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1.
Am J Med Genet A ; 188(10): 3024-3031, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-35869935

RESUMEN

The genetic factors contributing to primary ciliary dyskinesia (PCD), a rare autosomal recessive disorder, remain elusive for ~20%-35% of patients with complex and abnormal clinical phenotypes. Our study aimed to identify causative variants of PCD-associated pathogenic candidate genes using whole-exome sequencing (WES). All patients were diagnosed with PCD based on clinical phenotype or transmission electron microscopy images of cilia. WES and bioinformatic analysis were then conducted on patients with PCD. Identified candidate variants were validated by Sanger sequencing. Pathogenicity of candidate variants was then evaluated using in silico software and the American College of Medical Genetics and Genomics (ACMG) database. In total, 13 rare variants were identified in patients with PCD, among which were three homozygous causative variants (including one splicing variant) in the PCD-associated genes CCDC40 and DNAI1. Moreover, two stop-gain heterozygous variants of DNAAF3 and DNAH1 were classified as pathogenic variants based on the ACMG criteria. This study identified novel potential pathogenic genetic factors associated with PCD. Noteworthy, the patients with PCD carried multiple rare causative gene variants, thereby suggesting that known causative genes along with other functional genes should be considered for such heterogeneous genetic disorders.


Asunto(s)
Trastornos de la Motilidad Ciliar , Síndrome de Kartagener , Pueblo Asiatico/genética , China , Cilios , Trastornos de la Motilidad Ciliar/genética , Humanos , Síndrome de Kartagener/diagnóstico , Síndrome de Kartagener/genética , Mutación , Secuenciación del Exoma
2.
Entropy (Basel) ; 24(3)2022 Mar 11.
Artículo en Inglés | MEDLINE | ID: mdl-35327905

RESUMEN

Quantum machine learning is a promising application of quantum computing for data classification. However, most of the previous research focused on binary classification, and there are few studies on multi-classification. The major challenge comes from the limitations of near-term quantum devices on the number of qubits and the size of quantum circuits. In this paper, we propose a hybrid quantum neural network to implement multi-classification of a real-world dataset. We use an average pooling downsampling strategy to reduce the dimensionality of samples, and we design a ladder-like parameterized quantum circuit to disentangle the input states. Besides this, we adopt an all-qubit multi-observable measurement strategy to capture sufficient hidden information from the quantum system. The experimental results show that our algorithm outperforms the classical neural network and performs especially well on different multi-class datasets, which provides some enlightenment for the application of quantum computing to real-world data on near-term quantum processors.

3.
Phys Chem Chem Phys ; 22(33): 18265-18271, 2020 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-32578614

RESUMEN

A numerical study that combines device simulation and first-principle calculations is performed, aiming to alleviate the performance degradation of graphene nanoribbon field-effect devices with edge defects. We believe that investigating the symmetry between the sublattices of graphene is a novel approach to understand this key problem. The results show that the edge defects that break the symmetry between the sublattices of graphene cause more severe degradation of the device performance because they induce highly localized electronic states, which dramatically affect the transport of carriers. We propose a strategy to alleviate the localization of electronic states by rebuilding the symmetry between the sublattices. This strategy can be realized by introducing foreign radicals to modify the defective edge. A stability analysis is performed to find the most stable modified structures. The final effect of our strategy on the corresponding devices demonstrates that it can effectively address specific edge defects and remarkably improve the ON-state current and subthreshold swing.

4.
Sensors (Basel) ; 20(14)2020 Jul 18.
Artículo en Inglés | MEDLINE | ID: mdl-32708473

RESUMEN

As one of the important components of electrocardiogram (ECG) signals, QRS signal represents the basic characteristics of ECG signals. The detection of QRS waves is also an essential step for ECG signal analysis. In order to further meet the clinical needs for the accuracy and real-time detection of QRS waves, a simple, fast, reliable, and hardware-friendly algorithm for real-time QRS detection is proposed. The exponential transform (ET) and proportional-derivative (PD) control-based adaptive threshold are designed to detect QRS-complex. The proposed ET can effectively narrow the magnitude difference of QRS peaks, and the PD control-based method can adaptively adjust the current threshold for QRS detection according to thresholds of previous two windows and predefined minimal threshold. The ECG signals from MIT-BIH databases are used to evaluate the performance of the proposed algorithm. The overall sensitivity, positive predictivity, and accuracy for QRS detection are 99.90%, 99.92%, and 99.82%, respectively. It is also implemented on Altera Cyclone V 5CSEMA5F31C6 Field Programmable Gate Array (FPGA). The time consumed for a 30-min ECG record is approximately 1.3 s. It indicates that the proposed algorithm can be used for wearable heart rate monitoring and automatic ECG analysis.


Asunto(s)
Algoritmos , Electrocardiografía , Procesamiento de Señales Asistido por Computador , Bases de Datos Factuales , Humanos
5.
Sensors (Basel) ; 20(4)2020 Feb 14.
Artículo en Inglés | MEDLINE | ID: mdl-32075020

RESUMEN

Lightning waveform plays an important role in lightning observation, location, and lightning disaster investigation. Based on a large amount of lightning waveform data provided by existing real-time very low frequency/low frequency (VLF/LF) lightning waveform acquisition equipment, an automatic and accurate lightning waveform classification method becomes extremely important. With the widespread application of deep learning in image and speech recognition, it becomes possible to use deep learning to classify lightning waveforms. In this study, 50,000 lightning waveform samples were collected. The data was divided into the following categories: positive cloud ground flash, negative cloud ground flash, cloud ground flash with ionosphere reflection signal, positive narrow bipolar event, negative narrow bipolar event, positive pre-breakdown process, negative pre-breakdown process, continuous multi-pulse cloud flash, bipolar pulse, skywave. A multi-layer one-dimensional convolutional neural network (1D-CNN) was designed to automatically extract VLF/LF lightning waveform features and distinguish lightning waveforms. The model achieved an overall accuracy of 99.11% in the lightning dataset and overall accuracy of 97.55% in a thunderstorm process. Considering its excellent performance, this model could be used in lightning sensors to assist in lightning monitoring and positioning.

6.
J Cell Mol Med ; 23(10): 7099-7104, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31338992

RESUMEN

Pathogenic mutation of protein C (PROC) gene results into the deficiency of PROC activity. This study aimed to identify the pathogenic genetic variants and to explore the functional consequence in Chinese familial venous thrombosis (VTE). Whole exome sequencing was performed to identify the pathogenic variants of anticoagulant factors. Serum coagulation and anti-coagulation factors activity were assayed to evaluate the genetic association. Functional study of PROC antigen secretion deficiency was conducted in VTE subjects and in vitro cell lines. One rare pathogenic variant (p.Ala178Pro) was identified in the four VTE subjects but not in the normal subjects from the family. An inframeshift variant (rs199469469) was also identified in a paediatric subject of the pedigree. Further evaluation of serum PROC activity levels in p.Ala178Pro variants VTE carriers showed significantly lower PROC activity compared to non-carriers. Furthermore, in vitro study showed that the p.Ala178Pro mutant cells had a consistent reduction in concentration of PROC antigen. In conclusions, our study demonstrated the pathogenic variant (p.Ala178Pro) contributed to PROC type I activity deficiency, which may be due to decreased secretion of PROC.


Asunto(s)
Pueblo Asiatico/genética , Mutación/genética , Proteína C/genética , Trombosis de la Vena/genética , Antígenos/metabolismo , Secuencia de Bases , Coagulación Sanguínea/genética , Femenino , Células HEK293 , Humanos , Masculino , Linaje , Trombosis de la Vena/sangre , Secuenciación del Exoma
7.
J Cell Biochem ; 120(8): 12300-12310, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-30809853

RESUMEN

The disorders of hemostasis and coagulation were believed to be the main contributors to the pathogenesis of pulmonary thromboembolism (PTE), and platelets are the basic factors regulating hemostasis and coagulation and play important roles in the process of thrombosis. This study investigated the proteome of human umbilical vein endothelial cells (HUVECs) with platelet endothelial aggregation receptor-1 (PEAR1) knockdown using the isobaric tags for relative and absolute quantitation (iTRAQ) method and analyzed the role of differential abundance proteins (DAPs) in the regulation of platelets aggregation. Our results showed that the conditioned media-culturing HUVECs with PEAR1 knockdown partially suppressed the adenosine diphosphate (ADP)-induced platelet aggregation. The proteomics analysis was performed by using the iTRAQ technique, and a total of 215 DAPs (124 protein was upregulated and 91 protein were downregulated) were identified. The Gene Ontology (GO) enrichment analysis showed that proteins related to platelet α granule, adenosine triphosphate metabolic process, and endocytosis were significantly enriched. Further, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis also identified the significant enrichment of endocytosis-related pathways. The real-time polymerase chain reaction assay confirmed that the expression of P2Y12 , mitochondrial carrier 2, NADH dehydrogenase (ubiquinone) iron-sulfur protein 3, and ubiquinol-cytochrome c reductase hinge protein are significantly downregulated in the HUVECs with PEAR1 knockdown. In conclusion, our in vitro results implicated that DAPs induced by PEAR1 knockdown might contribute to the platelet aggregation. Proteomic studies by employing GO enrichment and KEGG pathway analysis suggested that the potential effects of DAPs on platelet aggregation may be linked to the balance of ADP synthesis or degradation in mitochondria.


Asunto(s)
Adenosina Difosfato/metabolismo , Células Endoteliales de la Vena Umbilical Humana/metabolismo , Agregación Plaquetaria , Proteoma/análisis , Proteoma/metabolismo , Receptores de Superficie Celular/antagonistas & inhibidores , Células Endoteliales de la Vena Umbilical Humana/citología , Humanos , Espectrometría de Masas , Redes y Vías Metabólicas , Receptores de Superficie Celular/metabolismo , Receptores Purinérgicos P2Y12/metabolismo , Transducción de Señal
8.
Nanotechnology ; 29(45): 455704, 2018 Nov 09.
Artículo en Inglés | MEDLINE | ID: mdl-30136649

RESUMEN

Among feature-rich graphene-related materials, graphene nanoribbon (GNR)-based nanostructures are particularly attractive because they can provide tunable and excellent electronic properties. However, the integration of high-quality GNR-based nanostructures on a large scale is still an open area. In this paper, a novel idea is proposed: transport isolation. By a construction of different orbital hybridizations of the carbon atoms in graphene, the GNR regions and functionalized graphene regions are integrated. In the hybrid system, the functionalized graphene regions play the role of the isolation barrier. Based on the first principle calculation, it is demonstrated that about 0.6 nm wide hydrogenated graphene is enough to reliably isolate the GNR regions. Besides, it is revealed that once the armchair GNRs (AGNRs) are fully isolated by functionalized graphene, their band gaps are basically maintained and are weakly dependent on the width of functionalized graphene regions. In addition, the transport characteristics of those isolated AGNRs are verified to be similar to the pristine AGNRs at the device level. The above virtues infer our method can effectively produce a reliable isolation, verified by a simulation of device integration demo. We hope it can provide an intriguing option for the integration of GNR-based nanostructures.

9.
J Nanobiotechnology ; 14: 10, 2016 Feb 04.
Artículo en Inglés | MEDLINE | ID: mdl-26846666

RESUMEN

BACKGROUND: The toxicity of CdSe/ZnS quantum dots (QDs) in the environment and biological systems has become a major concern for the nanoparticle community. However, the potential toxicity of QDs on immune cells and its corresponding immune functions remains poorly understood. In this study, we investigated the immunotoxicity of CdSe/ZnS QDs using the in vitro in macrophages and lymphocytes and in vivo in BALB/c mice. RESULTS: Our results indicated that macrophages treated with 1.25 or 2.5 nM QDs exhibited decreased cell viability, increased levels of reactive oxygen species (ROS), elevated apoptotic events, altered phagocytic ability, and decreased release of TNF-α and IL-6 by upon subsequent stimulation with Lipopolysaccharide (LPS). In contrast, lymphocytes exposed to QDs exhibited enhanced cell viability, increased release of TNF-α and IL-6 following exposure with CpG-ODN, and decreased transformation ability treatment in response to LPS. To study the in vivo effects in mice, we showed that QDs injection did not cause significant changes to body weight, hematology, organ histology, and phagocytic function of peritoneal macrophages in QDs-treated mice. In addition, the QDs formulation accumulated in major immune organs for more than 42 days. Lymphocytes from QDs-treated mice showed reduced cell viability, changed subtype proportions, increased TNF-α and IL-6 release, and reduced transformation ability in response to LPS. CONCLUSIONS: Taken together, these results suggested that exposures to CdSe/ZnS QDs could suppress immune-defense against foreign stimuli, which in turn could result in increased susceptibility of hosts to diseases.


Asunto(s)
Compuestos de Cadmio/inmunología , Compuestos de Cadmio/toxicidad , Linfocitos/efectos de los fármacos , Macrófagos/efectos de los fármacos , Puntos Cuánticos/toxicidad , Sulfuros/inmunología , Sulfuros/toxicidad , Animales , Línea Celular , Supervivencia Celular/efectos de los fármacos , Supervivencia Celular/inmunología , Interleucina-6/inmunología , Interleucina-6/metabolismo , Linfocitos/inmunología , Macrófagos/inmunología , Masculino , Ratones , Ratones Endogámicos BALB C , Nanopartículas/toxicidad , Oligodesoxirribonucleótidos/inmunología , Oligodesoxirribonucleótidos/metabolismo , Especies Reactivas de Oxígeno/inmunología , Especies Reactivas de Oxígeno/metabolismo , Factor de Necrosis Tumoral alfa/inmunología , Factor de Necrosis Tumoral alfa/metabolismo
10.
J Digit Imaging ; 29(6): 706-715, 2016 12.
Artículo en Inglés | MEDLINE | ID: mdl-27417207

RESUMEN

To address the low compression efficiency of lossless compression and the low image quality of general near-lossless compression, a novel near-lossless compression algorithm based on adaptive spatial prediction is proposed for medical sequence images for possible diagnostic use in this paper. The proposed method employs adaptive block size-based spatial prediction to predict blocks directly in the spatial domain and Lossless Hadamard Transform before quantization to improve the quality of reconstructed images. The block-based prediction breaks the pixel neighborhood constraint and takes full advantage of the local spatial correlations found in medical images. The adaptive block size guarantees a more rational division of images and the improved use of the local structure. The results indicate that the proposed algorithm can efficiently compress medical images and produces a better peak signal-to-noise ratio (PSNR) under the same pre-defined distortion than other near-lossless methods.


Asunto(s)
Algoritmos , Compresión de Datos , Humanos , Imagen por Resonancia Magnética/estadística & datos numéricos , Relación Señal-Ruido , Tomografía Computarizada por Rayos X/estadística & datos numéricos
11.
Comput Methods Programs Biomed ; 254: 108315, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38991373

RESUMEN

BACKGROUND AND OBJECTIVE: Deep learning usually achieves good performance in the supervised way, which requires a large amount of labeled data. However, manual labeling of electrocardiograms (ECGs) is laborious that requires much medical knowledge. Semi-supervised learning (SSL) provides an effective way of leveraging unlabeled data to improve model performance, providing insight for solving this problem. The objective of this study is to improve the performance of cardiovascular disease (CVD) detection by fully utilizing unlabeled ECG. METHODS: A novel SSL algorithm fusing consistency regularization and pseudo-labeling techniques (CPSS) is proposed. CPSS consists of supervised learning and unsupervised learning. For supervised learning, the labeled ECGs are mapped into prediction vectors by the classifier. The cross-entropy loss function is used to optimize the classifier. For unsupervised learning, the unlabeled ECGs are weakly and strongly augmented, and a consistency loss is used to minimize the difference between the classifier's predictions for the two augmentations. Pseudo-labeling techniques include positive pseudo-labeling (PL) and ranking-based negative pseudo-labeling (RNL). PL introduces pseudo-labels for data with high prediction confidence. RNL assigns negative pseudo-labels to the lower-ranked categories in the prediction vectors to leverage data with low prediction confidence. In this study, VGGNet and ResNet are used as classifiers, which are jointly optimized by labeled and unlabeled ECGs. RESULTS: CPSS has been validated on several databases. With the same number of labeled ECGs (10%), it improves the accuracies over pure supervised learning by 13.59%, 4.60%, and 5.38% in the CPSC2018, PTB-XL, and Chapman databases, respectively. CPSS achieves comparable results to the fully supervised method with only 10% of labeled ECGs, which reduces the labeling workload by 90%. In addition, to verify the practicality of CPSS, a cardiovascular disease monitoring system is designed by heterogeneously deploying the trained classifiers on an SoC (system-on-a-chip), which can detect CVD in real time. CONCLUSION: The results of this study indicate that the proposed CPSS can significantly improve the performance of CVD detection using unlabeled ECG, which reduces the burden of ECG labeling in deep learning. In addition, the designed monitoring system makes the proposed CPSS promising for real-world applications.


Asunto(s)
Algoritmos , Enfermedades Cardiovasculares , Aprendizaje Profundo , Electrocardiografía , Aprendizaje Automático Supervisado , Humanos , Electrocardiografía/métodos , Enfermedades Cardiovasculares/diagnóstico , Aprendizaje Automático no Supervisado , Bases de Datos Factuales
12.
Artículo en Inglés | MEDLINE | ID: mdl-38995709

RESUMEN

The design of convolutional neural network (CNN) hardware accelerators based on a single computing engine (CE) architecture or multi-CE architecture has received widespread attention in recent years. Although this kind of hardware accelerator has advantages in hardware platform deployment flexibility and development cycle, it is still limited in resource utilization and data throughput. When processing large feature maps, the speed can usually only reach 10 frames/s, which does not meet the requirements of application scenarios, such as autonomous driving and radar detection. To solve the above problems, this article proposes a full pipeline hardware accelerator design based on pixel. By pixel-by-pixel strategy, the concept of the layer is downplayed, and the generation method of each pixel of the output feature map (Ofmap) can be optimized. To pipeline the entire computing system, we expand each layer of the neural network into hardware, eliminating the buffers between layers and maximizing the effect of complete connectivity across the entire network. This approach has yielded excellent performance. Besides that, as the pixel data stream is a fundamental paradigm in image processing, our fully pipelined hardware accelerator is universal for various CNNs (MobileNetV1, MobileNetV2 and FashionNet) in computer vision. As an example, the accelerator for MobileNetV1 achieves a speed of 4205.50 frames/s and a throughput of 4787.15 GOP/s at 211 MHz, with an output latency of 0.60 ms per image. This extremely shorts processing time and opens the door for AI's application in high-speed scenarios.

13.
Polymers (Basel) ; 15(24)2023 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-38139873

RESUMEN

Underwater artefacts are vulnerable to damage and loss of archaeological information during the extraction process. To solve this problem, it is necessary to apply temporary consolidation materials to fix the position of marine artifacts. A cross-linked network hydrogel composed of polyvinyl alcohol (PVA), tannic acid (TA), borax, and calcium chloride has been created. Four hydrogels with varying concentrations of tannic acid were selected to evaluate the effect. The hydrogel exhibited exceptional strength, high adhesion, easy removal, and minimal residue. The PVA/TA hydrogel and epoxy resin were combined to extract waterlogged wooden artifacts and marine archaeological ceramics from a 0.4 m deep tank. This experiment demonstrates the feasibility of using hydrogel for the extraction of marine artifacts.

14.
Comput Biol Med ; 152: 106390, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36473340

RESUMEN

The utilization of unlabeled electrocardiogram (ECG) data is always a critical topic in artificial intelligence healthcare, as the manual annotation for ECG data is a time-consuming task that requires much medical expertise. The recent development of self-supervised learning, especially contrastive learning, has provided helpful inspirations to solve this problem. In this paper, a joint cross-dimensional contrastive learning algorithm for unlabeled 12-lead ECGs is proposed. Unlike existing studies about ECG contrastive learning, our algorithm can simultaneously exploit unlabeled 1-dimensional ECG signals and 2-dimensional ECG images. A cross-dimensional contrastive learning method enhances the interaction between 1-dimensional and 2-dimensional ECG data, resulting in a more effective self-supervised feature learning. Combining this cross-dimensional contrastive learning, a 1-dimensional contrastive learning with ECG-specific transformations is employed to constitute a joint model. To pre-train this joint model, a new hybrid contrastive loss balances the 2 algorithms and uniformly describes the pre-training target. In the downstream classification task, the features learned by our algorithm shows impressive advantages. Compared with other representative methods, it achieves a at least 5.99% increase in accuracy. For real-world applications, an efficient heterogenous deployment on a "system-on-a-chip" (SoC) is designed. According to our experiments, the model can process 12-lead ECGs in real-time on the SoC. Furthermore, this heterogenous deployment can achieve a 14 × faster inference than the pure software deployment on the same SoC. In summary, our algorithm is a good choice for unlabeled 12-lead ECG utilization, the proposed heterogenous deployment makes it more practical in real-world applications.


Asunto(s)
Inteligencia Artificial , Electrocardiografía , Algoritmos , Instituciones de Salud , Programas Informáticos
15.
Polymers (Basel) ; 15(13)2023 Jul 02.
Artículo en Inglés | MEDLINE | ID: mdl-37447574

RESUMEN

The presence of calcareous concretions on the surface of marine archaeological ceramics is a frequently observed phenomenon. It is necessary to remove these materials when the deposits obscure the feature of ceramics. Unfortunately, calcareous concretions provide distinctive documentation of the burning history of ceramics. The interaction of acid solution or detachment of the deposit layers in physical ways leads to the loss of archeological information. To prevent the loss of archeological information and to achieve precise and gentle concretion removal, responsive hydrogel cleaning systems have been developed. The hydrogels synthesized are composed of networks of poly(vinyl acetate)/sodium alginate that exhibit desirable water retention properties, are responsive to Ca2+ ions, and do not leave any residues after undergoing cleaning treatment. Four distinct compositions were selected. The study of water retention properties involved quantifying the weight changes. The composition was obtained from Fourier transform infrared spectra. The microstructure was obtained from scanning electron microscopy. The mechanical properties were obtained from rheological measurements. To demonstrate both the efficiency and working mechanism of the selected hydrogels, a representative study of mocked samples is presented first. After selecting the most appropriate hydrogel composite, a cleaning process was implemented on the marine archaeological ceramics. This article demonstrates the advantages of stimuli-responsive hydrogels in controlling the release of acid solution release, thereby surpassing the limitations of traditional cleaning methods.

16.
Artículo en Inglés | MEDLINE | ID: mdl-37871091

RESUMEN

Recently, deep learning (DL) has enabled rapid advancements in electrocardiogram (ECG)-based automatic cardiovascular disease (CVD) diagnosis. Multi-lead ECG signals have lead systems based on the potential differences between electrodes placed on the limbs and the chest. When applying DL models, ECG signals are usually treated as synchronized signals arranged in Euclidean space, which is the abstraction and generalization of real space. However, conventional DL models typically merely focus on temporal features when analyzing Euclidean data. These approaches ignore the spatial relationships of different leads, which are physiologically significant and useful for CVD diagnosis because different leads represent activities of specific heart regions. These relationships derived from spatial distributions of electrodes can be conveniently created in non-Euclidean data, making multi-lead ECGs better conform to their nature. Considering graph convolutional network (GCN) adept at analyzing non-Euclidean data, a novel spatial-temporal residual GCN for CVD diagnosis is proposed in this work. ECG signals are firstly divided into single-channel patches and transferred into nodes, which will be connected by spatial-temporal connections. The proposed model employs residual GCN blocks and feed-forward networks to alleviate over-smoothing and over-fitting. Moreover, residual connections and patch dividing enable the capture of global and detailed spatial-temporal features. Experimental results reveal that the proposed model achieves at least a 5.85% and 6.80% increase in F1 over other state-of-the-art algorithms with similar parameters and computations in both PTB-XL and Chapman databases. It indicates that the proposed model provides a promising avenue for intelligent diagnosis with limited computing resources.

17.
Front Physiol ; 14: 1079503, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36814476

RESUMEN

In this paper, a fully-mapped field programmable gate array (FPGA) accelerator is proposed for artificial intelligence (AI)-based analysis of electrocardiogram (ECG). It consists of a fully-mapped 1-D convolutional neural network (CNN) and a fully-mapped heart rate estimator, which constitute a complementary dual-function analysis. The fully-mapped design projects each layer of the 1-D CNN to a hardware module on an Intel Cyclone V FPGA, and a virtual flatten layer is proposed to effectively bridge the feature extraction layers and fully-connected layer. Also, the fully-mapped design maximizes computational parallelism to accelerate CNN inference. For the fully-mapped heart rate estimator, it performs pipelined transformations, self-adaptive threshold calculation, and heartbeat count on the FPGA, without multiplexed usage of hardware resources. Furthermore, heart rate calculation is elaborately analyzed and optimized to remove division and acceleration, resulting in an efficient method suitable for hardware implementation. According to our experiments on 1-D CNN, the accelerator can achieve 43.08× and 8.38× speedup compared with the software implementations on ARM-Cortex A53 quad-core processor and Intel Core i7-8700 CPU, respectively. For the heart rate estimator, the hardware implementations are 25.48× and 1.55× faster than the software implementations on the two aforementioned platforms. Surprisingly, the accelerator achieves an energy efficiency of 63.48 GOPS/W, which obviously surpasses existing studies. Considering its power consumption is only 67.74 mW, it may be more suitable for resource-limited applications, such as wearable and portable devices for ECG monitoring.

18.
Clin Respir J ; 17(4): 263-269, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36748401

RESUMEN

INTRODUCTION: This study aimed to investigate the potential application of plasma signal peptide-complement C1r/C1s, Uegf and Bmp1-epidermal growth factor domain-containing protein 1 (SCUBE-1) as a biomarker in the diagnosis of pulmonary embolism (PE). METHODS: This cross-sectional study enrolled 177 patients who underwent PE diagnostic test and 87 healthy controls. The results of CT pulmonary angiogram (CTPA) were used as reference standards for PE diagnosis. The levels of SCUBE-1 and D-dimer in participants' plasma were detected with enzyme-linked immunosorbent assay and compared among patients with confirmed PE, suspicious PE and healthy controls. The diagnostic values were analysed using receiver operating characteristic (ROC) curve analysis. In addition, differences in plasma SCUBE-1 levels were compared among patients with different risk stratifications. RESULTS: The plasma SCUBE-1 concentration levels in patients with CTPA confirmed PE (14.28 ± 7.74 ng/ml) was significantly higher than those in the suspicious patients (11.11 ± 4.48 ng/ml) and in healthy control (4.40 ± 3.23 ng/ml) (P < 0.01). ROC curve analysis showed that at the cut-off of 7.789 ng/ml, SCUBE-1 has significant diagnostic value in differentiating PE patients from healthy control (AUC = 0.919, sensitivity = 81.25%, specificity = 92.13%), and the performance is more accurate than D-dimer (cut-off 273.4 ng/ml, AUC = 0.648, sensitivity = 65.75%, specificity = 67.42%). The combination of D-dimer with SCUBE-1 did not further improve the diagnostic value. However, SCUBE-1 did not show significant diagnostic value in identifying PE among suspicious patients There was no significant difference in SCUBE-1 level among different risk groups (P > 0.05). CONCLUSION: We believe that SCUBE-1 could be a potential coagulation-related marker for the diagnosis of PE.


Asunto(s)
Embolia Pulmonar , Humanos , Biomarcadores , Estudios Transversales , Productos de Degradación de Fibrina-Fibrinógeno/análisis , Proyectos Piloto , Embolia Pulmonar/diagnóstico por imagen , Curva ROC
19.
Bioengineering (Basel) ; 10(5)2023 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-37237677

RESUMEN

Most of the existing multi-lead electrocardiogram (ECG) detection methods are based on all 12 leads, which undoubtedly results in a large amount of calculation and is not suitable for the application in portable ECG detection systems. Moreover, the influence of different lead and heartbeat segment lengths on the detection is not clear. In this paper, a novel Genetic Algorithm-based ECG Leads and Segment Length Optimization (GA-LSLO) framework is proposed, aiming to automatically select the appropriate leads and input ECG length to achieve optimized cardiovascular disease detection. GA-LSLO extracts the features of each lead under different heartbeat segment lengths through the convolutional neural network and uses the genetic algorithm to automatically select the optimal combination of ECG leads and segment length. In addition, the lead attention module (LAM) is proposed to weight the features of the selected leads, which improves the accuracy of cardiac disease detection. The algorithm is validated on the ECG data from the Huangpu Branch of Shanghai Ninth People's Hospital (defined as the SH database) and the open-source Physikalisch-Technische Bundesanstalt diagnostic ECG database (PTB database). The accuracy for detection of arrhythmia and myocardial infarction under the inter-patient paradigm is 99.65% (95% confidence interval: 99.20-99.76%) and 97.62% (95% confidence interval: 96.80-98.16%), respectively. In addition, ECG detection devices are designed using Raspberry Pi, which verifies the convenience of hardware implementation of the algorithm. In conclusion, the proposed method achieves good cardiovascular disease detection performance. It selects the ECG leads and heartbeat segment length with the lowest algorithm complexity while ensuring classification accuracy, which is suitable for portable ECG detection devices.

20.
Biosensors (Basel) ; 12(7)2022 Jul 14.
Artículo en Inglés | MEDLINE | ID: mdl-35884327

RESUMEN

In the past few years, deep learning-based electrocardiogram (ECG) compression methods have achieved high-ratio compression by reducing hidden nodes. However, this reduction can result in severe information loss, which will lead to poor quality of the reconstructed signal. To overcome this problem, a novel quality-guaranteed ECG compression method based on a binary convolutional auto-encoder (BCAE) equipped with residual error compensation (REC) was proposed. In traditional compression methods, ECG signals are compressed into floating-point numbers. BCAE directly compresses the ECG signal into binary codes rather than floating-point numbers, whereas binary codes take up fewer bits than floating-point numbers. Compared with the traditional floating-point number compression method, the hidden nodes of the BCAE network can be artificially increased without reducing the compression ratio, and as many hidden nodes as possible can ensure the quality of the reconstructed signal. Furthermore, a novel optimization method named REC was developed. It was used to compensate for the residual between the ECG signal output by BCAE and the original signal. Complemented with the residual error, the restoration of the compression signal was improved, so the reconstructed signal was closer to the original signal. Control experiments were conducted to verify the effectiveness of this novel method. Validated by the MIT-BIH database, the compression ratio was 117.33 and the root mean square difference (PRD) was 7.76%. Furthermore, a portable compression device was designed based on the proposed algorithm using Raspberry Pi. It indicated that this method has attractive prospects in telemedicine and portable ECG monitoring systems.


Asunto(s)
Compresión de Datos , Procesamiento de Señales Asistido por Computador , Algoritmos , Arritmias Cardíacas , Compresión de Datos/métodos , Electrocardiografía , Humanos
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