Terrestrial laser scanning: a new standard of forest measuring and modelling?

BACKGROUND: Laser scanning technology has opened new horizons for the research of forest dynamics, because it provides a largely automated and non-destructive method to rapidly capture the structure of individual trees and entire forest stands at multiple spatial scales. The structural data themselves or in combination with additional remotely sensed data also provide information on the local physiological state of structures within trees. The capacity of new methods is facilitated by the ongoing development of automated processing tools that are designed to capture information from the point cloud data provided by the remote measurements. SCOPE: Terrestrial laser scanning (TLS), performed from the ground or from unmanned aerial vehicles, in particular, has potential to become a unifying measurement standard for forest research questions, because the equipment is flexible to use in the field and has the capacity to capture branch-level structural information at the forestplot or even forest scale. This issue of Annals of Botany includes selected papers that exemplify the current and potential uses of TLS, such as for examination of crown interactions between trees, growth dynamics of mixed stands, non-destructive characterization of urban trees, and enhancement of ecological and evolutionary models. The papers also present current challenges in the applicability of TLS methods and report recent developments in methods facilitating the use of TLS data for research purposes, including automatic processing chains and quantifying branch and above-ground biomass. In this article, we provide an overview of the current and anticipated future capacity of TLS and related methods in solving questions that utilize measurements and models of forests. CONCLUSIONS: Due to its measurement speed, TLS provides a method to effortlessly capture large amounts of detailed structural forest information, and consequent proxy data for tree and forest processes, at a far wider spatial scale than is feasible with manual measurements. Issues with measurement precision and occlusion of laser beams before they reach their target structures continue to reduce the accuracy of TLS data, but the limitations are counterweighted by the measurement speed that enables large sample sizes. The currently high time-cost of analysing TLS data, in turn, is likely to decrease through progress in automated processing methods. The developments point towards TLS becoming a new and widely accessible standard tool in forest measurement and modelling.

Integrating terrestrial laser scanning with functional-structural plant models to investigate ecological and evolutionary processes of forest communities.

BACKGROUND: Woody plants (trees and shrubs) play an important role in terrestrial ecosystems, but their size and longevity make them difficult subjects for traditional experiments. In the last 20 years functional-structural plant models (FSPMs) have evolved: they consider the interplay between plant modular structure, the immediate environment and internal functioning. However, computational constraints and data deficiency have long been limiting factors in a broader application of FSPMs, particularly at the scale of forest communities. Recently, terrestrial laser scanning (TLS), has emerged as an invaluable tool for capturing the 3-D structure of forest communities, thus opening up exciting opportunities to explore and predict forest dynamics with FSPMs. SCOPE: The potential synergies between TLS-derived data and FSPMs have yet to be fully explored. Here, we summarize recent developments in FSPM and TLS research, with a specific focus on woody plants. We then evaluate the emerging opportunities for applying FSPMs in an ecological and evolutionary context, in light of TLS-derived data, with particular consideration of the challenges posed by scaling up from individual trees to whole forests. Finally, we propose guidelines for incorporating TLS data into the FSPM workflow to encourage overlap of practice amongst researchers. CONCLUSIONS: We conclude that TLS is a feasible tool to help shift FSPMs from an individual-level modelling technique to a community-level one. The ability to scan multiple trees, of multiple species, in a short amount of time, is paramount to gathering the detailed structural information required for parameterizing FSPMs for forest communities. Conventional techniques, such as repeated manual forest surveys, have their limitations in explaining the driving mechanisms behind observed patterns in 3-D forest structure and dynamics. Therefore, other techniques are valuable to explore how forests might respond to environmental change. A robust synthesis between TLS and FSPMs provides the opportunity to virtually explore the spatial and temporal dynamics of forest communities.

A study of crown development mechanisms using a shoot-based tree model and segmented terrestrial laser scanning data.

Background and Aims: Functional-structural plant models (FSPMs) allow simulation of tree crown development as the sum of modular (e.g. shoot-level) responses triggered by the local environmental conditions. The actual process of space filling by the crowns can be studied. Although the FSPM simulations are at organ scale, the data for their validation have usually been at more aggregated levels (whole-crown or whole-tree). Measurements made by terrestrial laser scanning (TLS) that have been segmented into elementary units (internodes) offer a phenotyping tool to validate the FSPM predictions at levels comparable with their detail. We demonstrate the testing of different formulations of crown development of Scots pine trees in the LIGNUM model using segmented TLS data. Methods: We made TLS measurements from four sample trees growing in a forest on a relatively poor soil from sapling size to mature stage. The TLS data were segmented into internodes. The segmentation also produced information on whether needles were present in the internode. We applied different formulations of crown development (flushing of buds and length of growth of new internodes) in LIGNUM. We optimized the parameter values of each formulation using genetic algorithms to observe the best fit of LIGNUM simulations to the measured trees. The fitness function in the estimation combined both tree-level characteristics (e.g. tree height and crown length) and measures of crown shape (e.g. spatial distribution of needle area). Key Results: Comparison of different formulations against the data indicates that the Extended Borchert-Honda model for shoot elongation works best within LIGNUM. Control of growth by local density in the crown was important for all shoot elongation formulations. Modifying the number of lateral buds as a function of local density in the crown was the best way to accomplish density control. Conclusions: It was demonstrated how segmented TLS data can be used in the context of a shoot-based model to select model components.

Multi-objective optimization shapes ecological variation.

Ecological systems contain a huge amount of quantitative variation between and within species and locations, which makes it difficult to obtain unambiguous verification of theoretical predictions. Ordinary experiments consider just a few explanatory factors and are prone to providing oversimplified answers because they ignore the complexity of the factors that underlie variation. We used multi-objective optimization (MO) for a mechanistic analysis of the potential ecological and evolutionary causes and consequences of variation in the life-history traits of a species of moth. Optimal life-history solutions were sought for environmental conditions where different life stages of the moth were subject to predation and other known fitness-reducing factors in a manner that was dependent on the duration of these life stages and on variable mortality rates. We found that multi-objective optimal solutions to these conditions that the moths regularly experience explained most of the life-history variation within this species. Our results demonstrate that variation can have a causal interpretation even for organisms under steady conditions. The results suggest that weather and species interactions can act as underlying causes of variation, and MO acts as a corresponding adaptive mechanism that maintains variation in the traits of organisms.

Delayed induced changes in the biochemical composition of host plant leaves during an insect outbreak.

In birch, Betula pubescens, herbivore-induced delayed induced resistance (DIR) of defoliated trees may cause a strong reduction in the potential fecundity of a geometrid folivore Epirrita autumnata. In this study, we examined the biochemical basis of DIR in birch leaves during a natural outbreak of E. autumnata. A set of experimental trees was defoliated at four sites by wild larvae in the peak year of the outbreak, whereas control trees were protected from defoliation by spraying with an insecticide. The biochemical composition of leaves was analysed in the following year and, although the DIR response was weak during this outbreak, causing less than a 20% reduction in the potential fecundity of E. autumnata, some consistent relationships between defoliation, biochemistry and pupal mass of E. autumnata suggested a general biochemical basis for the defoliation-induced responses in birch leaves. Total concentrations of nitrogen, sugars and acetone-insoluble residue (e.g. cell wall polysaccharides, cell-wall-bound phenolics, protein, starch, lignin and hemicellulose) were consistently lower, and total concentrations of phenolics, especially of gallotannins and soluble proanthocyanidins, were higher in the leaves of trees defoliated in the previous year than in those protected from defoliation. The capacity of tannins to precipitate proteins correlated with contents of gallotannins, and was highest in defoliated trees. The pupal mass of E. autumnata showed a strong, positive correlation with concentrations of nitrogen and sugars, and a negative correlation with the acetone-insoluble residue and gallotannins in foliage. Correlations with other measured biochemical traits were weak. The correlation coefficients between biochemical traits and pupal mass consistently had similar signs for both defoliated and insecticide-sprayed trees, suggesting that variation in leaf quality due to defoliation in the previous year was based on similar biochemical traits as variation for other reasons. We suggest that DIR is associated with reduced growth activity of leaves, and may be seen as a delay in the biochemical maturation of leaves in defoliated trees. This explains the high concentration of gallotannins in defoliated trees, a characteristic feature of young leaves. However, the lower content of nitrogen and the higher content of soluble proanthocyanidins in defoliated trees are traits usually characterising mature, not young, leaves, indicating defoliation-induced changes in chemistry in addition to modified leaf age. Our results emphasise the importance of understanding the natural changes in chemistry during leaf maturation when interpreting defoliation-induced changes in leaf biochemistry.

How to derive biological information from the value of the normalization constant in allometric equations.

Allometric equations are widely used in many branches of biological science. The potential information content of the normalization constant b in allometric equations of the form Y = bX(a) has, however, remained largely neglected. To demonstrate the potential for utilizing this information, I generated a large number of artificial datasets that resembled those that are frequently encountered in biological studies, i.e., relatively small samples including measurement error or uncontrolled variation. The value of X was allowed to vary randomly within the limits describing different data ranges, and a was set to a fixed theoretical value. The constant b was set to a range of values describing the effect of a continuous environmental variable. In addition, a normally distributed random error was added to the values of both X and Y. Two different approaches were then used to model the data. The traditional approach estimated both a and b using a regression model, whereas an alternative approach set the exponent a at its theoretical value and only estimated the value of b. Both approaches produced virtually the same model fit with less than 0.3% difference in the coefficient of determination. Only the alternative approach was able to precisely reproduce the effect of the environmental variable, which was largely lost among noise variation when using the traditional approach. The results show how the value of b can be used as a source of valuable biological information if an appropriate regression model is selected.

Toward extension of a single tree functional-structural model of Scots pine to stand level: effect of the canopy of randomly distributed, identical trees on development of tree structure.

Functional-structural plant growth models (FSPMs) combine the description of the structure of plants and the resource acquisition and partitioning at a detailed architectural level. They offer a means to study tree and stand development on the basis of a structurally accurate description that combines resource capture at the same level of detail. We describe here how a 'shoot-based' individual tree model, LIGNUM of Scots pine (Pinus sylvestris L.) has been applied to a group of identical trees (forest). The model has been applied to isolated trees and saplings growing in forest gaps. First, we present the LIGNUM model and the changes necessary for simulation of a forest instead of individual trees. LIGNUM derives tree growth on the basis of a process-based model of tree carbon balance and the architectural development of the 3-D tree crown. The time step is 1 year. We realised the forest as consisting of individual Scots pine trees on a plot 17 × 17 m, but simplified the stand description by simulating the growth of only one tree in the middle of the plot and assumed that the other trees were identical to it at all times. The model produced results that are comparable with observations made in real Scots pine trees and tree stands in Finland. The simulations with variable values of the parameters controlling the foliage-sapwood relationship, amount of sapwood required below a point in a branch or a stem, and the senescence of sapwood showed how growth declines when the sapwood requirement in the branches and stem was high. In this case, the proportion of resources allocated to the needles became small and the needle mass was low.

Testing the enemies hypothesis in forest stands: the important role of tree species composition.

Numerous studies conducted in agro-ecosystems support the enemies hypothesis, which states that predators and parasites are more efficient in controlling pest densities in polycultures than in monocultures. Few similar studies, however, have been conducted in forest ecosystems, and we do not yet have evidence as to whether the enemies hypothesis holds true in forests. In a 2-year study, we investigated whether the survival of autumnal moth ( Epirrita autumnata) larvae and pupae differs between silver birch monocultures and two-species mixtures of birch with black alder, Norway spruce and Scots pine. We placed young larvae on birch saplings and monitored their survival until the end of the larval period, when we checked whether they had been parasitized. After the larvae had pupated, pupal survival was tested in a field trial. In 2002, the larvae disappeared earlier and their overall survival was lower in birch-pine mixtures than in other stand types. In 2003, survival probability was lowest in birch-pine stands only during the first week and there were no differences between stands in overall survival. Larval parasitism was not affected by tree species composition. Pupal weight and pupal survival were likewise not affected by stand type. Among the predators, wood ants were more abundant on birches growing in birch-pine mixtures than in other stand types probably because colonies of myrmecophilic aphids were common on pines. In contrast, spider numbers did not differ between stand types. Ant exclusion by means of a glue ring around the birch trunk increased larval survival, indicating that ants are important predators of the autumnal moth larvae; differences in larval survival between stands are probably due to differential ant predation. Our results provide only partial support for the enemies hypothesis, and suggest that it is both tree species composition and species diversity which affect herbivore survival and predation.

Testing the allometric scaling laws.

Allometric scaling laws have received increasing attention due to the recent theoretical advancements. However, existing evidence suggests that the scaling relationships may vary a lot without much consistency, which poses a challenge to the applicability of general theories. In this report, I demonstrate that much of the discrepancy may be an artefact caused by the limited use of methods for estimating the parameters in the allometric scaling equations. I suggest alternative procedures that can be utilized to avoid biased interpretations. The comments are largely applicable to any research that involves parameterization of equations.

Spatial responses of two herbivore groups to a geometrid larva on mountain birch.

Direct or plant-mediated interactions between herbivores may modify their spatial distribution among and within plants. In this study, we examined the effect of a leaf-chewing geometrid, the autumnal moth (Epirrita autumnata), on two different herbivore groups, leaf rolling Deporaus betulae weevils and Eriocrania spp. leafminers, both feeding on mountain birch (Betula pubescens ssp. czerepanovii). The exact locations of herbivores within tree canopies were mapped during three successive summers. In the first 2 years, some trees were artificially colonized by eggs of the autumnal moth to induce both rapid and delayed resistance in the foliage. The natural infection levels of the pathogenic rust fungus (Melampsoridium betulinum), potentially involved in species interactions, were also recorded. At the level of the whole tree, the density of D. betulae leaf rolls was lower in trees infested by the autumnal moth in the same year. However, the feeding locations within trees were partly segregated: D. betulae favoured shadier branches, while E. autumnata preferred the sunny parts of the canopy. The autumnal moth did not affect current- or following-year density of leafminers at the tree or branch level. Trees infected by rust had fewer leafminers in the same summer than noninfected trees. There were no interaction effects between defoliation by the autumnal moth and rust infection, and no delayed effects on the abundance of other herbivores the following year. Taken together, these findings suggest that the autumnal moth has a negative, partially plant-mediated impact on D. betulae, and can reduce the extent of current-year defoliation caused by D. betulae. This may be beneficial for the mountain birch, since the greater part of D. betulae damage occurs around or after the end of the larval period of the autumnal moth, which may be a critical time for tree recovery after moth outbreaks.

Performance of the cyclic autumnal moth, Epirrita autumnata, in relation to birch mast seeding.

The mast depression hypothesis has been put forward to explain the 9- to 10-year population cycle of the autumnal moth (Epirrita autumnata; Lepidoptera: Geometridae) in northern Fennoscandia. We analysed long-term data from Finnish Lapland in order to evaluate the critical assumption of the mast depression hypothesis: that better individual performance of herbivores, followed by high annual growth rate of populations, occurs in the year following mast seeding of the host, the mountain birch ( Betula pubescens ssp. czerepanovii). Since mast seeding has been suggested to occur at the expense of chemical defence against herbivores, we bioassayed the quality of birch leaves from the same trees by means of yearly growth trials with autumnal moth larvae. We also measured the size of wild adults as a determinant of potential fecundity of the species in different years. The relative growth rate of larvae was poorer in post-mast years compared to other years, rather than better as assumed by the hypothesis. Conversely, a slight indication of the increase in potential fecundity was observed due to the somewhat larger adult size in post-mast years. Population growth rate estimates, however, showed that the increase in fecundity would have to be much higher to facilitate population increase towards a cyclic peak with outbreak density. Accordingly, our two data sets do not support the assumption of a higher annual growth rate in autumnal moth populations subsequent to mast seeding of the host, thereby contradicting the predictions of the mast depression hypothesis. Temperatures, when indexed by the North Atlantic Oscillation and accumulated thermal sums, were observed to correlate with the abundance or rate of population change of the autumnal moth. The factors underlying the regular population cycles of the autumnal moth, however, remain unidentified. Overall, we suggest that the causal agents in cyclic insect population dynamics should be clarified by field experimentation, since trophic interactions are complex and are further modified by abiotic factors such as climate.