Búsqueda | Biblioteca Virtual en Salud Odontología. Uruguay

1.

Coupling of mRNA Structure Rearrangement to Ribosome Movement during Bypassing of Non-coding Regions.

Chen, Jin; Coakley, Arthur; O'Connor, Michelle; Petrov, Alexey; O'Leary, Seán E; Atkins, John F; Puglisi, Joseph D.

Cell ; 163(5): 1267-1280, 2015 Nov 19.

Artículo en Inglés | MEDLINE | ID: mdl-26590426

2.

Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding.

Loughran, Gary; Fedorova, Alla D; Khan, Yousuf A; Atkins, John F; Baranov, Pavel V.

Mol Cell ; 82(19): 3745-3749.e2, 2022 10 06.

Artículo en Inglés | MEDLINE | ID: mdl-36115342

3.

Polyamine Control of Translation Elongation Regulates Start Site Selection on Antizyme Inhibitor mRNA via Ribosome Queuing.

Ivanov, Ivaylo P; Shin, Byung-Sik; Loughran, Gary; Tzani, Ioanna; Young-Baird, Sara K; Cao, Chune; Atkins, John F; Dever, Thomas E.

Mol Cell ; 70(2): 254-264.e6, 2018 04 19.

Artículo en Inglés | MEDLINE | ID: mdl-29677493

4.

Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution.

Gaydukova, Sofya A; Moldovan, Mikhail A; Vallesi, Adriana; Heaphy, Stephen M; Atkins, John F; Gelfand, Mikhail S; Baranov, Pavel V.

Proc Natl Acad Sci U S A ; 120(22): e2221683120, 2023 05 30.

Artículo en Inglés | MEDLINE | ID: mdl-37216548

5.

A [Cu]rious Ribosomal Profiling Pattern Leads to the Discovery of Ribosomal Frameshifting in the Synthesis of a Copper Chaperone.

Atkins, John F; Loughran, Gary; Baranov, Pavel V.

Mol Cell ; 65(2): 203-204, 2017 Jan 19.

Artículo en Inglés | MEDLINE | ID: mdl-28107645

6.

Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts.

Loughran, Gary; Li, Xiang; O'Loughlin, Sinead; Atkins, John F; Baranov, Pavel V.

Nucleic Acids Res ; 51(1): 304-314, 2023 01 11.

Artículo en Inglés | MEDLINE | ID: mdl-36533511

7.

No stopping with a short-stem transfer RNA.

Baranov, Pavel V; Atkins, John F.

Nature ; 613(7945): 631-632, 2023 01.

Artículo en Inglés | MEDLINE | ID: mdl-36631582

8.

AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation.

Yordanova, Martina M; Loughran, Gary; Zhdanov, Alexander V; Mariotti, Marco; Kiniry, Stephen J; O'Connor, Patrick B F; Andreev, Dmitry E; Tzani, Ioanna; Saffert, Paul; Michel, Audrey M; Gladyshev, Vadim N; Papkovsky, Dmitry B; Atkins, John F; Baranov, Pavel V.

Nature ; 553(7688): 356-360, 2018 01 18.

Artículo en Inglés | MEDLINE | ID: mdl-29310120

9.

Tissue-specific dynamic codon redefinition in Drosophila.

Hudson, Andrew M; Szabo, Nicholas L; Loughran, Gary; Wills, Norma M; Atkins, John F; Cooley, Lynn.

Proc Natl Acad Sci U S A ; 118(5)2021 02 02.

Artículo en Inglés | MEDLINE | ID: mdl-33500350

10.

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing.

Antonov, Ivan V; O'Loughlin, Sinéad; Gorohovski, Alessandro N; O'Connor, Patrick B F; Baranov, Pavel V; Atkins, John F.

RNA Biol ; 20(1): 926-942, 2023 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-37968863

11.

Immune cells alter genetic decoding in cancer.

Baranov, Pavel V; Atkins, John F.

Nature ; 603(7902): 582-583, 2022 03.

Artículo en Inglés | MEDLINE | ID: mdl-35264802

12.

Evaluating ribosomal frameshifting in CCR5 mRNA decoding.

Khan, Yousuf A; Loughran, Gary; Steckelberg, Anna-Lena; Brown, Katherine; Kiniry, Stephen J; Stewart, Hazel; Baranov, Pavel V; Kieft, Jeffrey S; Firth, Andrew E; Atkins, John F.

Nature ; 604(7906): E16-E23, 2022 04.

Artículo en Inglés | MEDLINE | ID: mdl-35444316

13.

Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF.

Loughran, Gary; Zhdanov, Alexander V; Mikhaylova, Maria S; Rozov, Fedor N; Datskevich, Petr N; Kovalchuk, Sergey I; Serebryakova, Marina V; Kiniry, Stephen J; Michel, Audrey M; O'Connor, Patrick B F; Papkovsky, Dmitri B; Atkins, John F; Baranov, Pavel V; Shatsky, Ivan N; Andreev, Dmitry E.

Proc Natl Acad Sci U S A ; 117(40): 24936-24946, 2020 10 06.

Artículo en Inglés | MEDLINE | ID: mdl-32958672

14.

Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Baranov, Pavel V; Atkins, John F; Yordanova, Martina M.

Nat Rev Genet ; 16(9): 517-29, 2015 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-26260261

15.

Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response.

Loughran, Gary; Jungreis, Irwin; Tzani, Ioanna; Power, Michael; Dmitriev, Ruslan I; Ivanov, Ivaylo P; Kellis, Manolis; Atkins, John F.

J Biol Chem ; 293(12): 4434-4444, 2018 03 23.

Artículo en Inglés | MEDLINE | ID: mdl-29386352

16.

Avoidance of reporter assay distortions from fused dual reporters.

Loughran, Gary; Howard, Michael T; Firth, Andrew E; Atkins, John F.

RNA ; 23(8): 1285-1289, 2017 08.

Artículo en Inglés | MEDLINE | ID: mdl-28442579

17.

Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage.

Penno, Christophe; Kumari, Romika; Baranov, Pavel V; van Sinderen, Douwe; Atkins, John F.

Nucleic Acids Res ; 45(17): 10143-10155, 2017 Sep 29.

Artículo en Inglés | MEDLINE | ID: mdl-28973469

18.

Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis.

Penno, Christophe; Kumari, Romika; Baranov, Pavel V; van Sinderen, Douwe; Atkins, John F.

Nucleic Acids Res ; 45(17): 10156-10167, 2017 Sep 29.

Artículo en Inglés | MEDLINE | ID: mdl-28973470

19.

Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein P.

Mariotti, Marco; Shetty, Sumangala; Baird, Lisa; Wu, Sen; Loughran, Gary; Copeland, Paul R; Atkins, John F; Howard, Michael T.

Nucleic Acids Res ; 45(22): 13004-13015, 2017 Dec 15.

Artículo en Inglés | MEDLINE | ID: mdl-29069514

20.

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Atkins, John F; Loughran, Gary; Bhatt, Pramod R; Firth, Andrew E; Baranov, Pavel V.

Nucleic Acids Res ; 44(15): 7007-78, 2016 09 06.

Artículo en Inglés | MEDLINE | ID: mdl-27436286

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