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1.
Curr Microbiol ; 78(10): 3667-3673, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34382101

RESUMEN

A novel actinobacterial strain, Gram-positive, anaerobic, non-motile, and rod-shaped, designated KGMB02528T, was isolated from healthy human feces. Cells of strain KGMB02528T grew optimally at pH 7.0 and 37 °C and in the presence of 0% (w/v) NaCl. Based on 16S rRNA gene sequence similarity, strain KGMB04489T belonged to the genus Collinsella and was most closely related to Collinsella aerofaciens DSM 17552T (95.8%). The DNA G + C content was 58.0 mol%. The major cellular fatty acids (> 10%) were C16:0 DMA, C16:0 ALDE, C14:0 DMA, and C12:0. The predominant end product of fermentation was acetic acid. The cell wall peptidoglycan of strain KGMB02528T contained alanine, glutamic acid, and lysine, while diaminopimelic acid was not detected. The polar lipids were composed of two unidentified phospholipids and unidentified nine glycolipids. Based on the phenotypic, chemotaxonomic, and phylogenetic properties, strain KGMB02528T represents a novel species of the genus Collinsella, for which the name Collinsella acetigenes sp. nov. is proposed. The type strain is Collinsella acetigenes KGMB02528T (= KCTC 15847T = CCUG 73987T). The description of the genus Collinsella is emended to accommodate the new species.The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Collinsella acetigenes KGMB02528T is MT117838. The whole-genome shotgun BioProject number is PRJNA623694 with the accession number JABBCP000000000.


Asunto(s)
Ácidos Grasos , Fosfolípidos , Actinobacteria , Anaerobiosis , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Heces , Humanos , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
2.
Int J Syst Evol Microbiol ; 70(5): 3134-3138, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32375953

RESUMEN

Paenibacillus is one of the genera that has high species diversity and Paenibacillus polymyxa, the type species of the genus, is mainly isolated from plant-associated environments. Among the plant-associated species, Paenibacillus jamilae B.3T (=CECT 5266T=DSM 13815T=KACC 10925T=KCTC 13919T) was proposed to be a novel species according to 16S rRNA gene similarity and DNA-DNA relatedness with related species, including Paenibacillus polymyxa. Nevertheless, in the description of Paenibacillus jamilae the used strain of Paenibacillus polymyxa was not the type strain of this species. In this work we found that the type strains of both species showed 16S rRNA gene similarity of 99.6 %. Therefore, in this study, we sequenced the genome of Paenibacillus jamilae KACC 10925T and compared it with those of the type strain of Paenibacillus polymyxa ATCC 842T and other phylogenetically related species. Genome relatedness value calculated by DNA-DNA hybridization between type strains of Paenibacillus polymyxa and Paenibacillus jamilae was 73.5 %, which is higher than the threshold value (70 %). For more objective and repeatable results of genome relatedness, we analysed an average nucleotide identity (ANI) between two strains. Our results showed that ANI value between the type strains of Paenibacillus jamilae and Paenibacillus polymyxa is 98.5 %, a phylogenetic distance also higher than the threshold values (95~96 %). These values were proposed by Yoon et al. (2017). In addition, their phylogenetic distance based on 92 bacterial core genes is highly close compared to other species. These mean that Paenibacillus jamilae and Paenibacillus polymyxa should be reclassified as a single species. Based on the results from genomic level comparison as well as reexamination results of physiological and chemotaxonomic features, we propose reclassification of Paenibacillus jamilae as a later heterotypic synonym of Paenibacillus polymyxa.


Asunto(s)
Paenibacillus polymyxa/clasificación , Paenibacillus/clasificación , Filogenia , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Genes Bacterianos , Genómica , Hibridación de Ácido Nucleico , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
3.
Int J Syst Evol Microbiol ; 70(3): 2059-2065, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-32100703

RESUMEN

An obligately anaerobic, Gram-stain-positive, non-motile and coccoid- or oval-shaped bacterium, designated strain KGMB01111T, was isolated from faeces from a healthy Korean. Comparative analysis of 16S rRNA gene sequences indicated that KGMB01111T was closely related to Ruminococcus gauveauii CCRI-16110T (93.9 %) and Blautia stercoris GAM6-1T (93.7 %), followed by Clostridium nexile DSM 1787T (93.5 %), Blautia producta ATCC 27340T (93.4 %), Blautia hydrogenotrophica DSM 10507T (93.1 %) and Blautia coccoides ATCC 29236T (93.1 %) within the family Lachnospiraceae (Clostridium rRNA cluster XIVa). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that KGMB01111T formed a separate branch with species in the genus Blautia. The major cellular fatty acids (>10.0 %) were C16 : 0 and C18 : 1 cis 9 dimethyl acetal (DMA), and the major polar lipids were aminophospholipids and lipids. KGMB01111T contained meso-diaminopimelic acid in cell-wall peptidoglycan. The predominant end product of fermentation produced by KGMB01111T was acetic acid. Based on the whole-genome sequence, the DNA G+C content of the isolate was 44.7 mol%. On the basis of the phenotypic, chemotaxonomic and phylogenetic characteristics, KGMB01111T represents a novel species within the genus Blautia for which the name Blautia faecicola sp. nov. is proposed. The type strain is KGMB01111T (=KCTC 15706T=DSM 107827T).


Asunto(s)
Clostridiales/clasificación , Heces/microbiología , Filogenia , Ácido Acético/metabolismo , Técnicas de Tipificación Bacteriana , Composición de Base , Clostridiales/aislamiento & purificación , ADN Bacteriano/genética , Ácido Diaminopimélico/química , Ácidos Grasos/química , Fermentación , Humanos , Peptidoglicano/química , Fosfolípidos/química , ARN Ribosómico 16S/genética , República de Corea , Análisis de Secuencia de ADN
4.
Int J Syst Evol Microbiol ; 70(3): 1684-1690, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31913113

RESUMEN

A novel actinobacterial strain, designated KGMB04484T, was isolated from healthy human faeces sampled in the Republic of Korea. Cells of strain KGMB04484T were strictly anaerobic, Gram-stain-positive, catalase-positive, oxidase-negative, non-motile coccobacilli and formed tiny colonies on Columbia agar with 5 % horse blood. On the basis of 16S rRNA gene sequence similarity, strain KGMB04484T was affiliated with the genus Senegalimassilia in the family Coriobacteriaceae and its closest relative was Senegalimassilia anaerobia JC110T (96.28 % sequence similarity). The DNA G+C content of strain KGMB04484T was 61.2 mol%. The polar lipids contained diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid, an unidentified aminolipid and three unidentified glycolipids. The predominant cellular fatty acids (>10 %) of strain KGMB04484T were C14 : 0, C16 : 0 and C16 : 0 dimethyl acetal. Based on its phylogenetic, physiological and chemotaxonomic characteristics, strain KGMB04484T is considered to represent a novel species within the genus Senegalimassilia, for which the name Senegalimassilia faecalis sp. nov. is proposed. The type strain is KGMB04484T (=KCTC 15721T=CCUG 72347T).


Asunto(s)
Actinobacteria/clasificación , Heces/microbiología , Filogenia , Actinobacteria/aislamiento & purificación , Anaerobiosis , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Glucolípidos/química , Humanos , Fosfolípidos/química , ARN Ribosómico 16S/genética , República de Corea , Análisis de Secuencia de ADN
5.
Angew Chem Int Ed Engl ; 59(51): 22994-22998, 2020 12 14.
Artículo en Inglés | MEDLINE | ID: mdl-32844539

RESUMEN

Rhizolutin (1) was discovered as a natural product of ginseng-rhizospheric Streptomyces sp. WON17. Its structure features an unprecedented 7/10/6-tricyclic dilactone carbon skeleton composed of dimethylcyclodecatriene flanked by a 7-membered and a 6-membered lactone ring based on spectroscopic analysis. During an unbiased screening of natural product libraries, this novel compound was found to dissociate amyloid-ß (Aß) plaques and tau tangles, which are key pathological hallmarks of Alzheimer's disease (AD). Rhizolutin treatment of APP/PS1 double transgenic mice with AD significantly dissociated hippocampal plaques. In vitro, rhizolutin substantially decreased Aß-induced apoptosis and inflammation in neuronal and glial cells. Our findings introduce a unique chemical entity that targets Aß and tau concurrently by mimicking misfolded protein clearance mechanisms of immunotherapy, which is prominently investigated in clinical trials.


Asunto(s)
Enfermedad de Alzheimer/tratamiento farmacológico , Péptidos beta-Amiloides/antagonistas & inhibidores , Apoptosis/efectos de los fármacos , Inflamación/tratamiento farmacológico , Fármacos Neuroprotectores/farmacología , Proteínas tau/antagonistas & inhibidores , Enfermedad de Alzheimer/patología , Péptidos beta-Amiloides/metabolismo , Animales , Inflamación/patología , Ratones , Ratones Transgénicos , Neuroglía/efectos de los fármacos , Neuronas/efectos de los fármacos , Fármacos Neuroprotectores/química , Fármacos Neuroprotectores/aislamiento & purificación , Placa Amiloide/tratamiento farmacológico , Placa Amiloide/patología , Agregado de Proteínas/efectos de los fármacos , Streptomyces/química , Proteínas tau/metabolismo
6.
Int J Syst Evol Microbiol ; 69(12): 3672-3675, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31663499

RESUMEN

Members of the genus Weissella are mostly found in fermented plant material. Among the Weissella species, two species, Weissella thailandensis and Weissella jogaejeotgali, were isolated from foods fermented from marine animals. The two species showed a high level of 16S rRNA gene similarity (99.39 %), whereas they exhibited a moderate level of DNA-DNA hybridization relatedness (63.9 %) in an earlier study. In this study, we determined the whole genome sequence of W. thailandensis KCTC 3751T and compared it to those of W. jogaejeotgali FOL01T and other related species. The average nucleotide identity value between the type strains of W. thailandensis and W. jogaejeotgali was 96.4 %, which is clearly higher than the cut-off proposed for bacterial species. We, therefore, propose to reclassify W. jogaejeotgali as a later heterotypic synonym of W. thailandensis.


Asunto(s)
Alimentos Fermentados/microbiología , Filogenia , Weissella/clasificación , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Tailandia
7.
Int J Syst Evol Microbiol ; 69(12): 3824-3829, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31511127

RESUMEN

A novel Gram-stain-negative and strictly anaerobic bacterial strain, designated KGMB02408T, was isolated from faeces of a healthy human in the Republic of Korea. The isolate was characterized as non-motile, non-spore-forming and rod-shaped (variable in length). The results of phylogenetic analysis based on 16S rRNA gene sequences revealed that strain KGMB02408T belonged to the genus Bacteroides and was most closely related to Bacteroides faecichinchillae JCM 17102T (=KCTC 15666T; 96.5 %). Based on its whole-genome sequence, the DNA G+C content of the isolate was 39.5 mol%. The average nucleotide identity value between strain KGMB02408T and related species, B. faecichinchillae JCM 17102T, was 93.8 %. The major cellular fatty acids (>10 %) of the isolate were anteiso-C15 : 0, iso-C17 : 0-OH, summed feature 11 (iso-C17 : 0-OH and/or C18 : 2 DMA) and C16 : 0. Menaquinone-8 (28.6 %) and menaquinone-10 (47.1 %) were detected as the major respiratory quinones in the isolate. The major end products of glucose fermentation produced by strain KGMB02408T were lactic acid, acetic acid and formic acid. Based on its phylogenetic, phenotypic and chemotaxonomic characteristics, strain KGMB02408T represents a novel species of the genus Bacteroides in the family Bacteroidaceae. The type strain is KGMB02408T (=KCTC 15687T=DSM 107828T).


Asunto(s)
Bacteroides/clasificación , Heces/microbiología , Filogenia , Técnicas de Tipificación Bacteriana , Bacteroides/aislamiento & purificación , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Humanos , ARN Ribosómico 16S/genética , República de Corea , Análisis de Secuencia de ADN , Vitamina K 2/análogos & derivados , Vitamina K 2/química
8.
Int J Syst Evol Microbiol ; 69(8): 2323-2328, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-31135332

RESUMEN

A novel actinobacterial strain, designated KGMB04489T, was isolated from the faeces of a healthy Korean. Cells of the strain were strictly anaerobic, Gram-stain-positive and short-rod-shaped. On the basis of 16S rRNA gene sequence similarity, strain KGMB04489T belonged to the genus Olsenella and was most closely related to Olsenella scatoligenes SK9K4T (94.3 %), Olsenella uli ATCC 49627T (93.5 %), Olsenella umbonata lac31T (93.4 %) and Olsenella profusa D315A-29T (93.3 %). The major end product was lactic acid. The DNA G+C content was 65.5 mol%. The major cellular fatty acids of strain KGMB04489T were C18 : 1cis9, C18 : 1cis9 DMA and C16 : 0. Strain KGMB04489T contained meso-diaminopimelic acid as the diamino acid in the peptidoglycan. The polar lipids consisted of an unidentified phospholipid, six unidentified glycolipids and an unidentified lipid. Based on phylogenetic, physiological and chemotaxonomic characteristics, strain KGMB04489T is considered to represent a novel species within the genus Olsenella, for which the name Olsenellafaecalis sp. nov. is proposed. The type strain is KGMB04489T (=KCTC 15699T=CCUG 72345T).


Asunto(s)
Actinobacteria/clasificación , Heces/microbiología , Filogenia , Actinobacteria/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , Pared Celular/química , ADN Bacteriano/genética , Ácido Diaminopimélico/química , Ácidos Grasos/química , Glucolípidos/química , Humanos , Peptidoglicano/química , Fosfolípidos/química , ARN Ribosómico 16S/genética , República de Corea , Análisis de Secuencia de ADN
9.
Int J Syst Evol Microbiol ; 68(9): 2712-2721, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29969090

RESUMEN

A polyphasic study was undertaken to establish the taxonomic status of a Blastococcus strain isolated from an extreme hyper-arid Atacama Desert soil. The isolate, strain P6T, was found to have chemotaxonomic and morphological properties consistent with its classification in the genus Blastococcus. It was shown to form a well-supported branch in the Blastococcus 16S rRNA gene tree together with the type strains of Blastococcus capsensis and Blastococcus saxobsidens and was distinguished from the latter, its close phylogenetic neighbour, by a broad range of phenotypic properties. The draft genome sequence of isolate P6T showed 84.6 % average nucleotide identity, 83.0 % average amino acid identity and a digital DNA-DNA hybridisation value of 27.8 % in comparison with the genome sequence of B. saxobsidens DSM 44509T, values consistent with its assignment to a separate species. Based on these data it is proposed that isolate P6T (NCIMB 15090T=NRRL B-65468T) be assigned to the genus Blastococcus as Blastococcus atacamensis sp. nov. Analysis of the whole genome sequence of B. atacamensis P6T, with 3778 open reading frames and a genome size of 3.9 Mb showed the presence of genes and gene clusters that encode for properties that reflect its adaptation to the extreme environmental conditions that prevail in Atacama Desert soils.


Asunto(s)
Actinomycetales/clasificación , Clima Desértico , Filogenia , Microbiología del Suelo , Actinomycetales/genética , Actinomycetales/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , Chile , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Fosfolípidos/química , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
10.
Molecules ; 23(6)2018 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-29799492

RESUMEN

LC/MS-based chemical profiling of a ginseng farm soil-derived actinomycete strain, Streptomyces sp. BYK1371, enabled the discovery of two new cyclic heptapeptides, depsidomycins B and C (1 and 2), each containing two piperazic acid units and a formyl group at their N-terminus. The structures of 1 and 2 were elucidated by a combination of spectroscopic and chemical analyses. These new compounds were determined to possess d-leucine, d-threonine, d-valine, and S-piperazic acid based on the advanced Marfey's method and a GITC (2,3,4,6-tetra-O-acetyl-ß-d-glucopyranosyl isothiocyanate) derivatization of their hydrolysates, followed by LC/MS analysis. Depsidomycins B and C displayed significant antimetastatic activities against metastatic breast cancer cells (MDA-MB-231).


Asunto(s)
Antineoplásicos/aislamiento & purificación , Oligopéptidos/aislamiento & purificación , Microbiología del Suelo , Streptomyces/química , Antineoplásicos/química , Antineoplásicos/farmacología , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Células Epiteliales/efectos de los fármacos , Células Epiteliales/patología , Granjas , Humanos , Isotiocianatos/química , Leucina/química , Leucina/aislamiento & purificación , Oligopéptidos/química , Oligopéptidos/farmacología , Panax/crecimiento & desarrollo , Piridazinas/química , Piridazinas/aislamiento & purificación , Estereoisomerismo , Streptomyces/metabolismo , Treonina/química , Treonina/aislamiento & purificación , Valina/química , Valina/aislamiento & purificación
11.
Int J Syst Evol Microbiol ; 67(11): 4515-4517, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28920843

RESUMEN

Lactobacillus bobalius, Lactobacillus kimchii and Lactobacillus paralimentarius belong to the genus Lactobacillus and show close phylogenetic relationships. In a previous study, L. bobalius and L. kimchii were proposed to be reclassified as later heterotypic synonyms of L. paralimentarius using high 16S rRNA gene sequence similarities (≥99.5 %) and DNA-DNA hybridization values (≥82 %). We determined high quality whole genome assemblies of the type strains of L. bobalius and L. kimchii, which were then compared with that of L. paralimentarius. Average nucleotide identity values among three genomes ranged from 91.4 to 92.3 % which are clearly below 95~96 %, the generally recognized cutoff value for bacterial species boundaries. On the basis of comparative genomic evidence, L. bobalius, L. kimchii, and L. paralimentarius should stand as separate species in the genus Lactobacillus. We therefore suggest rejecting the previous proposal to combine these three species into a single species.


Asunto(s)
Hibridación Genómica Comparativa , Lactobacillus/clasificación , Filogenia , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Hibridación de Ácido Nucleico , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
12.
Microb Ecol ; 74(1): 116-127, 2017 07.
Artículo en Inglés | MEDLINE | ID: mdl-28105510

RESUMEN

Chilas and Hunza areas, located in the Main Mantle Thrust and Main Karakoram Thrust of the Himalayas, host a range of geochemically diverse hot springs. This Himalayan geothermal region encompassed hot springs ranging in temperature from 60 to 95 °C, in pH from 6.2 to 9.4, and in mineralogy from bicarbonates (Tato Field), sulfates (Tatta Pani) to mixed type (Murtazaabad). Microbial community structures in these geothermal springs remained largely unexplored to date. In this study, we report a comprehensive, culture-independent survey of microbial communities in nine samples from these geothermal fields by employing a bar-coded pyrosequencing technique. The bacterial phyla Proteobacteria and Chloroflexi were dominant in all samples from Tato Field, Tatta Pani, and Murtazaabad. The community structures however depended on temperature, pH, and physicochemical parameters of the geothermal sites. The Murtazaabad hot springs with relatively higher temperature (90-95 °C) favored the growth of phylum Thermotogae, whereas the Tatta Pani thermal spring site TP-H3-b (60 °C) favored the phylum Proteobacteria. At sites with low silica and high temperature, OTUs belonging to phylum Chloroflexi were dominant. Deep water areas of the Murtazaabad hot springs favored the sulfur-reducing bacteria. About 40% of the total OTUs obtained from these samples were unclassified or uncharacterized, suggesting the presence of many undiscovered and unexplored microbiota. This study has provided novel insights into the nature of ecological interactions among important taxa in these communities, which in turn will help in determining future study courses in these sites.


Asunto(s)
Chloroflexi/aislamiento & purificación , Manantiales de Aguas Termales/microbiología , Proteobacteria/aislamiento & purificación , Bacterias Reductoras del Azufre/aislamiento & purificación , Chloroflexi/clasificación , Calor , Pakistán , Proteobacteria/clasificación , Bacterias Reductoras del Azufre/clasificación
13.
J Nat Prod ; 80(11): 2910-2916, 2017 11 22.
Artículo en Inglés | MEDLINE | ID: mdl-29090916

RESUMEN

Four new aminoglycolipids, deinococcucins A-D (1-4), were discovered from a Deinococcus sp. strain isolated from the gut of queen carpenter ants, Camponotus japonicus. The structures of deinococcucins A-D were elucidated as a combination of N-acetyl glucosamine, 2,3-dihydroxypropanoic acid, and an alkyl amine with a C16 or C17 hydrocarbon chain primarily based on 1D and 2D NMR and mass spectroscopic data. The exact location of the olefinic double bond in deinococcucins C and D (3 and 4) was assigned based on the liquid chromatography-mass spectroscopy data obtained after olefin metathesis. The absolute configurations of the N-acetyl glucosamine and 2,3-dihydroxy moieties were determined through gas chromatography-mass spectroscopy analysis of authentic samples and phenylglycine methyl ester-derivatized products, respectively. Deinococcucins A and C displayed significant induction of quinone reductase in murine Hepa-1c1c7 cells.


Asunto(s)
Hormigas/microbiología , Deinococcus/química , Glucolípidos/aislamiento & purificación , Animales , ADN Bacteriano , Microbioma Gastrointestinal , Glucolípidos/química , Estructura Molecular , Resonancia Magnética Nuclear Biomolecular , Filogenia
14.
Antonie Van Leeuwenhoek ; 110(9): 1133-1148, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28589342

RESUMEN

A polyphasic study was undertaken to establish the taxonomic status of Streptomyces strains isolated from hyper-arid Atacama Desert soils. Analysis of the 16S rRNA gene sequences of the isolates showed that they formed a well-defined lineage that was loosely associated with the type strains of several Streptomyces species. Multi-locus sequence analysis based on five housekeeping gene alleles showed that the strains form a homogeneous taxon that is closely related to the type strains of Streptomyces ghanaensis and Streptomyces viridosporus. Representative isolates were shown to have chemotaxonomic and morphological properties consistent with their classification in the genus Streptomyces. The isolates have many phenotypic features in common, some of which distinguish them from S. ghanaensis NRRL B-12104T, their near phylogenetic neighbour. On the basis of these genotypic and phenotypic data it is proposed that the isolates be recognised as a new species within the genus Streptomyces, named Streptomyces asenjonii sp. nov. The type strain of the species is KNN35.1bT (NCIMB 15082T = NRRL B-65050T). Some of the isolates, including the type strain, showed antibacterial activity in standard plug assays. In addition, MLSA, average nucleotide identity and phenotypic data show that the type strains of S. ghanaensis and S. viridosporus belong to the same species. Consequently, it is proposed that the former be recognised as a heterotypic synonym of the latter and an emended description is given for S. viridosporus.


Asunto(s)
Filogenia , Microbiología del Suelo , Streptomyces/clasificación , Streptomyces/genética , Aminoácidos/metabolismo , Antibacterianos/farmacología , Chile , Clima Desértico , Ácido Diaminopimélico/química , Ácidos Grasos/química , Genoma Bacteriano/genética , Tipificación de Secuencias Multilocus , Fenotipo , Fosfolípidos/química , ARN Ribosómico 16S/genética , Especificidad de la Especie , Streptomyces/química , Streptomyces/efectos de los fármacos , Azúcares/metabolismo
15.
J Nat Prod ; 79(7): 1886-90, 2016 07 22.
Artículo en Inglés | MEDLINE | ID: mdl-27367579

RESUMEN

A new secondary metabolite, actinomadurol (1), was isolated along with the known compound JBIR-65 (2) from a rare actinomycete, Actinomadura strain KC 191. The structure of 1 was established as a rare member of the bacterial C-19 norditerpenoid class by NMR data and ECD calculations. The absolute configuration of 2, which was previously reported without stereochemical analysis, was determined by using the modified Mosher's method and ECD calculations. Actinomadurol (1) exhibited potent antibacterial activity against pathogenic strains, such as Staphylococcus aureus, Kocuria rhizophila, and Proteus hauseri (MIC = 0.39-0.78 µg/mL), whereas JBIR-65 (2) showed no antibacterial activity.


Asunto(s)
Actinomycetales/química , Antibacterianos/aislamiento & purificación , Antibacterianos/farmacología , Diterpenos/aislamiento & purificación , Diterpenos/farmacología , Actinobacteria , Antibacterianos/química , Diterpenos/química , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Resonancia Magnética Nuclear Biomolecular , Staphylococcus aureus/efectos de los fármacos
16.
J Environ Manage ; 166: 131-9, 2016 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-26496843

RESUMEN

Biochar is gaining attention as a potential soil amendment to remediate and revitalize the contaminated soils. Simultaneous effects of biochar on metals mobility, microbial abundance, bacterial diversity and carbon storage in soil are scarcely addressed. This study assessed the effect of biochars on metal mobility, microbial abundance, bacterial community, and carbon storage in an agricultural soil contaminated with heavy metals. Biochars derived from soybean stover at 300 and 700 °C (S-BC300 and S-BC700, respectively) and pine needles at the same temperatures (P-BC300 and P-BC700, respectively) were used. A maximum reduction of Pb mobility by 95% was observed from a soil treated with S-BC700, associated with precipitation of chloropyromorphite and hydroxylpyromorphite. In contrast, As was desorbed from soil particles because of P competition. The abundance of Gram-positive and negative bacteria, fungi, actinomycetes, and arbuscular mycorrhizal fungi increased in the soils treated with biochar produced at 300 °C, possibly due to the high dissolved organic and active organic carbons. Microbial abundance in the soils treated with S-BC700 and P-BC700 was constant due to the existence of fixed or non-labile carbon. Changes to bacterial communities in the biochar-treated soils depended on feedstock type and pyrolysis temperature. Actinobacteria substantially increased whereas Acidobacteria and Chloroflexi decreased in the biochar-treated soils. The non-labile carbon fraction was ∼25 fold higher in the biochar-treated soil than the control soil, indicating long-term carbon storage.


Asunto(s)
Carbón Orgánico/química , Glycine max/química , Metales Pesados/aislamiento & purificación , Pinus/química , Microbiología del Suelo , Contaminantes del Suelo/aislamiento & purificación , Suelo/normas , Agricultura , Arsénico/análisis , Arsénico/aislamiento & purificación , Bacterias/efectos de los fármacos , Carbono/análisis , Hongos/efectos de los fármacos , Plomo/análisis , Plomo/aislamiento & purificación , Metales Pesados/análisis , Hojas de la Planta/química , Suelo/química , Contaminantes del Suelo/análisis , Temperatura
17.
Antonie Van Leeuwenhoek ; 108(3): 783-91, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26187116

RESUMEN

A Streptomyces strain isolated from a mangrove sediment was classified using a polyphasic approach. The organism, isolate GY1(T), was found to have chemical and morphological properties typical of members of the genus Streptomyces. The isolate was shown to form a distinct phyletic line within the Streptomyces radiopugnans 16S rRNA gene subclade and to be closely related to the type strain of Streptomyces fenhuangensis (98.7 % similarity). It is also closely related to the type strain of Streptomyces bakulensis which was also closely related to members of the Streptomyces glaucosporus 16S rRNA gene subclade. Isolate GY1(T) was distinguished readily from the S. barkulensis type strain and from species classified in the S. radiopugnans clade using a combination of morphological and physiological properties, including a requirement for seawater for growth. Based on the genotypic and phenotypic data, it is proposed that isolate GY1(T) (=NCIMB 14980(T), NRRL B-69296(T)) be classified in the genus Streptomyces as Streptomyces mangrovi sp. nov.


Asunto(s)
Sedimentos Geológicos , Streptomyces/clasificación , Streptomyces/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Microscopía Electrónica de Rastreo , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Agua de Mar/microbiología , Análisis de Secuencia de ADN , Streptomyces/genética , Streptomyces/fisiología , Humedales
18.
Microb Ecol ; 68(2): 271-83, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24682309

RESUMEN

The effects of water-saving irrigation on emissions of greenhouse gases and soil prokaryotic communities were investigated in an experimental rice field. The water layer was kept at 1-2 cm in the water-saving (WS) irrigation treatment and at 6 cm in the continuous flooding (CF) irrigation treatment. WS irrigation decreased CH(4) emissions by 78 % and increased N(2)O emissions by 533 %, resulting in 78 % reduction of global warming potential compared to the CF irrigation. WS irrigation did not affect the abundance or phylogenetic distribution of bacterial/archaeal 16S rRNA genes and the abundance of bacterial/archaeal 16S rRNAs. The transcript abundance of CH(4) emission-related genes generally followed CH(4) emission patterns, but the difference in abundance between mcrA transcripts and amoA/pmoA transcripts best described the differences in CH(4) emissions between the two irrigation practices. WS irrigation increased the relative abundance of 16S rRNAs and functional gene transcripts associated with Anaeromyxobacter and Methylocystis spp., suggesting that their activities might be important in emissions of the greenhouse gases. The N(2)O emission patterns were not reflected in the abundance of N(2)O emission-related genes and transcripts. We showed that the alternative irrigation practice was effective for mitigating greenhouse gas emissions from rice fields and that it did not affect the overall size and structure of the soil prokaryotic community but did affect the activity of some groups.


Asunto(s)
Riego Agrícola/métodos , Efecto Invernadero , Metano/metabolismo , Óxido Nitroso/metabolismo , Oryza , Microbiología del Suelo , Archaea/clasificación , Archaea/crecimiento & desarrollo , Bacterias/clasificación , Bacterias/crecimiento & desarrollo , Genes Arqueales , Genes Bacterianos , Filogenia , ARN Ribosómico 16S/genética , República de Corea , Estaciones del Año , Análisis de Secuencia de ADN , Agua
19.
Mar Drugs ; 12(4): 2326-40, 2014 Apr 22.
Artículo en Inglés | MEDLINE | ID: mdl-24759001

RESUMEN

Three new secondary metabolites, amycofuran (1), amycocyclopiazonic acid (2), and amycolactam (3), were isolated from the sponge-associated rare actinomycete Amycolatopsis sp. Based on combined spectroscopic analyses, the structures of 1-3 were determined to be a new benzofuran glycoside and new indole alkaloids related to cyclopiazonic acids, a class that has previously only been reported in fungi. The absolute configurations of 1 and 3 were deduced by ECD calculations, whereas that of 2 was determined using the modified Mosher method. Amycolactam (3) displayed significant cytotoxicity against the gastric cancer cell line SNU638 and the colon cancer cell line HCT116.


Asunto(s)
Actinomycetales/metabolismo , Glicósidos/farmacología , Alcaloides Indólicos/farmacología , Poríferos/microbiología , Actinomycetales/aislamiento & purificación , Animales , Antineoplásicos/química , Antineoplásicos/aislamiento & purificación , Antineoplásicos/farmacología , Benzofuranos/química , Benzofuranos/aislamiento & purificación , Benzofuranos/farmacología , Línea Celular Tumoral , Ensayos de Selección de Medicamentos Antitumorales , Glicósidos/química , Glicósidos/aislamiento & purificación , Células HCT116 , Humanos , Alcaloides Indólicos/química , Alcaloides Indólicos/aislamiento & purificación , Indoles/química , Indoles/aislamiento & purificación , Indoles/farmacología , Pirrolidinonas/química , Pirrolidinonas/aislamiento & purificación , Pirrolidinonas/farmacología , Metabolismo Secundario
20.
Front Nutr ; 11: 1302093, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38435094

RESUMEN

Personalized probiotic regimens, taking into account individual characteristics such as stool patterns, have the potential to alleviate gastrointestinal disorders and improve gut health while avoiding the variability exhibited among individuals by conventional probiotics. This study aimed to explore the efficacy of personalized probiotic interventions in managing distinct stool patterns (constipation and diarrhea) by investigating their impact on the gut microbiome and gastrointestinal symptoms using a prospective, randomized, double-blind, placebo-controlled clinical trial design. This research leverages the multi-strain probiotic formulas, Consti-Biome and Sensi-Biome, which have previously demonstrated efficacy in alleviating constipation and diarrhea symptoms, respectively. Improvement in clinical symptoms improvement and compositional changes in the gut microbiome were analyzed in participants with predominant constipation or diarrhea symptoms. Results indicate that tailored probiotics could improve constipation and diarrhea by promoting Erysipelotrichaceae and Lactobacillaceae, producers of short-chain fatty acids, and regulating inflammation and pain-associated taxa. These findings suggest the potential of tailored probiotic prescriptions and emphasize the need for personalized therapeutic approaches for digestive disorders. Clinical trial registration: https://cris.nih.go.kr/cris/index/index.do, identifier KCT0009111.

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