Microbial traits determine soil C emission in response to fresh carbon inputs in forests across biomes.

Soil priming is a microbial-driven process, which determines key soil-climate feedbacks in response to fresh carbon inputs. Despite its importance, the microbial traits behind this process are largely undetermined. Knowledge of the role of these traits is integral to advance our understanding of how soil microbes regulate carbon (C) emissions in forests, which support the largest soil carbon stocks globally. Using metagenomic sequencing and 13 C-glucose, we provide unprecedented evidence that microbial traits explain a unique portion of the variation in soil priming across forest biomes from tropical to cold temperature regions. We show that microbial functional profiles associated with the degradation of labile C, especially rapid simple sugar metabolism, drive soil priming in different forests. Genes involved in the degradation of lignin and aromatic compounds were negatively associated with priming effects in temperate forests, whereas the highest level of soil priming was associated with ß-glucosidase genes in tropical/subtropical forests. Moreover, we reconstructed, for the first time, 42 whole bacterial genomes associated with the soil priming effect and found that these organisms support important gene machinery involved in priming effect. Collectively, our work demonstrates the importance of microbial traits to explain soil priming across forest biomes and suggests that rapid carbon metabolism is responsible for priming effects in forests. This knowledge is important because it advances our understanding on the microbial mechanisms mediating soil-climate feedbacks at a continental scale.

Responses of particulate and mineral-associated organic carbon to temperature changes and their mineral protection mechanisms: A soil translocation experiment.

Mineral protection mechanisms are important in determining the response of particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) to temperature changes. However, the underlying mechanisms for how POC and MAOC respond to temperature changes are remain unclear. By translocating soils across 1304 m, 1425 m and 2202 m elevation gradient in a temperate forest, simulate nine months of warming (with soil temperature change of +1.41 °C and +3.91 °C) and cooling (with soil temperature change of -1.86 °C and -4.20 °C), we found that warming translocation significantly decreased POC by an average of 10.84 %, but increased MAOC by an average of 4.25 %. Conversely, cooling translocation led to an average increase of 8.64 % in POC and 13.48 % in MAOC. Exchangeable calcium (Caexe) had a significant positive correlation with POC and MAOC during temperature changes, and Fe/Al-(hydr)oxides had no significant correlation or a significant negative correlation with POC and MAOC. Our results showed that POC was more sensitive than MAOC to temperature changes. Caexe mediated the stability of POC and MAOC under temperature changes, and Fe/Al-(hydr)oxides had no obvious protective effect on POC and MAOC. Our results support the role of mineral protection in the stabilization mechanism of POC and MAOC in response to climate change and are critical for understanding the consequences of global change on soil organic carbon (SOC) dynamics.

Antarctic Soils Select Copiotroph-Dominated Bacteria.

The life strategies of bacterial communities determine their structure and function and are an important driver of biogeochemical cycling. However, the variations in these strategies under different soil resource conditions remain largely unknown. We explored the bacterial life strategies and changes in structure and functions between Antarctic soils and forest (temperate, subtropical, and tropical) soils. The results showed that the weighted mean rRNA operon copy number in temperate soils was 19.5% lower than that in Antarctic soils, whereas no significant differences were observed among Antarctic, subtropical, and tropical soils. An unexpected result was that bacterial communities in Antarctic soils tended to be copiotrophs, such as Actinobacteriota and Bacteroidota, whereas those in temperate soils tended to be oligotrophs, such as Acidobacteriota and Chloroflexi. Functional predictions showed that in comparison to copiotrophs in Antarctic soils, temperate-inhabiting oligotrophic bacteria exhibited an 84.2-91.1% lower abundance of labile C decomposition genes (hemicellulose, cellulose, monosaccharides, and disaccharides), whereas a 74.4% higher abundance of stable C decomposition (lignin). Genes involved in N cycling (nitrogen fixation, assimilatory nitrate reduction, and denitrification) were 24.3-64.4% lower in temperate soils than in Antarctic soils. Collectively, our study provides a framework for describing the life strategies of soil bacteria, which are crucial to global biogeochemical cycles.

Partitioning and integrating of plant traits and phylogeny in assessing diversity along secondary forest succession in Loess Plateau of China.

Assessing plant diversity during community succession based on plant trait and phylogenetic features within a community (alpha scale) and among communities (beta scale) could improve our understanding of community succession mechanism. However, whether changes of community functional diversity at alpha and beta scale are structured by different traits and whether integrating plant traits and phylogeny can enhance the ability in detecting diversity pattern have not been studied in detail. Thirty plots representing different successional stages were established on the Loess Plateau of China and 15 functional traits were measured for all coexisting species. We first analyzed the functional alpha and beta diversity along succession by decomposing species trait into alpha and beta components and then integrated key traits with phylogenetic information to explore their roles in shaping species turnover during community succession. We found that functional alpha diversity increased along successional stages and was structured by morphological traits, while beta diversity decreased during succession and was more structured by stoichiometry traits. Phylogenetic alpha diversity showed congruent pattern with functional alpha diversity because of phylogenetic conservation of trait alpha components (variation within community), while beta diversity showed incongruent pattern due to phylogenetic randomness of trait beta components (variation among communities). Furthermore, only integrating relatively conserved traits (plant height and seed mass) and phylogenetic information can raise the detecting ability in assessing diversity change. Overall, our results reveal the increasing niche differentiation within community and functional convergence among communities with succession process, indicating the importance of matching traits with scale in studying community functional diversity and the asymmetry of traits and phylogeny in reflecting species ecological differences under long-term selection pressures.

Different mechanisms driving increasing abundance of microbial phosphorus cycling gene groups along an elevational gradient.

Microbes play an integral role in forest soil phosphorus (P) cycling. However, the variation of microbial P-cycling functional genes and their controlling factors in forest soils is unclearly. We used metagenomics to investigate changes in the abundance of genes involved in P-starvation response regulation, P-uptake and transport, and P-solubilization and mineralization along the five elevational gradients. Our results showed the abundance of three P cycling gene groups increasing along the elevational gradient. Acidobacteria and Proteobacteria were the dominant microbial phyla determining the turnover of soil P-solubilization and immobilization. Along the elevational gradient, soil substrates are the major factor explaining variation in P-starvation response regulation genes. Soil environment is the main driver of P-uptake and transport and P-solubilization and mineralization genes. This study provided insights into the regulation of P-cycling from a microbial functional profile perspective, highlighting the importance of substrate and environmental factors for P-cycling genes in forest soils.

Temperate Lianas Have More Acquisitive Strategies than Host Trees in Leaf and Stem Traits, but Not Root Traits.

Increasingly, tropical studies based on aboveground traits have suggested that lianas have a more acquisitive strategy than trees, thereby possibly explaining the increase in lianas relative to trees in many tropical forests under global change. However, few studies have tested whether this pattern can be extended to root traits and temperate forests. In this study, we sampled 61 temperate liana-host tree pairs and quantified 11 commonly studied functional traits representative of plant economics in roots, stems, and leaves; we aimed to determine whether root, stem and leaf traits are coordinated across lifeforms, and whether temperate lianas are also characterized by more fast and acquisitive traits than trees. Our results showed that leaf and stem traits were coordinated across lifeforms but not with root traits, suggesting that aboveground plant economics is not always correlated with belowground economics, and leaf and stem economic spectra cannot be expanded to the root directly. Compared with host trees, lianas had more acquisitive leaf and stem traits, such as higher specific leaf area and lower leaf dry matter content, leaf carbon content, leaf mass per area, and wood density, suggesting that lianas have a more acquisitive strategy than host trees in the temperate forest. The differences between lianas and trees in plant strategy may drive their contrasting responses to the changing temperate forest environment under global change.

Responses of AM fungal abundance to the drivers of global climate change: A meta-analysis.

Arbuscular mycorrhizal fungi (AMF), playing critical roles in carbon cycling, are vulnerable to climate change. However, the responses of AM fungal abundance to climate change are unclear. A global-scale meta-analysis was conducted to investigate the response patterns of AM fungal abundance to warming, elevated CO2 concentration (eCO2), and N addition. Both warming and eCO2 significantly stimulated AM fungal abundance by 18.6% (95%CI: 5.9%-32.8%) and 21.4% (15.1%-28.1%) on a global scale, respectively. However, the response ratios (RR) of AM fungal abundance decreased with the degree of warming while increased with the degree of eCO2. Furthermore, in warming experiments, as long as the warming exceeded 4 °C, its effects on AM fungal abundance changed from positive to negative regardless of the experimental durations, methods, periods, and ecosystem types. The effects of N addition on AM fungal abundance are -5.4% (-10.6%-0.2%), and related to the nitrogen fertilizer input rate and ecosystem type. The RR of AM fungal abundance is negative in grasslands and farmlands when the degree of N addition exceeds 33.85 and 67.64 kg N ha-1 yr-1, respectively; however, N addition decreases AM fungal abundance in forests only when the degree of N addition exceeds 871.31 kg N ha-1 yr-1. The above results provide an insight into predicting ecological functions of AM fungal abundance under global changes.

[Stability of Soil Aggregates at Different Altitudes in Qinling Mountains and Its Coupling Relationship with Soil Enzyme Activities].

To explore changes in soil aggregate stability along an elevation gradient, and its regulating factors, soil samples were taken from the 0-10 cm surface layer at 3 different elevations on Taibai Mountain. We measured and analyzed the distribution of soil aggregates, physical and chemical properties, microbial biomass, and extracellular enzymes. The results showed that: ① the soil aggregates from the 3 elevations had mean weight diameters (MWD) of 2.17 mm, 1.83 mm, and 1.82 mm (increasing elevation), and geometric mean diameters (GMD) of 1.66 mm, 1.39 mm, and 1.32 mm, respectively. ② The change in soil aggregate stability along an elevation gradient was regulated by extracellular enzymes in the soil, in particular, the LAP in soil meso-aggregate and the BG in soil micro-aggregate. ③ Microorganisms can alleviate the N limitation at high elevations by adjusting the relative production of extracellular enzymes and altering nutrient utilization efficiency, which also changes soil aggregate stability along an elevation gradient. The results of this study have important scientific significance for soil quality evaluation and ecological environment protection in Taibai Mountain.

Contrasting Responses of Rhizosphere Bacteria, Fungi and Arbuscular Mycorrhizal Fungi Along an Elevational Gradient in a Temperate Montane Forest of China.

Elevational gradients strongly affect microbial biodiversity in bulk soil through altering plant and soil properties, but the effects on rhizosphere microbial patterns remain unclear, especially at large spatial scales. We therefore designed an elevational gradient experiment to examine rhizosphere microbial (bacteria, fungi and arbuscular mycorrhizal fungi) diversity and composition using Illumina sequencing of the 16S rRNA and ITS genes for comparison to plant and soil properties. Our results showed that bacterial and fungal alpha diversity was significantly higher at mid-elevation, while AMF alpha diversity decreased monotonically. The beta diversities of the three groups were significantly affected by elevational gradients, but the effect on bacterial beta diversity was larger than on fungal and AMF beta diversity. Proteobacteria, the dominant phyla of bacteria, was significantly higher at the mid-elevation, while Acidobacteria and Actinobacteria significantly decreased as elevation increased. The main fungal taxa, Basidiomycota, significantly decreased with elevation, and Ascomycota significantly increased with elevation. Glomeromycota, the dominant AMF phyla, responded insignificantly to the elevational gradients. The responses of bacterial and fungal alpha diversity were mostly associated with tree diversity and organic carbon, whereas AMF alpha diversity mainly depended on litter N and P. Changes in bacterial community composition along the elevational gradient were explained primarily by litter N and P, and litter P was the main driver of fungal and AMF community composition. Overall, our results suggest that plant litter, particularly litter N and P, were the main source of external carbon input and drove the observed differences in rhizosphere microbial diversity and community composition. Our results highlight the importance of litter nutrition in structuring rhizosphere microbial communities in mountain ecosystems.

Canopy disturbance and gap partitioning promote the persistence of a pioneer tree population in a near-climax temperate forest of the Qinling Mountains, China.

An unresolved question of temperate forests is how pioneer tree species persist in mature forests. In order to understand the responsible mechanisms, we investigated a near-climax mixed temperate forest dominated by Betula albosinensis in the Qinling Mountains of China. Through establishing four 50 m × 50 m plots, we examined the canopy disturbance characteristics and its effects on tree recruitments. We further test the intra- and interspecific effects on the recruitment of B. albosinensis. The obtained data demonstrated canopy disturbance was frequent but most small-sized. The canopy gaps are caused mainly by adult B. albosinensis by snapping. The regeneration of coexistent tree species shows a distinct preference for gap size. B. albosinensis were clumped at the juvenile stage and small scales. B. albosinensis juveniles were positively associated with B. utilis juveniles and negatively associated with the conspecific and B. utilis large trees. In addition, B. albosinensis juveniles showed negative associations with contemporary other tree species. Our results suggested that canopy disturbance caused by canopy trees and gap partitioning among the coexistent tree species are important for the persistence of the mixed forest. As a main gapmaker, B. albosinensis appear to develop a self-perpetuating life-history trait and allow them to persist.

Shifts in Plant Community Assembly Processes across Growth Forms along a Habitat Severity Gradient: A Test of the Plant Functional Trait Approach.

Species respond to changes in their environments. A core goal in ecology is to understand the process of plant community assembly in response to a changing climate. Examining the performance of functional traits and trait-based assembly patterns across species among different growth forms is a useful way to explore the assembly process. In this study, we constructed a habitat severity gradient including several environment factors along a 2300 m wide elevational range at Taibai Mountain, central China. Then we assessed the shift on functional trait values and community assembly patterns along this gradient across species among different growth forms. We found that (1) although habitat-severity values closely covaried with elevation in this study, an examined communities along a habitat severity gradient might reveal community dynamics and species responses under future climate change. (2) the occurrence of trait values along the habitat severity gradient across different growth forms were similar, whereas the assembly pattern of herbaceous species was inconsistent with the community and woody species. (3) the trait-trait relationships of herbaceous species were dissimilar to those of the community and woody species. These results suggest that (1) community would re-assemble along habitat severity gradient through environmental filtering, regardless of any growth forms and that (2) different growth forms' species exhibiting similar trait values' shift but different trait-trait relationship by different trait combinations.

Using phylogeny and functional traits for assessing community assembly along environmental gradients: A deterministic process driven by elevation.

Community assembly processes is the primary focus of community ecology. Using phylogenetic-based and functional trait-based methods jointly to explore these processes along environmental gradients are useful ways to explain the change of assembly mechanisms under changing world. Our study combined these methods to test assembly processes in wide range gradients of elevation and other habitat environmental factors. We collected our data at 40 plots in Taibai Mountain, China, with more than 2,300 m altitude difference in study area and then measured traits and environmental factors. Variance partitioning was used to distinguish the main environment factors leading to phylogeny and traits change among 40 plots. Principal component analysis (PCA) was applied to colligate other environment factors. Community assembly patterns along environmental gradients based on phylogenetic and functional methods were studied for exploring assembly mechanisms. Phylogenetic signal was calculated for each community along environmental gradients in order to detect the variation of trait performance on phylogeny. Elevation showed a better explanatory power than other environment factors for phylogenetic and most traits' variance. Phylogenetic and several functional structure clustered at high elevation while some conserved traits overdispersed. Convergent tendency which might be caused by filtering or competition along elevation was detected based on functional traits. Leaf dry matter content (LDMC) and leaf nitrogen content along PCA 1 axis showed conflicting patterns comparing to patterns showed on elevation. LDMC exhibited the strongest phylogenetic signal. Only the phylogenetic signal of maximum plant height showed explicable change along environmental gradients. Synthesis. Elevation is the best environment factors for predicting phylogeny and traits change. Plant's phylogenetic and some functional structures show environmental filtering in alpine region while it shows different assembly processes in middle- and low-altitude region by different trait/phylogeny. The results highlight deterministic processes dominate community assembly in large-scale environmental gradients. Performance of phylogeny and traits along gradients may be independent with each other. The novel method for calculating functional structure which we used in this study and the focus of phylogenetic signal change along gradients may provide more useful ways to detect community assembly mechanisms.

Patterns of taxonomic, phylogenetic diversity during a long-term succession of forest on the Loess Plateau, China: insights into assembly process.

Quantifying the drivers underlying the distribution of biodiversity during succession is a critical issue in ecology and conservation, and also can provide insights into the mechanisms of community assembly. Ninety plots were established in the Loess Plateau region of northern Shaanxi in China. The taxonomic and phylogenetic (alpha and beta) diversity were quantified within six succession stages. Null models were used to test whether phylogenetic distance observed differed from random expectations. Taxonomic beta diversity did not show a regular pattern, while phylogenetic beta diversity decreased throughout succession. The shrub stage occurred as a transition from phylogenetic overdispersion to clustering either for NRI (Net Relatedness Index) or betaNRI. The betaNTI (Nearest Taxon Index) values for early stages were on average phylogenetically random, but for the betaNRI analyses, these stages were phylogenetically overdispersed. Assembly of woody plants differed from that of herbaceous plants during late community succession. We suggest that deterministic and stochastic processes respectively play a role in different aspects of community phylogenetic structure for early succession stage, and that community composition of late succession stage is governed by a deterministic process. In conclusion, the long-lasting evolutionary imprints on the present-day composition of communities arrayed along the succession gradient.

Population structure and spatial pattern of main tree species in secondary Betula platyphylla forest in Ziwuling Mountains, China.

This study investigated a typical secondary Betula platyphylla forest in the Ziwuling Mountains, Loess Plateau, China. In the sample plot, the DBH (diameter at breast height) class structure of B. platyphylla was bimodal. Individuals with small and large DBH values were abundant. The DBH structures of Quercus wutaishanica and Pinus tabulaeformis were close to that of the logistic model, thus suggesting the increasing population of these species. B. platyphylla and Populus davidiana showed random spatial distributions at almost all scales. However, Q. wutaishanica and P. tabulaeformis were significantly clumped at small scales. B. platyphylla had a negative spatial relation with Q. wutaishanica at small spatial scales. P. tabulaeformis and Q. wutaishanica showed negative spatial correlations at small scales, but they had positive correlations at large scales. These results suggest that P. tabulaeformis and Q. wutaishanica shared habitat preferences at these scales. In the future, the secondary B. platyphylla forest in the Ziwuling Mountains in the Loess Plateau will probably change into a multi-species mixed forest (Quercus-Pinus mixed forest). Assisted restoration strategies must be employed to improve the regeneration dynamics of the forest in the long term.

Regeneration of Betula albosinensis in strip clearcut and uncut forests of the Qinling Mountains in China.

To contribute to a better understanding of the regeneration strategy of Betula albosinensis forests and the likely reasons behind either the successful recovery or failure after strip clearcutting, we compared the population structures and spatial patterns of B. albosinensis in eight B. albosinensis stands in Qinling Mountains, China. Four cut and four uncut stands were selected, and each sampled using a single large plot (0.25 ha). Results indicated that, on the one hand, B. albosinensis recruitment was scarce (average of 48 stems ha(-1)) in the uncut stands, relative to the mature population (average of 259 stems ha(-1)), suggesting a failure of recruitment. On the other hand, the subsequent regeneration approximately 50 years after the strip clearcutting showed that the density of the target species seedlings and saplings has increased significantly, and the current average density of seedlings and saplings was 156 stems ha(-1). The clumped spatial pattern of B. albosinensis suggested that their regeneration was highly dependent on canopy disturbance. However, recruitment remained poor in the uncut stands because most gaps were small in scale. The successful regeneration of sunlight-loving B. albosinensis after strip clearcutting was attributed to the exposed land and availability of more sunlight. Bamboo density did not influence B. albosinensis recruitment in the uncut stands. However, stand regeneration was impeded after strip clearcutting; thus, removing bamboo is essential in improving the competitive status of B. albosinensis at the later stage of forest regeneration after clearcutting. The moderate severity of disturbance resulting from strip clearcutting reversed the degeneration trend of primary B. albosinensis stands. This outcome can help strike a balance between forest conservation and the demand for wood products by releasing space and exposing the forested land for recruitment. Life history traits and spatiotemporal disturbance magnitude are important factors to consider in implementing effective B. albosinensis regeneration strategies.

[Species composition and point pattern analysis of standing trees in secondary Betula albosinensis forest in Xiaolongshan of west Qinling Mountains].

An investigation was conducted on the species composition and population diameter-class structure of a typical secondary Betula albo-sinensis forest in Xiaolongshan of west Qinling Mountains, and the spatial distribution pattern and interspecific correlations of the main populations were analyzed at multiple scales by the O-ring functions of single variable and double variables. In the test forest, B. albo-sinensis was obviously dominant, but from the analysis of DBH class distribution, the B. albo-sinensis seedlings were short of, and the natural regeneration was very poor. O the contrary, the regeneration of Abies fargesii and Populus davidianas was fine. B. albo-sinensis and Salix matsudana had a random distribution at almost all scales, while A. fargesii and P. davidianas were significantly clumped at small scale. B. albo-sinensis had positive correlations with A. fargesii and P. davidianas at medium scale, whereas S. matsudana had negative correlations with B. albo-sinensis, A. fargesii, and P. davidianas at small scale. No significant correlations were observed between other species. The findings suggested that the spatial distribution patterns of the tree species depended on their biological characteristics at small scale, but on the environmental heterogeneity at larger scales. In a period of future time, B. albo-sinensis would still be dominant, but from a long-term view, it was necessary to take some artificial measures to improve the regeneratio of B. albo-sinensis.