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1.
Small ; 18(33): e2202661, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35863913

RESUMEN

The family of van der Waals (vdW) materials is large and diverse with applications ranging from electronics and optoelectronics to catalysis and chemical storage. However, despite intensive research, there remains significant knowledge-gaps pertaining to their properties and interactions. One such gap is the interaction between these materials and hydrogen, a potentially vital future energy vector and ubiquitous processing gas in the semiconductor industry. This work reports on the interaction of hydrogen with the vdW semiconductor SnS2 , where molecular hydrogen (H2 ) and H-ions induce a controlled chemical conversion into semiconducting-SnS or to ß-Sn. This hydrogen-driven reaction is facilitated by the different oxidation states of Sn and is successfully applied to form SnS2 /SnS heterostructures with uniform layers, atomically flat interfaces and well-aligned crystallographic axes. This approach is scalable and offers a route for engineering materials at the nanoscale for semiconductor technologies based on the earth-abundant elements Sn and S, a promising result for a wide range of potential applications.

2.
Molecules ; 25(11)2020 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-32481752

RESUMEN

The emergence of the hydrogen economy requires development in the storage, generation and sensing of hydrogen. The indium selenide ( γ -InSe) van der Waals (vdW) crystal shows promise for technologies in all three of these areas. For these applications to be realised, the fundamental interactions of InSe with hydrogen must be understood. Here, we present a comprehensive experimental and theoretical study on the interaction of γ -InSe with hydrogen. It is shown that hydrogenation of γ -InSe by a Kaufman ion source results in a marked quenching of the room temperature photoluminescence signal and a modification of the vibrational modes of γ -InSe, which are modelled by density functional theory simulations. Our experimental and theoretical studies indicate that hydrogen is incorporated into the crystal preferentially in its atomic form. This behaviour is qualitatively different from that observed in other vdW crystals, such as transition metal dichalcogenides, where molecular hydrogen is intercalated in the vdW gaps of the crystal, leading to the formation of "bubbles" for hydrogen storage.


Asunto(s)
Hidrógeno/química , Enlace de Hidrógeno , Indio/química , Microscopía Óptica no Lineal , Teoría Cuántica , Termodinámica
3.
J Am Soc Mass Spectrom ; 19(8): 1230-6, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18565760

RESUMEN

Characterizing chemical changes within individual cells is important for determining fundamental mechanisms of biological processes that will lead to new biological insights and improved disease understanding. Analyzing biological systems with imaging and profiling mass spectrometry (MS) has gained popularity in recent years as a method for creating chemical maps of biological samples. To obtain mass spectra that provide relevant molecular information about individual cells, samples must be prepared so that salts and other cell culture components are removed from the cell surface and that the cell contents are rendered accessible to the desorption beam. We have designed a cellular preparation protocol for imaging/profiling MS that removes the majority of the interfering species derived from the cellular growth medium, preserves the basic morphology of the cells, and allows chemical profiling of the diffusible elements of the cytosol. Using this method, we are able to reproducibly analyze cells from three diverse cell types: MCF7 human breast cancer cells, Madin-Darby canine kidney (MDCK) cells, and NIH/3T3 mouse fibroblasts. This preparation technique makes possible routine imaging/profiling MS analysis of individual cultured cells, allowing for understanding of molecular processes within individual cells.


Asunto(s)
Separación Celular/métodos , Células/química , Animales , Línea Celular Tumoral , Proliferación Celular , Criopreservación , Humanos , Indicadores y Reactivos , Espectrometría de Masas , Reproducibilidad de los Resultados , Soluciones
4.
Cancer Res ; 66(21): 10541-7, 2006 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-17079477

RESUMEN

Epidemiologic evidence indicates that exposure to heterocyclic amines in the diet is an important risk factor for the development of colon cancer. Well-done cooked meats contain significant levels of heterocyclic amines, which have been shown to cause cancer in laboratory animals. To better understand the mechanisms of heterocyclic amine bioactivation in humans, the most mass abundant heterocyclic amine, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), was used to assess the relationship between PhIP metabolism and DNA adduct formation. Ten human volunteers where administered a dietary relevant dose of [(14)C]PhIP 48 to 72 hours before surgery to remove colon tumors. Urine was collected for 24 hours after dosing for metabolite analysis, and DNA was extracted from colon tissue and analyzed by accelerator mass spectrometry for DNA adducts. All 10 subjects were phenotyped for cytochrome P4501A2 (CYP1A2), N-acetyltransferase 2, and sulfotransferase 1A1 enzyme activity. Twelve PhIP metabolites were detected in the urine samples. The most abundant metabolite in all volunteers was N-hydroxy-PhIP-N(2)-glucuronide. Metabolite levels varied significantly between the volunteers. Interindividual differences in colon DNA adducts levels were observed between each individual. The data showed that individuals with a rapid CYP1A2 phenotype and high levels of urinary N-hydroxy-PhIP-N(2)-glucuronide had the lowest level of colon PhIP-DNA adducts. This suggests that glucuronidation plays a significant role in detoxifying N-hydroxy-PhIP. The levels of urinary N-hydroxy-PhIP-N(2)-glucuronide were negatively correlated to colon DNA adduct levels. Although it is difficult to make definite conclusions from a small data set, the results from this pilot study have encouraged further investigations using a much larger study group.


Asunto(s)
Carcinógenos/metabolismo , Colon/metabolismo , Aductos de ADN/orina , Imidazoles/metabolismo , Arilamina N-Acetiltransferasa/fisiología , Arilsulfotransferasa/fisiología , Citocromo P-450 CYP1A2/fisiología , Glucuronosiltransferasa/fisiología , Humanos
5.
Mutat Res ; 616(1-2): 90-4, 2007 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-17161439

RESUMEN

The understanding of mutagenic potency has been primarily approached using "quantitative structure-activity relationships" (QSAR). Often this method allows the prediction of mutagenic potency of the compound based on its structure. But it does not give the underlying reason why the mutagenic activities differ. We have taken a set of heterocyclic amine structures and used molecular dynamic calculations to dock these molecules into the active site of a computational model of the cytochrome P4501A2 enzyme. The calculated binding strength using Boltzman distribution constants was then compared to the QSAR value (HF/6-31G* optimized structures) and the Ames/Salmonella mutagenic potency. Further understanding will only come from knowing the complete set of mutagenic determinants. These include the nitrenium ion half-life, DNA adduct half-life, efficiency of repair of the adduct, and ultimately fixation of the mutation through cellular processes. For two isomers, PhIP and 3-Me-PhIP, we showed that for the 100-fold difference in the mutagenic potency a 5-fold difference can be accounted for by differences in the P450 oxidation. The other factor of 20 is not clearly understood but is downstream from the oxidation step. The application of QSAR (chemical characteristics) to biological principles related to mutagenesis is explored in this report.


Asunto(s)
Aminas/efectos adversos , Alimentos/efectos adversos , Compuestos Heterocíclicos/efectos adversos , Imidazoles/efectos adversos , Mutágenos , Simulación por Computador , Reparación del ADN , Isomerismo , Modelos Biológicos , Estructura Molecular , Relación Estructura-Actividad Cuantitativa
6.
Nutr Rev ; 63(5): 158-65, 2005 May.
Artículo en Inglés | MEDLINE | ID: mdl-15971410

RESUMEN

A group of heterocyclic amines that are mutagens and rodent carcinogens form when meat is cooked to medium and well-done states. The precursors of these compounds are natural meat components: creatinine, amino acids, and sugars. Defined model systems of dry-heated precursors mimic the amounts and proportions of heterocyclic amines found in meat. Results from model systems and cooking experiments suggest ways to reduce their formation and, thus, reduce human intake. Human cancer epidemiology studies related to the consumption of well-done meat products are listed and compared in this review.


Asunto(s)
Aminas/análisis , Carcinógenos/análisis , Compuestos Heterocíclicos/análisis , Carne/análisis , Aminas/efectos adversos , Aminas/química , Carcinógenos/química , Culinaria , Compuestos Heterocíclicos/efectos adversos , Compuestos Heterocíclicos/química , Calor , Humanos , Mutágenos/análisis , Mutágenos/química
7.
Mutat Res ; 570(2): 205-14, 2005 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-15708579

RESUMEN

UDP-glucuronosyltransferase proteins (UGT) catalyze the glucuronidation of both endogenous and xenobiotic compounds. In previous studies, UGT1A1 has been implicated in the detoxification of certain food-borne carcinogenic-heterocyclic amines. To determine the importance of UDP-glucuronosyltransferase 1A1 (UGT1A1) in the biotransformation of the cooked-food carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), genetically modified CHO cells that are nucleotide excision repair-deficient, and express cytochrome P4501A2 (UV5P3 cell line) were transfected with a cDNA plasmid of human UGT1A1 to establish the UDP-glucuronosyltransferase 1A1 expressing 5P3hUGT1A1 cell line. Expression of the UGT1A1 gene was verified by screening neo gene expressing clonal isolates (G-418 resistant) for their sensitivity to cell killing from PhIP exposure. Five of 11 clones were chosen for further analysis due to their resistance to cell killing. Western blot analysis was used to confirm the presence of the UGT1A1 and CYP1A2 proteins. All five clones displayed a 52-kDa protein band, which corresponded to a UGT1A1 control protein. Only four of the clones had a protein band that corresponded to the CYP1A2 control protein. Correct fragment size of the cDNAs in the remaining four clones was confirmed by RT-PCR and quantification of the mRNA product was accomplished by real-time RT-PCR. Expression of UGT1A1 in the transfected cells was 10(4)-10(5)-fold higher relative to the UV5P3 parental cells. One clone (#14) had a 10-fold higher increase in expression at 1.47 x 10(5) over the other three clones. This clone was also the most active in converting N-hydroxy-PhIP to N-hydroxy-PhIP glucuronide conjugates in microsomal metabolism assays. Based on the D50 values, the cytotoxic effect of PhIP was decreased approximately 350-fold in the 5P3hUGT1A1 cells compared to the UV5P3 control cells. In addition, no significant increase in mutation frequency was observed in the transfected cells. These results clearly indicate that UGT1A1 plays a critical role in PhIP biotransformation, providing protection against PhIP-mediated cytotoxicity and mutagenicity.


Asunto(s)
Carcinógenos/toxicidad , Glucuronosiltransferasa/metabolismo , Imidazoles/toxicidad , Mutágenos/toxicidad , Animales , Western Blotting , Células CHO , Carcinógenos/metabolismo , Cromatografía Líquida de Alta Presión , Cricetinae , ADN Complementario , Electroforesis en Gel de Agar , Glucuronosiltransferasa/genética , Imidazoles/metabolismo , Mutagénesis , Mutágenos/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
8.
Environ Mol Mutagen ; 41(1): 7-13, 2003.
Artículo en Inglés | MEDLINE | ID: mdl-12552587

RESUMEN

In order to understand the role of repair and metabolism in the mutagenicity of heterocyclic amines from cooked foods, we previously developed the nucleotide excision repair-deficient CHO 5P3NAT2 cell line engineered to coexpress the mouse CYP1A2 and human N-acetyltransferase genes. In the present study, we have made a matched repair-competent cell line by mutagenizing 5P3NAT2 cells with ethyl methanesulfonate and selecting for resistance to cytotoxicity by 2-amino-3-methylimidazo[4,5-f]quinoline (IQ). In the differential cytotoxicity (DC) assay, 4 out of 15 clones showed no cytotoxic effect with IQ at the highest dose (30 microg/ml) tested, in contrast to repair-deficient 5P3NAT2 cells, which showed approximately 100% cytotoxicity at 0.3 microg/ml. Subsequently, these IQ-resistant clones were examined for resistance to killing by UV irradiation. All four IQ-resistant clones, which show resistance to UV similar to that of repair-proficient AA8 cells, still express both the CYP1A2 and N-acetyltransferase genes. Sequence analysis of CXPD cDNA from the 5P3NAT2R9 clone revealed an A:T-->G:C reversion event at the site of the UV5 mutation. This base change results in reversion of the codon 116 tyrosine in UV5 cells back to the original cysteine in AA8 cells, thereby restoring wild-type CXPD activity and repair function. In contrast to 5P3NAT2 cells, the repair-proficient 5P3NAT2R9 revertant cell line shows little IQ-induced cell killing, and dramatically lower levels of induced mutation at the adenine phosphoribosyltransferase (Aprt) gene locus over the range of 2-40 microg/ml IQ. This matched pair of repair-proficient/deficient cell lines can provide insight not only into the genotoxicity of heterocyclic amine dietary carcinogens such as IQ and PhIP, but also into the effects of nucleotide excision repair on the ultimate mutagenicity of these compounds.


Asunto(s)
Aminas/metabolismo , Células CHO/fisiología , Reparación del ADN/fisiología , Alimentos , Compuestos Heterocíclicos/metabolismo , Pruebas de Mutagenicidad/métodos , Aminas/toxicidad , Animales , Arilamina N-Acetiltransferasa/genética , Arilamina N-Acetiltransferasa/metabolismo , Células CHO/efectos de los fármacos , Células CHO/efectos de la radiación , Muerte Celular/efectos de los fármacos , Muerte Celular/genética , Línea Celular/efectos de los fármacos , Línea Celular/efectos de la radiación , Culinaria , Cricetinae , Citocromo P-450 CYP1A2/genética , Citocromo P-450 CYP1A2/metabolismo , Metanosulfonato de Etilo/toxicidad , Compuestos Heterocíclicos/toxicidad , Mutágenos/toxicidad , Quinolinas/metabolismo , Quinolinas/toxicidad , Análisis de Secuencia de ADN
9.
Environ Mol Mutagen ; 39(2-3): 112-8, 2002.
Artículo en Inglés | MEDLINE | ID: mdl-11921178

RESUMEN

Heterocyclic amines produced from overcooked foods are extremely mutagenic in numerous in vitro and in vivo test systems. One of these mutagens, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), induces breast tumors in rats and has been implicated in dietary epidemiology studies as raising the risk of breast cancer in humans. Efforts in our laboratory and others have centered on defining the exposure to PhIP and other dietary mutagens derived from cooked food. We accomplish this by analyzing the foods with a series of solid-phase extractions and HPLC. We have developed an LC/MS/MS method to analyze the four major human PhIP metabolites (sulfates and glucuronides) following a single meal containing 27 microg of cooking-produced PhIP in 200 g of grilled meat. Although the intake of PhIP was similar for each of eight women, the total amount excreted in the urine and the metabolite profiles differed among the subjects. It appears that adsorption (digestion) from the meat matrix, other foods in the diet, and genetic differences in metabolism may contribute to the variation. The four major metabolites that can be routinely assayed in the urine are N(2)-OH-PhIP-N(2)-glucuronide, PhIP-N(2)-glucuronide, 4'-PhIP-glucuronide, and N(2)-OH-PhIP-N3-glucuronide. This work is suited to investigate individual exposure and risk, especially for breast cancer, from these potent dietary mutagens.


Asunto(s)
Neoplasias de la Mama/inducido químicamente , Carcinógenos/efectos adversos , Imidazoles/efectos adversos , Mutágenos/efectos adversos , Aminas/efectos adversos , Aminas/análisis , Animales , Culinaria , Femenino , Análisis de los Alimentos , Glucurónidos/orina , Compuestos Heterocíclicos/efectos adversos , Compuestos Heterocíclicos/análisis , Humanos , Carne/análisis , Ratas
10.
Toxicology ; 198(1-3): 135-45, 2004 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-15138037

RESUMEN

Carcinogenic heterocyclic amines are produced from overcooked foods and are highly mutagenic in most short-term test systems. One of the most abundant of these amines, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), induces breast, colon and prostate tumors in rats. Human dietary epidemiology studies suggest a strong correlation between either meat consumption or well-done muscle meat consumption and cancers of the colon, breast, stomach, lung and esophagus. For over 20 years our laboratory has helped define the human exposure to these dietary carcinogens. In this report we describe how various environmental exposures may modulate the risk from exposure to heterocyclic amines, especially PhIP. To assess the impact of foods on PhIP metabolism in humans, we developed an LC/MS/MS method to analyze the four major PhIP urinary metabolites following the consumption of a single portion of grilled chicken. Adding broccoli to the volunteers' diet altered the kinetics of PhIP metabolism. At the cellular level we have found that PhIP itself stimulates a significant estrogenic response in MCF-7 cells, but even more interestingly, co-incubation of the cells with herbal teas appear to enhance the response. Numerous environmental chemicals found in food or the atmosphere can impact the exposure, metabolism, and cell proliferation response of heterocyclic amines.


Asunto(s)
Carcinógenos , Culinaria , Exposición a Riesgos Ambientales , Compuestos Heterocíclicos , Imidazoles , Carne , Microsomas Hepáticos/metabolismo , Animales , Brassica , Carcinógenos/efectos adversos , Carcinógenos/antagonistas & inhibidores , Carcinógenos/metabolismo , Bovinos , Pollos , Compuestos Heterocíclicos/efectos adversos , Compuestos Heterocíclicos/antagonistas & inhibidores , Compuestos Heterocíclicos/metabolismo , Humanos , Imidazoles/efectos adversos , Imidazoles/antagonistas & inhibidores , Imidazoles/metabolismo ,
11.
Mutat Res ; 506-507: 1-8, 2002 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-12351139

RESUMEN

Research in the 20th century initially identified arylamines as causative factors in occupational carcinogenesis, especially bladder cancer, and subsequently identified arylamines as a major class of mutagens/carcinogens in the environment and diet that are potential risk factors in a variety of human cancers. Current research focuses on understanding of mechanisms of arylamine carcinogenesis, such as the role of metabolic processing, DNA adduct formation, and mutagenesis, and learning more about the molecular alterations in carcinomas induced by these compounds. Furthermore, research to identify human exposures, including developing more sensitive methods for analyzing environmental samples and identifying suitable biomarkers are important aspects of contemporary investigations. In addition, better evaluation of the risk of these compounds in human cancer especially with regard to the impact of genetic polymorphisms is a major focus of research in this field. Although current population studies have sometimes been described as equivocal, improved tools for epidemiology, refined human biomonitoring methods and collaborative endeavors to study multiple population groups now provide a better means to ultimately define the role of arylamines in human carcinogenesis. The purpose of the Eighth International Conference on Carcinogenic/Mutagenic N-Substituted Aryl Compounds, held in Washington, DC, 12-14 November 2001, was to explore the current scope of studies on arylamine carcinogenesis among scientists in basic research and epidemiology and to discuss future research priorities. With the intent of providing a view to the current field of research on aromatic amines, this review presents a synopsis of the Proceedings of the Eighth International Conference and highlights the manuscripts contained in this special issue of Mutation Research.


Asunto(s)
Compuestos de Aminobifenilo/efectos adversos , Carcinógenos Ambientales/efectos adversos , Carcinógenos/efectos adversos , Mutágenos/efectos adversos , Neoplasias/inducido químicamente , Aductos de ADN/análisis , Daño del ADN , ADN de Neoplasias/genética , Dieta , Monitoreo del Ambiente , Humanos , Neoplasias/genética , Factores de Riesgo
12.
Mutat Res ; 539(1-2): 195-201, 2003 Aug 05.
Artículo en Inglés | MEDLINE | ID: mdl-12948828

RESUMEN

Twenty-five commercial pet foods were analyzed for mutagenic activity using the Ames/Salmonella test with strain TA98 and added metabolic activation. All but one gave a positive mutagenic response. Fourteen of these samples were analyzed for heterocyclic amine mutagens/carcinogens and all but one contained 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx) and 10 of 14 contained 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) as analyzed by HPLC and confirmed by photodiode array peak matching. From these findings it is hypothesized that there is a connection between dietary heterocyclic amines and cancer in animals consuming these foods.


Asunto(s)
Aminas/análisis , Animales Domésticos , Carcinógenos , Compuestos Heterocíclicos/análisis , Mutágenos , Animales , Análisis de los Alimentos , Imidazoles/análisis , Pruebas de Mutagenicidad , Quinoxalinas/análisis , Salmonella typhimurium/efectos de los fármacos , Salmonella typhimurium/genética
13.
Mutat Res ; 506-507: 153-62, 2002 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-12351155

RESUMEN

We are working to understand possible human health effects from exposure to heterocyclic amines that are formed in meat during cooking. Laboratory-cooked beef, pork, and chicken are capable of producing tens of nanograms of MeIQx, IFP, and PhIP per gram of meat and smaller amounts of other heteroyclic amines. Well-done restaurant-cooked beef, pork, and chicken may contain PhIP and IFP at concentrations as high as tens of nanograms per gram and MeIQx at levels up to 3 ng/g. Although well-done chicken breast prepared in the laboratory may contain large amounts of PhIP, a survey of flame-grilled meat samples cooked in private homes showed PhIP levels in beef steak and chicken breast are not significantly different (P=0.36). The extremely high PhIP levels reported in some studies of grilled chicken are not seen in home-cooked samples.Many studies suggest individuals may have varying susceptibility to carcinogens and that diet may influence metabolism, thus affecting cancer susceptibility. To understand the human metabolism of PhIP, we examined urinary metabolites of PhIP in volunteers following a single well-done meat exposure. Using solid-phase extraction and LC/MS/MS, we quantified four major PhIP metabolites in human urine. In addition to investigating individual variation, we examined the interaction of PhIP with a potentially chemopreventive food. In a preliminary study of the effect of broccoli on PhIP metabolism, we fed chicken to six volunteers before and after eating steamed broccoli daily for 3 days. Preliminary results suggest that broccoli, which contains isothiocyanates shown to induce Phases I and II metabolism in vitro, may affect both the rate of metabolite excretion and the metabolic products of a dietary carcinogen. This newly developed methodology will allow us to assess prevention strategies that reduce the possible risks associated with PhIP exposure.


Asunto(s)
Carcinógenos/metabolismo , Imidazoles/metabolismo , Imidazoles/orina , Carne , Aminas/administración & dosificación , Animales , Pollos , Cromatografía Liquida , Culinaria , Compuestos Heterocíclicos/administración & dosificación , Humanos , Mutágenos/metabolismo , Piridinas/orina , Quinolinas/orina
14.
Food Chem Toxicol ; 41(12): 1701-10, 2003 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-14563395

RESUMEN

To understand the impact of variation in digestion parameters on the release of heterocyclic amines naturally formed during cooking, we developed and characterized a model system to assess the effect of amylase, pepsin, and pancreatin on digestion of well-done chicken. The amounts of MeIQx, DiMeIQx, IFP, and PhIP in the liquid portion of the digestate were compared to levels in the undigested meat to determine the percentage released (accessible fraction). Incubating the meat with amylase and pepsin did not change the accessibility of HAs when compared to incubation with water alone. In contrast, increasing amounts of pancreatin increased the accessibility up to 6.4-fold. Comparing the amounts of the HAs in the liquid to the solid fraction showed that there was more MeIQx, DiMeIQx, and IFP in the liquid fraction. In contrast, PhIP was equally divided between the solid and liquid fractions. For all four compounds, increasing the doneness of the meat decreased the amount of the compound accessible from the meat matrix. Our data suggest that bioaccessability of HAs may vary according to the polarity of the individual HAs and also may depend upon the doneness of the meat. These results may have important ramifications for human feeding studies, which assume that the total amount of each HA in the meat matrix is equally bioavailable.


Asunto(s)
Carcinógenos/química , Carcinógenos/farmacocinética , Pollos/metabolismo , Culinaria , Digestión/fisiología , Compuestos Heterocíclicos/química , Compuestos Heterocíclicos/farmacocinética , Carne/análisis , Animales , Disponibilidad Biológica , Cromatografía Líquida de Alta Presión , Mucosa Gástrica/metabolismo , Concentración de Iones de Hidrógeno , Modelos Biológicos , Tamaño de la Partícula , Reproducibilidad de los Resultados , Espectrometría de Fluorescencia , Espectrofotometría Ultravioleta
15.
Methods Mol Biol ; 656: 267-81, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20680597

RESUMEN

Time-of-flight secondary ion mass spectrometry (ToF-SIMS) has proven to be an extremely powerful tool for characterizing chemical distributions within biological cells and tissues. However, differentiating biological samples, e.g., cancerous cells from their normal counterparts or benign tissues from malignant tissues, presents unique challenges to ToF-SIMS. Repeatable differentiation of such samples, especially formalin-fixed paraffin-embedded (FFPE) histological specimens, could be used to improve tissue-based diagnosis and aid in prognosis decisions. In this chapter, we describe a strategy for characterizing and differentiating FFPE tissues. ToF-SIMS was used to image deparaffinized FFPE mouse embryos and differentiate tissue types. The robustness and repeatability of the method was determined by analyzing ten tissue slices from three different embryos over a period of 1 month. Using principal component analysis (PCA) to reduce the spectral data generated by ToF-SIMS, histopathologically identified tissue types of the mouse embryos can be differentiated based on the characteristic differences in their mass spectra.


Asunto(s)
Diagnóstico por Imagen/métodos , Espectrometría de Masa de Ion Secundario/métodos , Animales , Diferenciación Celular/fisiología , Embrión de Mamíferos/citología , Femenino , Ratones , Ratones Endogámicos C57BL , Análisis de Componente Principal
16.
Biomed Inform Insights ; 3: 1-10, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20798791

RESUMEN

MOTIVATION: Whole genome microarrays are increasingly becoming the method of choice to study responses in model organisms to disease, stressors or other stimuli. However, whole genome sequences are available for only some model organisms, and there are still many species whose genome sequences are not yet available. Cross-species studies, where arrays developed for one species are used to study gene expression in a closely related species, have been used to address this gap, with some promising results. Current analytical methods have included filtration of some probes or genes that showed low hybridization activities. But consensus filtration schemes are still not available. RESULTS: A novel masking procedure is proposed based on currently available target species sequences to filter out probes and study a cross-species data set using this masking procedure and gene-set analysis. Gene-set analysis evaluates the association of some priori defined gene groups with a phenotype of interest. Two methods, Gene Set Enrichment Analysis (GSEA) and Test of Test Statistics (ToTS) were investigated. The results showed that masking procedure together with ToTS method worked well in our data set. The results from an alternative way to study cross-species hybridization experiments without masking are also presented. We hypothesize that the multi-probes structure of Affymetrix microarrays makes it possible to aggregate the effects of both well-hybridized and poorly-hybridized probes to study a group of genes. The principles of gene-set analysis were applied to the probe-level data instead of gene-level data. The results showed that ToTS can give valuable information and thus can be used as a powerful technique for analyzing cross-species hybridization experiments. AVAILABILITY: Software in the form of R code is available at http://anson.ucdavis.edu/~ychen/cross-species.html. SUPPLEMENTARY DATA: Supplementary data are available at http://anson.ucdavis.edu/~ychen/cross-species.html.

17.
Chem Res Toxicol ; 20(3): 531-42, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17279779

RESUMEN

2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) is a potent rodent carcinogen and a potential human carcinogen because of its existence in the normal human diet. N2-OH-PhIP, a major PhIP metabolite, has been identified as a precursor of genotoxic species. In vitro data supported the view that CYP1A2 is the major enzyme responsible for the formation of N2-OH-PhIP. However, disruption of the CYP1A2 gene in mouse failed to inhibit PhIP-induced carcinogenesis. To investigate the mechanism underlying this observation, the metabolism of PhIP in wild-type, Cyp1a2-null, and CYP1A2-humanized mice was examined in detail using a metabolomic approach. Following data acquisition in a high-resolution LC-MS system, urinary metabolomes of the control and PhIP-treated mice were characterized in a principal component analysis (PCA) model. Comprehensive metabolite profiles of PhIP in high dose (10 mg/kg) and low dose (100 microg/kg) were established through analyzing urinary ions contributing to the separation of three mouse lines in the multivariate model and by measuring radiolabled PhIP metabolite in a radio-HPLC assay, respectively. The genotoxicity of PhIP to three mouse lines was evaluated by measuring DNA adduction levels in liver, lung, colon, and mammary gland. On the basis of the chemical identities of 17 urinary PhIP metabolites, including eight novel metabolites, multivariate data analysis revealed the role of CYP1A2 in PhIP metabolism and a human-mouse interspecies difference in the catalytic activity of CYP1A2. In addition, the results also showed that Cyp1a2-null mice still possess significant N2-hydroxylation and DNA adduction activities, which may be partially attributed to mouse CYP2C enzymes according to the results from in vitro microsome and Supersome incubations and antibody inhibition experiments.


Asunto(s)
Carcinógenos/metabolismo , Imidazoles/metabolismo , Animales , Biotransformación/fisiología , Citocromo P-450 CYP1A2/genética , Citocromo P-450 CYP1A2/metabolismo , ADN/biosíntesis , ADN/genética , Aductos de ADN/genética , Humanos , Indicadores y Reactivos , Isoenzimas/metabolismo , Ratones , Ratones Noqueados , Microsomas Hepáticos/efectos de los fármacos , Microsomas Hepáticos/metabolismo , Análisis Multivariante , Análisis de Componente Principal , Distribución Tisular
18.
Chem Res Toxicol ; 20(3): 520-30, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17316027

RESUMEN

A previously unknown isomer of the carcinogenic heterocyclic aromatic amine (HAA) 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (8-MeIQx) was recently discovered in the urine of meat eaters and subsequently detected in cooked ground beef (Holland, R.D., et al. (2004) Chem. Res. Toxicol. 17, 1121-1136). In this current investigation, the identity of the analyte was determined through a comparison of its chromatographic tR by HPLC and through UV and mass spectral comparisons to the synthesized isomers of 8-MeIQx. Angular tricyclic isomers of 8-MeIQx were excluded as potential structures of the newly discovered HAA, on the basis of dissimilar tR and product ion mass spectral data. The linear tricyclic isomers 2-amino-1,6-dimethylimidazo[4,5-g]quinoxaline (6-MeIgQx) and 2-amino-1,7-dimethylimidazo[4,5-g]quinoxaline (7-MeIgQx) were postulated as plausible structures. Both compounds were synthesized from 4-fluoro-5-nitro-benzene-1,2-diamine in five steps. The structure of the analyte was proven to be 7-MeIgQx, on the basis of co-injection of the compound with the synthetic isomers, and corroborated by comparisons of the UV and mass spectral data of the analyte and MeIgQx isomers. 7-MeIgQx induced 348 revertants/microg in the S. typhimurium tester strain YG1024, when liver S-9 homogenate of rats pretreated with polychlorinated biphenyls (PCBs) was used for bioactivation. This newly discovered 7-MeIgQx molecule is one of the most abundant HAAs formed in cooked ground beef patties and pan-fried scrapings. The human health risk of 7-MeIgQx requires investigation.


Asunto(s)
Culinaria , Compuestos Heterocíclicos/análisis , Compuestos Heterocíclicos/toxicidad , Carne/análisis , Mutágenos/análisis , Mutágenos/toxicidad , Quinoxalinas/análisis , Quinoxalinas/toxicidad , Animales , Bovinos , Cromatografía Líquida de Alta Presión , Compuestos Heterocíclicos/síntesis química , Indicadores y Reactivos , Espectrometría de Masas , Pruebas de Mutagenicidad , Quinoxalinas/síntesis química , Salmonella typhimurium/efectos de los fármacos , Salmonella typhimurium/genética , Espectrometría de Masa por Ionización de Electrospray , Espectrofotometría Ultravioleta
19.
Carcinogenesis ; 28(3): 732-7, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17052995

RESUMEN

2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) carcinogenesis is initiated by N(2)-hydroxylation, mediated by several cytochromes P450, including CYP1A1. However, the role of CYP1A1 in PhIP metabolic activation in vivo is unclear. In this study, Cyp1a1-null and wild-type (WT) mice were used to investigate the potential role of CYP1A1 in PhIP metabolic activation in vivo. PhIP N(2)-hydroxylation was actively catalyzed by lung homogenates of WT mice, at a rate of 14.9 +/- 5.0 pmol/min/g tissue, but <1 pmol/min/g tissue in stomach and small intestine, and almost undetectable in mammary gland and colon. PhIP N(2)-hydroxylation catalyzed by lung homogenates of Cyp1a1-null mice was approximately 10-fold lower than that of WT mice. In contrast, PhIP N(2)-hydroxylation activity in lung homogenates of Cyp1a2-null versus WT mice was not decreased. Pretreatment with 2,3,7,8-tetrachlorodibenzo-p-dioxin increased lung Cyp1a1 mRNA and lung homogenate PhIP N(2)-hydroxylase activity approximately 50-fold in WT mice, where the activity was substantially inhibited (70%) by monoclonal antibodies against CYP1A1. In vivo, 30 min after oral treatment with PhIP, PhIP levels in lung were similar to those in liver. After a single dose of 0.1 mg/kg [(14)C]PhIP, lung PhIP-DNA adduct levels in Cyp1a1-null mice, but not in Cyp1a2-null mice, were significantly lower (P = 0.0028) than in WT mice. These results reveal that mouse lung has basal and inducible PhIP N(2)-hydroxylase activity predominantly catalyzed by CYP1A1. Because of the high inducibility of human CYP1A1, especially in cigarette smokers, the role of lung CYP1A1 in PhIP carcinogenesis should be considered. (237 words).


Asunto(s)
Carcinógenos/metabolismo , Citocromo P-450 CYP1A1/metabolismo , Imidazoles/metabolismo , Pulmón/enzimología , Animales , Citocromo P-450 CYP1A1/deficiencia , Citocromo P-450 CYP1A1/genética , Activación Enzimática , Femenino , Imidazoles/farmacocinética , Ratones , Ratones Noqueados , Distribución Tisular
20.
Carcinogenesis ; 27(12): 2367-70, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17082177

RESUMEN

Cooking foods clearly has a beneficial impact for humans; the microbial content can be decreased, proteins made more digestible and the flavor and texture improved. But at the same time, amino acids, creatine and sugars, which occur naturally in meats, may be involved in reactions that generate heterocyclic amine (HA) carcinogens during cooking. Recently, another amine carcinogen, acrylamide, was found at relatively high levels in cooked carbohydrate-rich foods, especially potatoes. In this commentary acrylamide will be compared with the meat carcinogens (HAs) with respect to formation, human intake and health consequences--it's a meat and potato war. What conclusion about risks from these dietary carcinogens can we make from the available scientific data?


Asunto(s)
Culinaria , Dieta , Grasas de la Dieta , Carne , Neoplasias/epidemiología , Ingestión de Energía , Humanos , Neoplasias/prevención & control
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