ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana.

ACYL-CoA-BINDING PROTEINs (ACBPs) play crucial regulatory roles during plant response to hypoxia, but their molecular mechanisms remain poorly understood. Our study reveals that ACBP4 serves as a positive regulator of the plant hypoxia response by interacting with WRKY70, influencing its nucleocytoplasmic shuttling in Arabidopsis thaliana. Furthermore, we demonstrate the direct binding of WRKY70 to the ACBP4 promoter, resulting in its upregulation and suggesting a positive feedback loop. Additionally, we pinpointed a phosphorylation site at Ser638 of ACBP4, which enhances submergence tolerance, potentially by facilitating WRKY70's nuclear shuttling. Surprisingly, a natural variation in this phosphorylation site of ACBP4 allowed A. thaliana to adapt to humid conditions during its historical demographic expansion. We further observed that both phosphorylated ACBP4 and oleoyl-CoA can impede the interaction between ACBP4 and WRKY70, thus promoting WRKY70's nuclear translocation. Finally, we found that the overexpression of orthologous BnaC5.ACBP4 and BnaA7.WRKY70 in Brassica napus increases submergence tolerance, indicating their functional similarity across genera. In summary, our research not only sheds light on the functional significance of the ACBP4 gene in hypoxia response, but also underscores its potential utility in breeding flooding-tolerant oilseed rape varieties.

First Report of Root rot Caused by Mucor circinelloides on Fructus forsythiae in Hubei，China.

Fructus forsythiae is a typical traditional Chinese medicinal herb with antibacterial and anti-inflammatory effects. Surveys for root rot of F. forsythiae were conducted from 2021 to 2022 in China's major planting areas (Daweiyuan Village, Sanguandong Forest Area, Yunxi County, Shiyan City, Hubei Province, 32°52'52"N, 110°19'29"E). The disease has occurred in several plantations. A total of 200 F. forsythiae were investigated, among which 112 were diseased, the incidence rate was more than 50%, and all the plants in the plantation were over 3 years old. The roots of diseased plants were fully covered by white mycelia. When the disease was severe, leaves curled and fell, roots withered, and some eventually died. A total of 22 isolates were isolated from the 18 infected tissues of F. forsythiae and purified by single spore cultures on PDA medium. The 22 isolates similared in morphology to isolate Lianmao (The name is one of the five sequenced samples in the lab) were selected to be representative of the group. The results showed that these samples belonged to the same pathogen. The isolates were characterized by yellowish colonies composed of tall and short sporangiophores 6 to 11 µm in width, terminal and globose sporangia, ellipsoidal sporangiospores with dimensions of 5 to 8 µm in length and 4 to 5 µm in width, and obovoid columellae. It was identified as Mucor circinelloides, based on morphological characteristics (Schipper 1976). The ITS and LSU sequences of the fungus were amplified, and sequenced with the primers ITS1/ITS4 and LROR/LR5 (White et al. 1990; Rehner et al. 1994). Sequences from isolate Lianmao were deposited in GenBank (accession nos. OQ359158 for ITS, OQ359157 for LSU). Analysis using the BLAST algorithm of the two amplified sequences showed 99.69 to 100% similarity with the sequences (KY933391 and MH868051) of M. circinelloides. The isolated M. circinelloides was prepared into 150ml spore suspension (The method was to filter the PDB after 10 days of culture using gauze to get spore suspension. Then the concentration of spore suspension was diluted to 1.0×106 spores/ml using sterile water). The spore suspension was subsequently inoculated into healthy potted F. forsythiae plants. Uninoculated potted F. forsythiae plants served as controls. All the potted F. forsythiae plants were incubated at 25°C under 12h light and 12h dark conditions. The symptoms of the infected plants were similar to those observed in the field; The control plants were symptomless. The pathogen reisolated from symptomatic roots and morphologically identified as M. circinelloides. M. circinelloides has been reported as a pathogen of Morinda citrifolia, Aconitum carmichaelii and so on (Cui et al. 2021; Nishijima et al. 2011), but it has never been reported on F. forsythiae before. This is the first report of root rot caused by M.circinelloides on F. forsythiae. This pathogen may present a threat to the production of F. forsythiae in China.

Optimization of Constitutive Promoters Using a Promoter-Trapping Vector in Burkholderia pyrrocinia JK-SH007.

Selecting suitable promoters to drive gene overexpression can provide significant insight into the development of engineered bacteria. In this study, we analyzed the transcriptome data of Burkholderia pyrrocinia JK-SH007 and identified 54 highly expressed genes. The promoter sequences were located using genome-wide data and scored using the prokaryotic promoter prediction software BPROM to further screen out 18 promoter sequences. We also developed a promoter trap system based on two reporter proteins adapted for promoter optimization in B. pyrrocinia JK-SH007: firefly luciferase encoded by the luciferase gene set (Luc) and trimethoprim (TP)-resistant dihydrofolate reductase (TPr). Ultimately, eight constitutive promoters were successfully inserted into the probe vector and transformed into B. pyrrocinia JK-SH007. The transformants were successfully grown on Tp antibiotic plates, and firefly luciferase expression was determined by measuring the relative light unit (RLU). Five of the promoters (P4, P9, P10, P14, and P19) showed 1.01-2.51-fold higher activity than the control promoter λ phage transcriptional promoter (PRPL). The promoter activity was further validated via qPCR analysis, indicating that promoters P14 and P19 showed stable high transcription levels at all time points. Then, GFP and RFP proteins were overexpressed in JK-SH007. In addition, promoters P14 and P19 were successfully used to drive gene expression in Burkholderia multivorans WS-FJ9 and Escherichia coli S17-1. The two constitutive promoters can be used not only in B. pyrrocinia JK-SH007 itself to gene overexpression but also to expand the scope of application.

Across two phylogeographic breaks: Quaternary evolutionary history of a mountain aspen (Populus rotundifolia) in the Hengduan Mountains.

Biogeographical barriers to gene flow are central to plant phylogeography. In East Asia, plant distribution is greatly influenced by two phylogeographic breaks, the Mekong-Salween Divide and Tanaka-Kaiyong Line, however, few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both. Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia, a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong Line in southwestern China. Demographic and migration hypotheses were tested using coalescent-based approaches. Limited historical gene flow was observed between the western and eastern groups of P. rotundifolia, but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong Line, manifesting in clear admixture and high genetic diversity in the central group. Wind-borne pollen and seeds may have facilitated the dispersal of P. rotundifolia following prevalent northwest winds in the spring. We also found that the Hengduan Mountains, where multiple genetic barriers were detected, acted on the whole as a barrier between the western and eastern groups of P. rotundifolia. Ecological niche modeling suggested that P. rotundifolia has undergone range expansion since the last glacial maximum, and demographic reconstruction indicated an earlier population expansion around 600 Ka. The phylogeographic pattern of P. rotundifolia reflects the interplay of biological traits, wind patterns, barriers, niche differentiation, and Quaternary climate history. This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas.

Rice Bran Phenolic Extract Confers Protective Effects against Alcoholic Liver Disease in Mice by Alleviating Mitochondrial Dysfunction via the PGC-1α-TFAM Pathway Mediated by microRNA-494-3p.

The initiation and development of alcoholic liver disease (ALD) is mediated, at least partly, by mitochondria dysfunction, which is regulated by PPARγ coactivator-1α (PGC-1α) via mitochondria transcription factor A (TFAM). Then, PGC-1α expression was regulated by several microRNAs. This research investigated the hepatoprotective effects of the rice bran phenolic extract (RBPE) on mice fed with an ethanol-containing diet via the microRNAs-PGC-1α-TFAM signal pathway. RBPE treatment protected against alcoholic liver injury, as indicated by decreased serum aminotransferase activities and hepatic triglyceride accumulation, together with alleviated oxidative stress in serum and the liver. RBPE treatment alleviated ethanol-induced mitochondrial dysfunction through altering the membrane potential, mtDNA content, and respiratory chain complex enzyme activities in mitochondria, resulting in increased hepatic ATP production. Decreased cytoplasmic cytochrome c contents, caspase-3 activity, and Bax/Bcl-2 ratio were detected in the liver of RBPE-treated mice, indicating that the RBPE might inhibit ethanol-induced hepatocellular apoptosis. Furthermore, ethanol-induced decreases in the mRNA and protein expression of PGC-1α and TFAM were remarkably alleviated in RBPE-treated mice. RBPE treatment to ethanol-fed mice could also downregulate the expression of microRNA-494-3p, which regulates PGC-1α expression directly. Therefore, the RBPE might exert protection against ALD by alleviating mitochondrial dysfunction and the resulting hepatocyte apoptosis via the PGC-1α-TFAM signal pathway mediated by microRNA-494-3p.