[Research of Straw Biomass Based on NIR by Wavelength Selection of IPLS-SPA].

The whole spectrum usually contains a lot of redundant information in the near-infrared spectroscopy model, the presence of redundant information will increase the model resolution time and increase the difficulty of parsing model, Therefore, how to select the characteristic wavelength quickly and effectly is very crucial. In this paper, we combined the algorithm based on SPA (successive projections algorithm ) with IPLS (interval partial least squares ) to selec the characteristic wavelength in the fermentation of wheat straw microbial biomass, A total of 85 samples prepared by measuring microbial biomass using glucosamine method, 68 samples are chosen as calibration set and 17 simples are chosen as verification set. First, the whole spectral region 520 points are segmented modeling according to the interval wavelength point size 10, 20, 30, 40 and 4 450~4 925 cm-1, 9 194~9 993 cm-1 two-band range are selected as the characteristic wavelength band, then pick out the new feature wavelength points by Successive Projections Algorithm band and Genetic Algorithm (GA), comprehensive analysis and comparison the result of model. The experimental results show that the using of IPLS-SPA algorithm to select the combination band 4 450~4 925 cm-1 & 9 194~9 993 cm-1 has the best modeling effect, compared with the modeling of whole spectrum, the wavelength points decrease from 520 to 10, the correction coefficient of determination R2 rised from 0. 884 9 to 0. 945 28, root mean square error (RMSE) dropped from 11. 104 9 to 8. 203 3, although the genetic algorithm model achieved the better accuracy, but the results are instable and have a strong randomness , while IPLS combined SPA method can select characteristic wavelength information stability and accurately, which can improve the model calculation speed and reduce the fitting difficulty of the model, it can be used as a new reference method for band selection. The results show that using near infrared spectroscopy method for straw biomass rapid detection is feasible.

[Rapid discriminating hogwash oil and edible vegetable oil using near infrared optical fiber spectrometer technique].

In the present study, a new method using near infrared spectroscopy combined with optical fiber sensing technology was applied to the analysis of hogwash oil in blended oil. The 50 samples were a blend of frying oil and "nine three" soybean oil according to a certain volume ratio. The near infrared transmission spectroscopies were collected and the quantitative analysis model of frying oil was established by partial least squares (PLS) and BP artificial neural network The coefficients of determina- tion of calibration sets were 0.908 and 0.934 respectively. The coefficients of determination of validation sets were 0.961 and 0.952, the root mean square error of calibrations (RMSEC) was 0.184 and 0.136, and the root mean square error of predictions (RMSEP) was all 0.111 6. They conform to the model application requirement. At the same time, frying oil and qualified edible oil were identified with the principal component analysis (PCA), and the accurate rate was 100%. The experiment proved that near infrared spectral technology not only can quickly and accurately identify hogwash oil, but also can quantitatively detect hog- wash oil. This method has a wide application prospect in the detection of oil.

Genome-wide miRNAs expression profiles of Schistosoma japonicum schistosomula in response to artesunate.

AIM: miRNAs play a significant role in pharmacogenomics and are likely to be important in the molecular mechanism of atesunate (ART) effects on Schistosoma japonicum. METHODS: We sequenced the RNAs using an Illumina (Solexa) DNA sequencer and compared the relative expression levels of the miRNAs in 10-day-old schistosomula from ART and the parallel control group. RESULTS: We characterized 95 known miRNAs from S. japonicum schistosomula individuals, including 38 novel miRNA families. Among the detectable 134 miRNAs differentially expressed (>2.0-fold change, p < 0.01) after ART treatment in schistosomula, a total of seven known or novel 3p- or 5p- derived S. japonicum miRNAs were characterized. We propose that sja-miR-125b may regulate the expression of ART metabolizing enzymes, glutathione synthetase or heme-binding protein 2 to help S. japonicum resists or adapts to drug stress and also ART may significantly inhibit sexual maturation of female worms mediated by mir-71b/2 miRNA cluster. CONCLUSION: This was the first comprehensive miRNAs expression profile analysis of S. japonicum in response to ART, and provides an overview of the complex network of the mechanism of action of ART on S. japonicum.

Loop-mediated isothermal amplification (LAMP): early detection of Toxoplasma gondii infection in mice.

BACKGROUND: Toxoplasmosis is a widespread zoonotic parasitic disease that occurs in both animals and humans. Traditional molecular assays are often difficult to perform, especially for the early diagnosis of Toxoplasma gondii infections. Here, we established a novel loop-mediated isothermal amplification targeting the 529 bp repeat element (529 bp-LAMP) to detect T. gondii DNA in blood samples of experimental mice infected with tachyzoites of the RH strain. FINDINGS: The assay was performed with Bst DNA polymerase at 65°C for 1 h. The detection limit of the 529 bp-LAMP assay was as low as 0.6 fg of T. gondii DNA. The sensitivity of this assay was 100 and 1000 fold higher than that of the LAMP targeting B1 gene (B1-LAMP) and nested PCR targeting 529 bp repeat element (529 bp-nested PCR), respectively. The specificity of the 529 bp-LAMP assay was determined using the DNA samples of Trypanosoma evansi, Plasmodium falciparum, Paragonimus westermani, Schistosoma japonicum, Fasciola hepatica and Angiostrongylus cantonensis. No cross-reactivity with the DNA of any parasites was found. The assay was able to detect T. gondii DNA in all mouse blood samples at one day post infection (dpi). CONCLUSIONS: We report the following findings: (i) The detection limit of the 529 bp-LAMP assay is 0.6 fg of T. gondii DNA; (ii) The assay does not involve any cross-reactivity with the DNA of other parasites; (iii) This is the first report on the application of the LAMP assay for early diagnosis of toxoplasmosis in blood samples from experimentally infected mice. Due to its simplicity, sensitivity and cost-effectiveness for common use, we suggest that this assay should be used as an early diagnostic tool for health control of toxoplasmosis.