTAX score. Conclusion: It is observed that the TIMI risk scores are highly correlated with the SYNTAX Score in predicting the CAD severity in STEMI patients.

8.
Langmuir ; 39(20): 7109-7121, 2023 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-37156095

RESUMEN

One of the main objectives in wastewater treatment and sustainable energy production is to find photocatalysts that are favorably efficient and cost-effective. Transition-metal dichalcogenides (TMDs) are promising photocatalytic materials; out of all, MoS2 is extensively studied as a cocatalyst in the TMD library due to its exceptional photocatalytic activity for the degradation of organic dyes due to its distinctive morphology, adequate optical absorption, and rich active sites. However, sulfur ions on the active edges facilitate the catalytic activity of MoS2. On the basal planes, sulfur ions are catalytically inactive. Injecting metal atoms into the MoS2 lattice is a handy approach for triggering the surface of the basal planes and enriching catalytically active sites. Effective band gap engineering, sulfur edges, and improved optical absorption of Mn-doped MoS2 nanostructures are promising for improving their charge separation and photostimulated dye degradation activity. The percentage of dye degradation of MB under visible-light irradiations was found to be 89.87 and 100% for pristine and 20% Mn-doped MoS2 in 150 and 90 min, respectively. However, the degradation of MB dye was increased when the doping concentration in MoS2 increased from 5 to 20%. The kinetic study showed that the first-order kinetic model described the photodegradation mechanism well. After four cycles, the 20% Mn-doped MoS2 catalysts maintained comparable catalytic efficacy, indicating its excellent stability. The results demonstrated that the Mn-doped MoS2 nanostructures exhibit exceptional visible-light-driven photocatalytic activity and could perform well as a catalyst for industrial wastewater treatment.

9.
J Pak Med Assoc ; 73(6): 1297-1301, 2023 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-37427635

RESUMEN

Synovial Sarcoma (SS) is a rare soft-tissue malignant tumour. Its presentation in the head and neck region is uncommon. Because of the complex anatomy of the head and neck region, surgery with clear margins is not achievable. In such cases, a multi-modality approach is required as there is no established standard of care. In this report, we share the case of a girl who presented with nasal obstruction. Imaging revealed a mass involving the left nasal cavity, paranasal sinuses without intracranial extension. It was diagnosed as synovial sarcoma. She underwent surgical excision and adjuvant radiation therapy (RT) to the tumour bed, followed by an incomplete course of chemotherapy. Later on, she developed systemic disease. Considering the rarity of this case and lack of guidelines for standard treatment, we report on this case to share our experience with management and treatment outcome.


Asunto(s)
Senos Paranasales , Sarcoma Sinovial , Femenino , Humanos , Sarcoma Sinovial/diagnóstico por imagen , Sarcoma Sinovial/cirugía , Cuello , Resultado del Tratamiento , Cabeza/patología
10.
Langmuir ; 38(4): 1578-1588, 2022 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-35072482

RESUMEN

Nanostructures of layered 2D materials have been proven one of the significant recent trends for visible-light-driven photocatalysis because of their unique morphology, effective optical adsorption, and rich active sites. Herein, we synthesized ultrathin-layered MoS2 nanoflowers and nanosheets with rich active sites by using a facile hydrothermal technique. The photocatalytic performance of the as-synthesized MoS2 nanoflowers (NF) and nanosheets (NS) were investigated for the photodegradation of MB (methylene blue), MG (malachite Green), and RhB (rhodamine B) dye under visible light irradiations. Ultrathin-layered nanoflowers showed faster degradation (96% in 150 min) in RhB under visible light irradiation, probably due to a large number of active sites and high available surface area. The kinetic study demonstrated that the first-order kinetic model best explained the process of photodegradation. The MoS2 nanoflowers catalysts has similar catalytic performance after four consecutive cyclic performances, demonstrating their good stability. The results showed that the MoS2 nanoflowers have outstanding visible-light-driven photocatalytic activity and could be an effective catalyst for industrial wastewater treatment.

11.
Biotechnol Lett ; 44(2): 193-202, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-35119573

RESUMEN

Nervonic acid (cis-15-tetracosenoic acid, 24:1Δ15) is a long chain monounsaturated fatty acid, mainly exists in white matt er of the human brains. It plays an important role in the development of nervous system and curing neurological diseases. The limited natural sources and high price are considered limiting factors for the extensive application of nervonic acid. Yarrowia lipolytica is a high lipid producing yeast and engineered strain which can produce nervonic acid. The biosynthesis of nervonic acid has yet to be investigated, although the metabolism has been examined for couple of years. Normally, oleic acid is considered the origin of nervonic acid synthesis through fatty acid prolongation, where malonyl-CoA and acyl-CoA are initially concise by 3-ketoacyl-CoA synthase (KCS). To meet the high requirement of industrial production, the optimization of fermentation and bioreactors configurations are necessary tools to be carried out. This review article summarizes the research literature on advancements and recent trends about the production, synthesis and properties of nervonic acid.


Asunto(s)
Yarrowia , Ácidos Grasos/metabolismo , Ácidos Grasos Monoinsaturados/metabolismo , Fermentación , Humanos , Yarrowia/genética , Yarrowia/metabolismo
12.
J Pak Med Assoc ; 72(6): 1208-1210, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35751338

RESUMEN

A retrospective review was conducted In Aga Khan University from January 2013-December 2020 for patients who received Total Skin Electron Beam Therapy (TSEBT) on the management of Mycosis Fungoides (MF). The clinical response rate and disease-free interval (DFI) was evaluated for three patients. All of the patients received a 3600 cGy dose of radiation. Clinical complete remission (cCR) was observed in two out of three patients, while one patient showed clinical partial response. Following the cCR to TSEBT, the DFI of the first patient with stage 1B lasted 30 months, while the second patient with stage IIB remained disease free for five months. TSEBT is an effective treatment for MF disease. It can thus be expected that patients with limited disease in the early stage can acquire a cCR with a longer DFI. The clinical outcomes of our study show concordance with the literature. The patients who had extensive (T3) skin involvement and had refractory diseases showed lower DFI with radiation.


Asunto(s)
Micosis Fungoide , Neoplasias Cutáneas , Electrones , Humanos , Micosis Fungoide/tratamiento farmacológico , Micosis Fungoide/radioterapia , Estudios Retrospectivos , Neoplasias Cutáneas/radioterapia , Resultado del Tratamiento
13.
J Pak Med Assoc ; 72(9): 1865-1867, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-36280995

RESUMEN

We report a case of a middle age male who presented to our tertiary care university hospital with the complaints of nasal obstruction and decrease hearing. The CT scan of head and neck exhibited a mass in nasopharynx and enlarged bilateral cervical lymph nodes. Biopsy from nasopharynx confirmed the lesion as poorly differentiated non-keratinizing squamous cell carcinoma and staged as cT2N2M0. He received neoadjuvant chemotherapy. Subsequently, he underwent chemo radiation therapy. He represented with left chest wall pain. Imaging confirmed isolated lesion on left sided 6th rib. Rib lesion was resected followed by radiation therapy to surgical bed and systemic treatment. The patient remained disease free for 4.5 years. Later, his disease relapsed, and he died of systemic disease progression. To the best of the author's knowledge, only few cases have been reported with isolated rib metastasis from nasopharyngeal carcinoma and this is the first case in which metastasectomy was considered.


Asunto(s)
Metastasectomía , Neoplasias Nasofaríngeas , Persona de Mediana Edad , Masculino , Humanos , Carcinoma Nasofaríngeo , Cuello , Neoplasias Nasofaríngeas/diagnóstico por imagen , Neoplasias Nasofaríngeas/terapia , Neoplasias Nasofaríngeas/patología , Costillas/diagnóstico por imagen , Costillas/patología
14.
Semin Cancer Biol ; 64: 19-28, 2020 08.
Artículo en Inglés | MEDLINE | ID: mdl-31100322

RESUMEN

Cancer and autoimmune diseases are the two devastating conditions that together constitute a leading health problem worldwide. The rising burden of these disorders in the developing world demands a multifaceted approach to address the challenges it poses. Understanding the root causes and specific molecular mechanisms by which the progression of the diseases takes place is need of the hour. A strong inflammatory background and common developmental pathways, such as activation of immune cells, proliferation, increased cell survival and migration which are controlled by growth factors and inflammatory cytokines have been considered as the critical culprits in the progression and complications of these disorders. Enzymes are the potential immune modulators which regulate various inflammatory events and can break the circulating immune complexes via macrophages production. In the current manuscript, we have uncovered the possible role of proteolytic enzymes in the pathogenesis and progression of cancer and autoimmune diseases. In the light of the available scientific literature, we advocate in-depth comprehensive studies which will shed light towards the role of proteolytic enzymes in the modulation of inflammatory responses in cancer and autoimmune diseases together.


Asunto(s)
Enfermedades Autoinmunes/inmunología , Autoinmunidad/inmunología , Neoplasias/inmunología , Péptido Hidrolasas/metabolismo , Animales , Enfermedades Autoinmunes/complicaciones , Enfermedades Autoinmunes/enzimología , Enfermedades Autoinmunes/patología , Citocinas/metabolismo , Humanos , Neoplasias/complicaciones , Neoplasias/enzimología , Neoplasias/patología , Péptido Hidrolasas/inmunología
15.
Nanotechnology ; 32(19): 195503, 2021 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-33470969

RESUMEN

The introduction of heterostructures is a new approach in gas sensing due to their easy and quick transport of charges. Herein, facile hydrothermal and solid-state techniques are employed to synthesize an α-Fe2O3/Nb2O5 heterostructure. The morphology, microstructure, crystallinity and surface composition of the synthesized heterostructures are investigated by scanning electron microscope, transmission electron microscope, x-ray diffraction, x-ray photoelectron spectroscopy and Brunauer-Emmett-Teller analyses. The successful fabrication of the heterostructures was achieved via the mutual incorporation of α-Fe2O3 nanorods with Nb2O5 interconnected nanoparticles (INPs). A sensor based on the α-Fe2O3(0.09)/Nb2O5 heterostructure with a high surface area exhibited enhanced gas-sensing features, maintaining high selectivity and sensitivity, and a considerable recovery percentage towards ethanol gas. The sensing response of the α-Fe2O3(0.09)/Nb2O5 heterostructure at lower operating temperature (160 °C) is around nine times higher than a pure Nb2O5 (INP) sensor at 180 °C with the flow of 100 ppm ethanol gas. The sensors also show excellent selectivity, good long-term stability and a rapid response/recovery time (8s/2s, respectively) to ethanol. The superior electronic conductivity and upgraded sensitivity performance of gas sensors based on the α-Fe2O3(0.09)/Nb2O5 heterostructure are attributed due to its unique structural features, high specific surface area and the synergic effect of the n-n heterojunction. The promising results demonstrate the potential application of the α-Fe2O3(0.09)/Nb2O5 heterostructure as a good sensing material for the fabrication of ethanol sensors.

16.
Int J Clin Pract ; 75(4): e13864, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33236505

RESUMEN

OBJECTIVE: To assess the impact of metformin use on health-related quality of life (HRQoL) in tuberculosis (TB) patients who are presented with type 2 diabetes mellitus (T2DM). METHODOLOGY: In this community-based prospective study, TB patients attending Hakeem Abdul Hameed Centenary Hospital, New Delhi (India) and had comorbidity of T2DM between April 2018 and July 2019 were enrolled. Patients were divided into metformin users and metformin non-users on the basis of the presence of metformin in their routine as antidiabetic drug(s). HRQoL was determined using a validated TB-specific tool (Dhingra and Rajpal-12 scale ie, DR-12) consists of symptom and socio-psychological and exercise adaptation domains. The HRQoL scores were compared at pretreatment (1st visit), end of intensive phase (2nd visit) and end of treatment (3rd visit) between the two groups. RESULTS: A total of 120 patients were enrolled, of which 24 were excluded as they did not respond at follow-up visits. Among the metformin users (n = 48) the mean age of patients was 47.56 years and 62.50% was males. Among the metformin non-users (n = 48), the mean age of patients was 49.02 years and 54.10% was males. The baseline characteristics were similar in both groups except for the substance used history (P = .025), literacy level (P = .048) and BMI (P = .028). Metformin users demonstrated significant improvement in symptom scores (2nd visit: P < .001; 3rd visit: P = .001) and socio-psychological and exercise adaptation scores (2nd visit: P < .0001; 3rd visit: P < .0001) as compared with metformin non-users at 2nd visit and 3rd visit. Overall, scores were also found to be significantly improved in metformin users (2nd visit: P < .001; 3rd visit: P = .001). CONCLUSION: Metformin therapy exerted favourable effects on HRQoL in patients with TB and T2DM and can be recommended as an adjuvant antitubercular drug in TB patients with co-morbidity of T2DM, unless contraindicated.


Asunto(s)
Diabetes Mellitus Tipo 2 , Metformina , Tuberculosis , Diabetes Mellitus Tipo 2/complicaciones , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Diabetes Mellitus Tipo 2/epidemiología , Humanos , Hipoglucemiantes/uso terapéutico , India/epidemiología , Masculino , Metformina/uso terapéutico , Persona de Mediana Edad , Estudios Prospectivos , Calidad de Vida
17.
Mikrochim Acta ; 188(5): 177, 2021 04 28.
Artículo en Inglés | MEDLINE | ID: mdl-33907901

RESUMEN

Nanocomposites can offer a platform to conjugate biorecognition features of aptamer with unique size-dependent properties of a given material, which can autoprobe the binding event based on their electroactive characteristics. Herein, we design electroactive switchable aptamer probes based on co-doped single-phase semiconducting materials employing the cyclic voltammetry method to record the current signal at each step of electrochemical characterization. To do so, we utilized a facile hydrothermal method assisted by co-precipitation method such as Co-Fe-co-doped Ba0.5Sr0.5Zr0.1Y0.1O3-δ (CF-BSZY) and tuned the alignment of the energy band structure of the material to amplify the output of the electrochemical signal. At various steps, changes occurred in the electrochemical properties at the surface of CF-BSZY. The binding of the ssDNA with prepared materials enhances the current signal by the interaction with the target (ochratoxin A (OTA)) depressing the current signal and facilitating the construction of a novel design of electrochemical aptasensor. As a proof of concept, an electrochemical aptasensor for the detection of ochratoxin A (OTA) in rice samples has been developed. The electrochemical aptasensor provides a limit of detection (LOD) of 0.00012 µM (0.12 nM), with a linear range from 0.000247 to 0.74 µM and sound OTA recovery in real samples. The developed aptasensor is simply designed and is free of oligonucleotide labeling or decorative nanoparticle modifications. The proposed mechanism is generic in principle with the potential to translate any type of aptamer and target binding event into a detectable signal; hence, it can be largely applied to various bioreceptor recognition phenomena for subsequent applications.


Asunto(s)
Aptámeros de Nucleótidos/química , Metales Pesados/química , Ocratoxinas/análisis , Semiconductores , Técnicas Biosensibles/métodos , ADN de Cadena Simple/química , Técnicas Electroquímicas/métodos , Contaminación de Alimentos/análisis , Límite de Detección , Ocratoxinas/química , Oryza/química , Prueba de Estudio Conceptual , Reproducibilidad de los Resultados
18.
Appl Environ Microbiol ; 86(16)2020 08 03.
Artículo en Inglés | MEDLINE | ID: mdl-32532871

RESUMEN

Pectin deconstruction is the initial step in breaking the recalcitrance of plant biomass by using selected microorganisms that encode pectinolytic enzymes. Pectate lyases that cleave the α-1,4-galacturonosidic linkage of pectin are widely used in industries such as papermaking and fruit softening. However, there are few reports on pectate lyases with good thermostability. Here, two pectate lyases (CbPL3 and CbPL9) from a hyperthermophilic bacterium, Caldicellulosiruptor bescii, belonging to family 3 and family 9 polysaccharide lyases, respectively, were investigated. The biochemical properties of the two CbPLs were shown to be similar under optimized conditions of 80°C to 85°C and pH 8 to 9. However, the degradation products from pectin and polygalacturonic acids (pGAs) were different. A family 66 carbohydrate-binding module (CbCBM66) located in the N terminus of the two CbPLs shares 100% amino acid identity. A CbCBM66-truncated mutant of CbPL9 showed lower activities than the wild type, whereas CbPL3 with a CbCBM66 knockout portion was reported to have enhanced activities, thereby revealing the different effect of CbCBM66. Prediction by the I-TASSER server revealed that CbCBM66 is structurally close to BsCBM66 from Bacillus subtilis; however, the COFACTOR and COACH programs indicated that the substrate-binding sites between CbCBM66 and BsCBM66 are different. Furthermore, a substrate-binding assay indicated that the catalytic domains in the two CbPLs had strong affinities for pectate-related substrates, but CbCBM66 showed a weak interaction with a number of lignocellulosic carbohydrates. Finally, scanning electron microscopy (SEM) analysis and a total reducing sugar assay showed that the two enzymes could improve the saccharification of switchgrass. The two CbPLs are impressive sources for the degradation of plant biomass.IMPORTANCE Thermophilic proteins could be implemented in diverse industrial applications. We sought to characterize two pectate lyases, CbPL3 and CbPL9, from a thermophilic bacterium, Caldicellulosiruptor bescii The two enzymes share a high optimum temperature, a low optimum pH, and good thermostability at the evaluated temperature. A family 66 carbohydrate-binding module (CbCBM66) was identified in the two CbPLs, sharing 100% amino acid identity. The deletion of CbCBM66 dramatically decreased the activity of CbPL9 but increased the activity and thermostability of CbPL3, suggesting different roles of CbCBM66 in the two enzymes. Moreover, the degradation products of the two CbPLs were different. These results revealed that these enzymes could represent potential pectate lyases for applications in the paper and textile industries.


Asunto(s)
Proteínas Bacterianas/genética , Firmicutes/genética , Pectinas/metabolismo , Polisacárido Liasas/genética , Proteínas Bacterianas/metabolismo , Biomasa , Caldicellulosiruptor , Escherichia coli/enzimología , Escherichia coli/genética , Firmicutes/enzimología , Microorganismos Modificados Genéticamente/enzimología , Microorganismos Modificados Genéticamente/genética , Polisacárido Liasas/metabolismo
19.
Arch Microbiol ; 202(1): 31-41, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31456050

RESUMEN

Anaerobic digestion, a recently hot technology to produce biogases especially methane generation for biofuel from wastewater, is considered an effective explanation for energy crisis and global pollution threat. A complex microbiome population is present in sludge, which plays an important role in the digestion of complex polymer into simple monomers. 16S rRNA approaches simply are not enough for amplification due to the involvement of extreme complex population. However, Illumina sequencing is a recent powerful technology to reveal the entire microbiome structure and methane generation pathways in anaerobic digestion. Metagenomic sequencing was tested to reveal the microbial structure of a digested sludge from a local wastewater treatment plant in Beijing. The Illumina HiSeq program was used to extract about 5 GB of data for metagenomic analysis. The classification investigation revealed about 97.64% dominancy of bacteria while 1.78% were detected to be archaea using MG-RAST server. The most abundant bacterial communities were reported to be Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria. Furthermore, the important microbiome involved in methane generation was revealed. The dominant methanogens were detected (Methanosaeta and Methanosarcina), with affiliation of dominant genes involved in acetoclastic methanogenesis in a digesting sludge. The metagenomic analysis showed that microbial structure and methane generation pathways were successfully dissected in an anaerobic digester.


Asunto(s)
Biocombustibles/microbiología , Genoma Microbiano/genética , Metagenoma/genética , Metano/metabolismo , Aguas del Alcantarillado/microbiología , Anaerobiosis , Archaea/genética , Bacterias/genética , Secuenciación de Nucleótidos de Alto Rendimiento , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
20.
Arch Microbiol ; 202(4): 825-833, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-31848653

RESUMEN

Continuous observation of wastewater treatment plants is very crucial to keep them safe for proper use and protection from pathogenic contamination. Illumina sequencing technology was used for microbiome structuring from various samples taken from different portions of the wastewater treatment plant, including influent, activated, return sludge and effluent, where different microbial compositions were found. The effluent section was found to have pathogenic microbes such as viruses, Alpha- and deltaproteobacteria, Actinobacteria, Bacteroidetes, clostridia, and bacilli in various concentrations. The presence of viruses, Mycobacterium sp., Mycobacterium fortuitum, bacteroidia, and bacilli was investigated. The species Mycobacterium was found to be higher in quantity in the effluent section. Viruses, including hepatitis A and E, were detected in higher quantity in the effluent part of the sludge in comparison with the influent part of the plant. Our discovery reveals the significance and observation of wastewater treatment plants for the existence of water-borne pathogens in the effluent, principally due to the effect on humans while reusing the water.


Asunto(s)
Fenómenos Fisiológicos Bacterianos , Metagenoma , Microbiota , Fenómenos Fisiológicos de los Virus , Aguas Residuales/microbiología , Bacterias/clasificación , Bacterias/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Aguas del Alcantarillado/microbiología , Virus/clasificación , Virus/genética
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