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1.
J Clin Microbiol ; 47(11): 3409-12, 2009 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19710269

RESUMEN

This study was designed to evaluate the performance of the broth microdilution (BMD) method to detect production of extended-spectrum beta-lactamases (ESBLs) and AmpC beta-lactamases in Enterobacteriaceae by using clavulanic acid (CA) and boronic acid (BA) as ESBL and AmpC beta-lactamase inhibitors, respectively. A total of 100 clinical isolates of Enterobacteriaceae were analyzed. Mueller-Hinton broth containing serial twofold dilutions of cefotaxime (CTX), ceftazidime (CAZ), aztreonam (ATM), or cefepime (FEP) with or without either or both CA and BA was prepared. An eightfold or greater decrease in the MIC of CTX, CAZ, ATM, or FEP in the presence of CA and BA was considered a positive result for ESBL and plasmid-mediated AmpC beta-lactamase (PABL), respectively. In tests with CA, expanded-spectrum beta-lactams containing BA (CTX-BA, CAZ-BA, ATM-BA, and FEP-BA) showed higher positive rates in detecting ESBL producers than those without BA. The combination of CTX- and CAZ-based BMD tests with CA and BA showed sensitivity and specificity of 100% for the detection of ESBLs and PABLs. The BMD testing could be applicable for routine use in commercially available semiautomated systems for the detection of ESBLs and PABLs in Enterobacteriaceae.


Asunto(s)
Ácidos Borónicos/farmacología , Ácido Clavulánico/farmacología , Enterobacteriaceae/efectos de los fármacos , Enterobacteriaceae/enzimología , Inhibidores Enzimáticos/farmacología , Pruebas de Sensibilidad Microbiana/métodos , beta-Lactamasas/biosíntesis , Antibacterianos/farmacología , Medios de Cultivo/química , Enterobacteriaceae/aislamiento & purificación , Infecciones por Enterobacteriaceae/microbiología , Humanos , Sensibilidad y Especificidad , Inhibidores de beta-Lactamasas
2.
Int J Antimicrob Agents ; 31(5): 467-71, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18337065

RESUMEN

A study using boronic acid (BA) was designed to detect the extended-spectrum beta-lactamases (ESBLs) in Enterobacteriaceae producing chromosomal AmpC beta-lactamases. A total of 197 clinical isolates of Enterobacter spp. (n=100), Serratia marcescens (n=62) and Citrobacter freundii (n=35) were analysed. Genes encoding ESBLs were detected by polymerase chain reaction (PCR) amplification followed by direct sequencing of PCR products. The Clinical and Laboratory Standards Institute confirmatory test detected only 72.1% of the ESBL-producing isolates. When a > or =5mm increase in the zone diameter of either the cefotaxime/clavulanic acid and/or the ceftazidime/clavulanic acid disks tested in combination with BA versus cefotaxime and/or ceftazidime containing BA was considered to be a positive for ESBL, the method detected 60 (98.4%) of the 61 isolates that harboured ESBLs and showed no false-positive results for ESBL-non-producing isolates. In conclusion, the BA disk test is a highly sensitive and specific method for the detection of ESBLs in Enterobacteriaceae producing chromosomal AmpC beta-lactamases.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ácidos Borónicos/metabolismo , Citrobacter freundii/enzimología , Enterobacter/enzimología , Pruebas de Sensibilidad Microbiana/métodos , Serratia marcescens/enzimología , beta-Lactamasas/metabolismo , Proteínas Bacterianas/genética , ADN Bacteriano/química , ADN Bacteriano/genética , Humanos , Reacción en Cadena de la Polimerasa , Sensibilidad y Especificidad , Análisis de Secuencia de ADN , beta-Lactamasas/genética
3.
Diagn Microbiol Infect Dis ; 57(3): 315-8, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17174510

RESUMEN

A study using boronic acid (BA), an AmpC enzyme inhibitor, was designed to detect the combined expression of plasmid-mediated AmpC beta-lactamases (pAmpCs) and extended-spectrum beta-lactamases (ESBLs) in bacterial isolates naturally lacking chromosomal ampC genes. A total of 122 Klebsiella spp., Salmonella spp., and Proteus mirabilis isolates producing or nonproducing pAmpCs and/or ESBLs were analyzed. Detection of genes encoding ESBLs and AmpCs was confirmed by polymerase chain reaction (PCR) followed by sequencing of PCR products. A > or = 5-mm increase in zone diameter for i) cefoxitin (FOX) and/or cefotetan (CTT) containing BA versus FOX and/or CTT alone was considered positive for AmpC; ii) ceftazidime (CAZ)-clavulanate (CA) and/or cefotaxime (CTX)-CA tested in combination with BA versus CAZ and/or CTX containing BA was considered positive for ESBL. The disk tests of FOX and/or CTT alone and with BA detected 98.4% of organisms producing pAmpCs. All of the 21 pAmpC and ESBL coproducers were accurately detected ESBL by the disk tests of CTX-CA and/or CAZ-CA containing BA and CTX and/or CAZ containing BA. In conclusion, The BA disk test using Clinical and Laboratory Standards Institute methodology is simple and very efficient method to detect pAmpC and ESBL in organisms naturally lacking chromosomal AmpC enzymes. In particular, the method accurately detects the isolates that harbor both AmpCs and ESBLs.


Asunto(s)
Proteínas Bacterianas/análisis , Pruebas Antimicrobianas de Difusión por Disco/métodos , Klebsiella/efectos de los fármacos , Proteus mirabilis/efectos de los fármacos , Salmonella/efectos de los fármacos , beta-Lactamasas/análisis , Proteínas Bacterianas/química , Ácidos Borónicos/farmacología , Humanos , Klebsiella/enzimología , Klebsiella/genética , Plásmidos , Proteus mirabilis/enzimología , Proteus mirabilis/genética , Salmonella/enzimología , Salmonella/genética , beta-Lactamasas/química , beta-Lactamasas/genética
4.
Am J Infect Control ; 34(7): 443-6, 2006 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16945691

RESUMEN

A total of 22 isolates of Pantoea strains, unusual causative agents of clinical infection, was isolated from blood cultures from 9 patients and 1 ear swab from 1 of the patients within a period of 1 month in a tertiary-care hospital. Pseudooutbreak was suspected because specimens were collected from a limited number of places and the patients did not show consistent signs or symptoms of bacterial sepsis. Enterobacterial repetitive intergenic consensus (ERIC) polymerase chain reaction (PCR) and partial 16S ribosomal DNA sequencing were performed to determine the clonal relationship among the isolates. Screening environmental cultures revealed that cotton pledgets were contaminated with Pantoea species. Molecular typing suggested that 2 different clones of Pantoea strains were responsible for the pseudooutbreak. Cotton materials may be a possible source of Pantoea pseudooutbreak. Molecular typing is useful for investigating epidemics and identifying unusual clinical isolates.


Asunto(s)
Bacteriemia/epidemiología , Brotes de Enfermedades , Infecciones por Bacterias Gramnegativas/epidemiología , Pantoea/aislamiento & purificación , Adulto , Anciano , Bacteriemia/microbiología , Fibra de Algodón , Femenino , Infecciones por Bacterias Gramnegativas/microbiología , Humanos , Lactante , Corea (Geográfico)/epidemiología , Masculino , Persona de Mediana Edad , Datos de Secuencia Molecular , Pantoea/genética , ARN Ribosómico 16S/genética
5.
Diagn Microbiol Infect Dis ; 56(3): 289-95, 2006 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16854552

RESUMEN

Virulence and antimicrobial resistance are important determinators of the clinical manifestations and of the treatments of bacterial infections. Here, we studied the associations between the methicillin resistance of clinical Staphylococcus aureus isolates, their classifications as particular staphylococcal cassette chromosome mec (SCCmec) subtypes, and their toxin gene profiles. In total, 252 S. aureus isolates were collected from 13 healthcare facilities in 6 Korean provinces. The overall prevalence of methicillin-resistant S. aureus (MRSA) was 63%. SCCmec typing and toxin gene analysis were performed by multiplex polymerase chain reaction. One or more staphylococcal toxin genes were found in 190 (75.4%) strains. Methicillin-resistant S. aureus strains carried toxin genes more frequently than methicillin-susceptible S. aureus strains (85.5% versus 53.8%). SCCmec subtypes differed in terms of their frequencies of toxin gene carriage (95.9% in SCCmec II, 74.4% in SCCmec III, and 68.8% in SCCmec IV). Specific SCCmec subtypes frequently harbored particular toxin gene combinations: 77.3% of SCCmec II strains carried sec and tst genes, 48.8% of SCCmec III strains carried sea and see genes, and 46.9% of SCCmec IV carried sea and seb genes. Indeed, the most prevalent combination in MRSA strains, that of sec and tst, was only observed in SCCmec II strains, and these strains failed to show the coexistence of sea and see or sea and seb genes. Thus, the SCCmec subtypes of S. aureus revealed specific staphylococcal toxin profiles. We revealed that certain staphylococcal toxin gene profiles are associated not only with the methicillin resistance of S. aureus but also with their SCCmec subtypes.


Asunto(s)
Toxinas Bacterianas/genética , Cromosomas Bacterianos , Resistencia a la Meticilina/genética , Infecciones Estafilocócicas/epidemiología , Staphylococcus aureus/efectos de los fármacos , Toxinas Bacterianas/metabolismo , Humanos , Pruebas de Sensibilidad Microbiana , Familia de Multigenes , Prevalencia , Infecciones Estafilocócicas/microbiología , Staphylococcus aureus/clasificación , Staphylococcus aureus/genética , Staphylococcus aureus/aislamiento & purificación
6.
Diagn Microbiol Infect Dis ; 55(3): 219-24, 2006 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-16545935

RESUMEN

The aim of the study is to investigate the prevalence of plasmid-mediated AmpC beta-lactamases in Enterobacteriaceae naturally lacking chromosomal AmpC beta-lactamases. A total of 1860 clinical isolates of Klebsiella spp., Salmonella spp., and Proteus mirabilis were collected from a Korean hospital between January 2002 and December 2004. For the isolates that are nonsusceptible to cefoxitin, polymerase chain reaction amplification of the bla(SHV), bla(TEM), and bla(AmpC) genes and sequencing were performed. Plasmid-mediated AmpC beta-lactamases were found in 2.9% (37 isolates of DHA-1, 1 isolate of CMY-1, 1 isolate of CMY-2, and 1 isolate of ACT-1) of Klebsiella pneumoniae, 2.5% (5 isolates of DHA-1) of Klebsiella oxytoca, 0.8% (1 isolate of DHA-1) of Salmonella spp., and none of P. mirabilis isolates. The DHA-1-producing K. pneumoniae was only 2 isolates (0.6%) in 2002, but the rate and the number significantly increased to 2.4% (13 of 538 isolates) in 2003 and to 4.3% (22 of 512) in 2004. In conclusion, DHA-1 is the most prevalent plasmid-mediated AmpC beta-lactamase in Enterobacteriaceae lacking chromosomal ampC gene, and the DHA-1-producing K. pneumoniae isolates have rapidly increased since 2003 in a Korean hospital. In addition, this is the first report of the appearance of a K. pneumoniae isolate producing ACT-1 beta-lactamase in Korea.


Asunto(s)
Proteínas Bacterianas/genética , Enterobacteriaceae/enzimología , Plásmidos/genética , beta-Lactamasas/genética , Distribución de Chi-Cuadrado , Enterobacteriaceae/efectos de los fármacos , Enterobacteriaceae/genética , Humanos , Corea (Geográfico) , Pruebas de Sensibilidad Microbiana/métodos , Plásmidos/efectos de los fármacos
7.
Int J Antimicrob Agents ; 28(6): 520-4, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17095195

RESUMEN

Over a 1-month period, a total of 16 ceftriaxone- and cefoxitin-resistant Klebsiella pneumoniae isolates were isolated from 15 patients hospitalised at a burns intensive care unit (ICU). These isolates showed negative results for extended-spectrum beta-lactamase (ESBL) by the Vitek system and were highly resistant to ceftazidime, aztreonam and cefoxitin (minimum inhibitory concentrations > or =128 microg/mL). The bla(SHV-2a) and bla(DHA-1) genes were detected by polymerase chain reaction and sequence analysis. Pulsed-field gel electrophoresis profiles of the isolates were identical. AmpC disk tests for AmpC enzymes as well as double-disk tests and Clinical and Laboratory Standards Institute (CLSI) confirmatory disk tests for ESBLs yielded positive results for all the isolates. However, only three isolates (18.8%) were shown to produce ESBL by CLSI confirmatory tests using broth microdilution. We report the first outbreak of colonisations and infections due to K. pneumoniae isolates co-producing an SHV-2a ESBL and a DHA-1 AmpC beta-lactamase in a Korean hospital, which were suggested to represent a single clonal spread at a burns ICU. In addition, this report presents problems associated with ESBL detection using broth microdilution in isolates that co-produce an ESBL and an AmpC beta-lactamase.


Asunto(s)
Unidades de Quemados , Resistencia a las Cefalosporinas , Brotes de Enfermedades , Infecciones por Klebsiella/epidemiología , Klebsiella pneumoniae/genética , beta-Lactamasas/biosíntesis , Antibacterianos/farmacología , Cefoxitina/farmacología , Cefalosporinas/farmacología , Humanos , Infecciones por Klebsiella/microbiología , Klebsiella pneumoniae/efectos de los fármacos , Klebsiella pneumoniae/enzimología , Corea (Geográfico)/epidemiología , Pruebas de Sensibilidad Microbiana , Reacción en Cadena de la Polimerasa , beta-Lactamasas/genética
8.
Biomed Res Int ; 2016: 1081536, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26904669

RESUMEN

The performance of molecular tests using the Verigene Gram-Positive and Gram-Negative Blood Culture nucleic acid tests (BC-GP and BC-GN, resp.; Naosphere, Northbrook, IL, USA) was evaluated for the identification of microorganisms detected from blood cultures. Ninety-nine blood cultures containing Gram-positive bacteria and 150 containing Gram-negative bacteria were analyzed using the BC-GP and BC-GN assays, respectively. Blood cultures were performed using the Bactec blood culture system (BD Diagnostic Systems, Franklin Lakes, NJ, USA) and conventional identification and antibiotic-susceptibility tests were performed using a MicroScan system (Siemens, West Sacramento, CA, USA). When a single strain of bacteria was isolated from the blood culture, Verigene assays correctly identified 97.9% (94/96) of Gram-positive bacteria and 93.8% (137/146) of Gram-negative bacteria. Resistance genes mecA and vanA were correctly detected by the BC-GP assay, while the extended-spectrum ß-lactamase CTX-M and the carbapenemase OXA resistance gene were detected from 30 cases cultures by the BC-GN assay. The BC-GP and BC-GN assays showed high agreement with conventional identification and susceptibility tests. These tests are useful for rapid identification of microorganisms and the detection of clinically important resistance genes from positive Bactec blood cultures.


Asunto(s)
Bacteriemia/sangre , Sangre/microbiología , Bacterias Gramnegativas/genética , Bacterias Grampositivas/genética , Bacteriemia/microbiología , Proteínas Bacterianas/genética , Ligasas de Carbono-Oxígeno/genética , Farmacorresistencia Bacteriana/genética , Bacterias Gramnegativas/aislamiento & purificación , Bacterias Grampositivas/aislamiento & purificación , Humanos , beta-Lactamasas/genética
9.
Diagn Microbiol Infect Dis ; 52(4): 281-4, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16165000

RESUMEN

Of 176 Salmonella isolates isolated from 2000 to 2003 in a Korean university hospital, 2 cefoxitin-resistant isolates of Salmonella enterica serovar Rissen were found in 2002. Both isolates were resistant to multiple beta-lactam antibiotics, including ampicillin, amoxicillin-clavulanate, cefoxitin, cefotaxime, and ceftazidime. Cell sonicates of the both clinical isolates and their transconjugants had beta-lactamase band of approximate isoelectric point of >8.6. The resistance to cefoxitin was transferred by conjugation to the recipient Escherichia coli J53. The resistance determinant was on conjugative plasmids that encoded a CMY-2, a plasmid-mediated AmpC beta-lactamase. To our knowledge, these are the first description of S. enterica serovar Rissen harboring CMY-2 in South Korea.


Asunto(s)
Proteínas Bacterianas/metabolismo , Plásmidos/genética , Salmonella enterica/efectos de los fármacos , Salmonella enterica/enzimología , beta-Lactamasas/metabolismo , Anciano , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Cefoxitina/farmacología , Resistencia a las Cefalosporinas/genética , Conjugación Genética , Diarrea/microbiología , Femenino , Hospitales Universitarios , Humanos , Lactante , Corea (Geográfico) , Masculino , Pruebas de Sensibilidad Microbiana , Estudios Retrospectivos , Infecciones por Salmonella/microbiología , Salmonella enterica/clasificación , Salmonella enterica/genética , Análisis de Secuencia de ADN , beta-Lactamasas/genética
10.
Diagn Microbiol Infect Dis ; 82(1): 70-2, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25702524

RESUMEN

All 16 Klebsiella pneumoniae isolates and both Escherichia coli isolates harbored the bla(OXA-232) and bla(CTX-M-15) genes. Furthermore, all 16 K. pneumoniae isolates belonged to a unique pulsed-field gel electrophoresis clone and were assigned to an identical sequence type (ST14). The 2 E. coli isolates were identified as ST131 and ST457. The bla(OXA-232) gene underwent horizontal transfer to E. coli isolates via a conjugative ColE-type plasmid. The introduction of this K. pneumoniae ST14 strain to the Korean hospital was attributed to an index patient who was likely colonized during a prior hospitalization in India.


Asunto(s)
Infección Hospitalaria/microbiología , Infecciones por Enterobacteriaceae/microbiología , Escherichia coli/enzimología , Klebsiella pneumoniae/enzimología , Plásmidos/análisis , beta-Lactamasas/genética , Adulto , Anciano , Anciano de 80 o más Años , Conjugación Genética , Electroforesis en Gel de Campo Pulsado , Infecciones por Enterobacteriaceae/epidemiología , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Femenino , Transferencia de Gen Horizontal , Genotipo , Hospitales , Humanos , Klebsiella pneumoniae/clasificación , Klebsiella pneumoniae/genética , Klebsiella pneumoniae/aislamiento & purificación , Corea (Geográfico)/epidemiología , Masculino , Persona de Mediana Edad , Epidemiología Molecular , Tipificación Molecular , beta-Lactamasas/metabolismo
11.
Diagn Microbiol Infect Dis ; 78(1): 40-4, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24157060

RESUMEN

A new real-time reverse transcription polymerase chain reaction (RT-PCR) assay, the AccuPower Norovirus Real-time RT-PCR Kit, was evaluated in detection of human norovirus in stool specimens. Studies for detection limit, dynamic range, reproducibility, and cross-reactivity were performed. A total of 281 fecal specimens were tested using the AccuPower Norovirus Real-time RT-PCR Kit, and the results were compared with those obtained using another real-time RT-PCR system. Norovirus positivity and genotype were confirmed by direct sequencing. The lowest mean numbers of genome copies of GI and GII that could be detected by the assay were 12.3 and 5.6 RNA copies/reaction, respectively. The positive, negative, and overall percent agreements between the 2 real-time PCR assays were 99.0% (96/97), 95.1% (175/184), and 96.4% (271/281), respectively. The AccuPower Norovirus Real-time RT-PCR system showed good analytical and clinical performance and may be a useful diagnostic tool for norovirus infection.


Asunto(s)
Infecciones por Caliciviridae/diagnóstico , Diarrea/diagnóstico , Heces/virología , Técnicas de Diagnóstico Molecular/métodos , Norovirus/aislamiento & purificación , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Niño , Preescolar , Diarrea/virología , Femenino , Humanos , Lactante , Recién Nacido , Masculino , Persona de Mediana Edad , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Adulto Joven
12.
Ann Lab Med ; 34(3): 240-2, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24790913

RESUMEN

We assessed the reporting times for identification of nasal methicillin-resistant Staphylococcus aureus (MRSA) carriers in 2011 in a university-affiliated hospital using surveillance cultures incubated for 1 and 2 days with ChromID MRSA (bioMérieux, France). Of 2,732 nasal swabs tested, MRSA was detected in 829 (85.6%) and 140 (14.4%) swabs after 1 and 2 days of incubation, respectively, and the median reporting times for positive specimens were 33.7 hr (range, 18.2-156.9 hr) and 108.1 hr (range, 69.8-181.0 hr), respectively. Detection rate after 1-day incubation was 85%. Additional 1-day incubation improved detection rate; however, it prolonged the reporting times of positive specimens approximately up to 4 days because of the need for confirmatory tests such as species identification and susceptibility tests. Following a 2-day culture with ChromID MRSA, rapid confirmatory tests are warranted to reduce delay in identifying MRSA carriers.


Asunto(s)
Staphylococcus aureus Resistente a Meticilina/aislamiento & purificación , Infecciones Estafilocócicas/diagnóstico , Humanos , Cavidad Nasal/microbiología , Juego de Reactivos para Diagnóstico , Sensibilidad y Especificidad , Infecciones Estafilocócicas/microbiología , Factores de Tiempo
13.
Vaccine ; 32(48): 6396-402, 2014 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-25312273

RESUMEN

BACKGROUND: Group A rotavirus is the leading cause of acute gastroenteritis in children worldwide. We investigated G and P genotypes of group A rotavirus strains isolated from patients during 2013 and investigated which genotypes were identified from vaccinated patients. METHODS: From January to December 2013, 2235 fecal specimens were tested for rotavirus antigen, of which 374 specimens (16.7%) showed positive results. Strains from 288 rotavirus-positive specimens were genotyped using PCR and sequencing, and individual patients' corresponding vaccine histories were investigated through the Korean Center for Disease Control website. RESULTS: G2 (22.6%) and P[4] (24.0%) were the most frequently identified G and P genotypes, respectively; accordingly, G2P[4] (19.8%) was the most prevalent G/P genotype observed in this period. G4P[6] (10.1%) was the second most prevalent G/P genotype and was mostly detected in neonates. Other genotypes, G1P[8], G9P[8], G1P[6], and G3P[6], were also detected. Of 288 rotavirus-positive specimens, 48 specimens were obtained from previously vaccinated patients. G2P[4] was also the genotype most frequently isolated from vaccinated patients. VP7 epitope analysis of G1P[8] and G2P[4] strains showed at least one amino acid differences in comparison with Rotarix and RotaTeq vaccine strains. The genotypic distribution of rotavirus strains in Korea has been shown temporal and geographical differences. CONCLUSION: This study showed that G2P[4] was the genotype most frequently isolated from both vaccinated and unvaccinated patients in Korea during 2013. However, it is unclear whether the change of predominant genotype is due to the effect of vaccination or due to natural variation.


Asunto(s)
Genotipo , Infecciones por Rotavirus/epidemiología , Vacunas contra Rotavirus/uso terapéutico , Rotavirus/clasificación , Antígenos Virales/aislamiento & purificación , Niño , Preescolar , Epítopos/análisis , Gastroenteritis/epidemiología , Gastroenteritis/prevención & control , Gastroenteritis/virología , Humanos , Lactante , Recién Nacido , Epidemiología Molecular , ARN Viral/genética , República de Corea/epidemiología , Infecciones por Rotavirus/prevención & control , Infecciones por Rotavirus/virología , Vacunas contra Rotavirus/administración & dosificación , Vacunas Atenuadas/administración & dosificación , Vacunas Atenuadas/uso terapéutico
14.
Vaccine ; 32(48): 6403-7, 2014 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-25305566

RESUMEN

Here, we examined the distribution of pneumococcal serotypes and the antibiotic susceptibility of Streptococcus pneumoniae in clinical blood isolates. The serotypes of 91 S. pneumoniae blood isolates, collected from January 2003 to March 2014, were identified by multiplex PCR and sequencing. The most common serotypes were 19F, 19A, 3, 4, and 14, accounting for 53.8% of the total. The serotype coverage rates of pneumococcal conjugated vaccine (PCV) 7, PCV10, and PCV13 were different during three test periods: 38.7%, 70.9%, and 93.5% in period I (2003-2005), 46.8%, 50.0%, and 75.0% in period II (2006-2008), and 28.5%, 32.1%, and 64.2% in period III (2009-2014), respectively. By contrast, the number of non-PCV13 serotypes increased from 6.4% in period I to 25% and 35.7% in periods II and III, respectively. The susceptibility of non-PCV13 serotypes to antimicrobial agents (penicillin, erythromycin, cefotaxime, and meropenem) was higher than that of PCV serotypes. In particular, non-PCV13 serotypes showed 100% and 95% susceptibility to penicillin and cefotaxime, respectively. Serotypes 19A and 19F showed high prevalence (79.1%) among 24 multi-drug resistant (MDR) isolates. Notably, all serotype 19A isolates were MDR. From January 2003 to March 2014, the proportion of non-PCV13 serotype pneumococci in blood isolates increased whereas the coverage rate of PCV13 decreased. Effective pneumococcal vaccines are required to protect against MDR serotype 19A isolates and the increasing number of non-PCV13 serotypes.


Asunto(s)
Infecciones Neumocócicas/epidemiología , Serogrupo , Streptococcus pneumoniae/clasificación , Adulto , Anciano , Bacteriemia/epidemiología , Bacteriemia/microbiología , Niño , Preescolar , Farmacorresistencia Bacteriana Múltiple , Femenino , Humanos , Incidencia , Masculino , Persona de Mediana Edad , Infecciones Neumocócicas/microbiología , Reacción en Cadena de la Polimerasa , República de Corea/epidemiología
15.
Ann Lab Med ; 34(3): 216-22, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24790909

RESUMEN

BACKGROUND: We evaluated the analytical and clinical performances of the SD BIOLINE Rota/Adeno Rapid kit (SD Rota/Adeno Rapid; Standard Diagnostics, Inc., Korea), an immunochromatographic assay (ICA), for the simultaneous detection of rotaviruses and adenoviruses in human stool samples. METHODS: We tested 400 clinical stool samples from patients with acute gastroenteritis and compared the ICA results with the results obtained by using ELISA, enzyme-linked fluorescent assays (ELFA), PCR, and multiplex reverse transcription-PCR (mRT-PCR). To assess the analytical performance of the SD BIOLINE Rota/Adeno Rapid kit, we determined its detection limit, reproducibility, cross-reactivity, and analytical reactivity for adenovirus subtypes, and performed interference studies. RESULTS: The overall agreement rates among the tested methods were 91.5% for rotavirus and 85.5% for adenovirus. On the basis of mRT-PCR, the overall agreement, positive agreement, and negative agreement rates of the ICA were 95.6%, 100%, and 94.9% for rotavirus, and 94.0%, 71.4%, and 94.8% for adenovirus, respectively. Using the ICA, we detected all the subtypes of adenovirus tested, but the analytical reactivities for adenovirus subtypes were different between the 4 adenovirus detection methods. The high reproducibility was confirmed, and no cross-reactivity or interference was detected. CONCLUSIONS: The SD BIOLINE Rota/Adeno Rapid kit showed acceptable analytical and clinical performances. However, interpretation of adenovirus positive/negative result should be cautious because of different detectability for adenovirus subtypes among adenovirus detection methods.


Asunto(s)
Adenoviridae/inmunología , Cromatografía de Afinidad , Heces/virología , Rotavirus/inmunología , Enfermedad Aguda , Adenoviridae/genética , Adenoviridae/aislamiento & purificación , Reacciones Cruzadas , ADN Viral/análisis , Ensayo de Inmunoadsorción Enzimática , Gastroenteritis/diagnóstico , Gastroenteritis/virología , Humanos , Reacción en Cadena de la Polimerasa Multiplex , ARN Viral/análisis , Juego de Reactivos para Diagnóstico , Reproducibilidad de los Resultados , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Rotavirus/genética , Rotavirus/aislamiento & purificación
16.
J Microbiol Biotechnol ; 23(11): 1641-3, 2013 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-24043126

RESUMEN

Norovirus is the major cause of acute gastroenteritis worldwide. Between November 2012 and June 2013, 1718 stool samples were requested for norovirus antigen testing in the metropolitan areas of South Korea, and 91 samples were genotyped. The norovirus antigen-positive rate peaked at 52.8% in December 2012. [corrected]. A novel norovirus GII.4 variant, GII.4 Sydney 2012, was the most frequently found genotype (60.4%) during this period. This study demonstrates that norovirus activity increased during the winter of 2012-2013 in South Korea and that norovirus GII.4 Sydney 2012 was the cause of the norovirus epidemic during this period.


Asunto(s)
Infecciones por Caliciviridae/epidemiología , Gastroenteritis/clasificación , Gastroenteritis/epidemiología , Norovirus/clasificación , Norovirus/aislamiento & purificación , Infecciones por Caliciviridae/virología , Heces/virología , Gastroenteritis/genética , Genotipo , Corea (Geográfico) , Epidemiología Molecular , Norovirus/genética , República de Corea/epidemiología , Estaciones del Año
17.
Ann Clin Lab Sci ; 42(1): 57-64, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22371911

RESUMEN

PURPOSE: This study was performed to evaluate the clinical significance of procalcitonin in burn patients and to investigate whether procalcitonin levels at admission can be a prognostic indicator for sepsis and mortality. MATERIALS AND METHODS: Between January 2009 and December 2010, procalcitonin levels in 175 patients were tested within the first 48 hours after burn injury. Serum procalcitonin was measured using an enzyme-linked fluorescence assay. Mortality rates and positive culture rates of blood, wound, and sputum were evaluated among the subgroups divided by burn size, procalcitonin levels, and clinical prognosis. RESULTS: Positive blood culture and mortality rates correlated significantly with procalcitonin concentrations within the first 48 hours after burn injury. The area under the ROC curve for procalcitonin related to mortality was 0.844. Survival analysis revealed that the mortality rate was significantly higher in patients with procalcitonin concentrations ≥ 2 ng/mL than in patients with procalcitonin concentrations < 2 ng/mL (P < 0.001). Multivariate analysis demonstrated that procalcitonin was an independent prognostic factor for burn patients (Hazard ratio = 3.16, P = 0.001). CONCLUSIONS: Procalcitonin concentrations determined within the first 48 hours after burn injury can be a useful prognostic indicator for sepsis and mortality in burn patients.


Asunto(s)
Quemaduras/sangre , Calcitonina/sangre , Precursores de Proteínas/sangre , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Quemaduras/mortalidad , Quemaduras/patología , Péptido Relacionado con Gen de Calcitonina , Niño , Preescolar , Demografía , Progresión de la Enfermedad , Femenino , Humanos , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Pronóstico , Curva ROC , República de Corea/epidemiología , Factores de Tiempo , Adulto Joven
18.
Ann Clin Lab Sci ; 42(2): 165-73, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22585613

RESUMEN

We investigated the degree of lot-to-lot reagent variation for 5 common immunoassay items. We measured the commercial as well as in-house controls for α-fetoprotein (AFP), ferritin, CA19-9, quantitative hepatitis B surface antigen (HBsAg), and hepatitis B surface antibody (anti-HBs) 10 times each by using both the old and the new lot of reagents whenever a reagent lot was changed, over a period of 10 months. The differences in the mean control values, the percent difference (% difference), and the difference to between-run standard deviation ratio (D:SD ratio) between successive lots were calculated. The % difference in mean control values between 2 reagent lots ranged from 0.1 to 17.5% for AFP, 1.0 to 18.6% for ferritin, 0.6 to 14.3% for CA19-9, 0.6 to 16.2% for HBsAg, and 0.1 to 17.7% for anti-HBs except negative controls of HBsAg and anti-HBs. The maximum D:SD ratios between 2 lots were 4.37 for AFP, 4.39 for ferritin, 2.43 for CA19-9, 1.64 for HBsAg, and 4.16 for anti-HBs. Thus, we have experienced extensive variability in lot-to-lot reagent variation for 5 immunoassay items, indicating that reagent lot-to-lot comparability tests should be continuously performed and that laboratories should determine their own acceptance criteria for each item.


Asunto(s)
Inmunoensayo/métodos , Inmunoensayo/normas , Indicadores y Reactivos/análisis , Juego de Reactivos para Diagnóstico/normas , Antígeno CA-19-9/análisis , Calibración , Ferritinas/análisis , Anticuerpos contra la Hepatitis B/análisis , Antígenos de Superficie de la Hepatitis B/análisis , Humanos , Control de Calidad , alfa-Fetoproteínas/análisis
19.
J Virol Methods ; 186(1-2): 94-8, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22960089

RESUMEN

The analytical and clinical performance of a new rapid immunochromatography test, the SD Bioline Norovirus test, was evaluated for the detection of human norovirus in fecal specimens. The analytical performance studies were performed for detection limit, reproducibility, cross-reactivity, and interference. For comparison, 92 norovirus-positive stool samples and 126 norovirus-negative samples for which the results were confirmed by 2 different real-time PCR kits were used. The rapid immunochromatography test detected the equivalent of 4.48×10(6) copies/mL of the norovirus genome in stool samples. On performing the repeatability/reproducibility test, samples above this concentration all provided positive results (100%) and 97.8% of the samples slightly below this concentration (2.45×10(6) copies/mL) provided negative results. No cross-reactivity or interference was detected. Positive percent agreement (sensitivity), negative percent agreement (specificity), and overall percent agreement of the rapid immunochromatography test compared with testing by real-time PCR were 90.2%, 100%, and 95.9%, respectively. In addition, the rapid immunochromatography test was completed within 20 min. The SD Bioline Norovirus test was, therefore, easier and more rapid to perform and showed excellent reproducibility, no cross-reactivity, no interference, and high agreement compared with real-time PCR. Thus, this test is useful for rapid screening to identity norovirus infection.


Asunto(s)
Infecciones por Caliciviridae/diagnóstico , Cromatografía de Afinidad/métodos , Heces/virología , Gastroenteritis/virología , Norovirus/aislamiento & purificación , Preescolar , Reacciones Cruzadas , Femenino , Humanos , Lactante , Recién Nacido , Masculino , Reproducibilidad de los Resultados , República de Corea , Sensibilidad y Especificidad , Factores de Tiempo
20.
Ann Lab Med ; 32(3): 206-9, 2012 May.
Artículo en Inglés | MEDLINE | ID: mdl-22563556

RESUMEN

BACKGROUND: We performed surveillance cultures of the surfaces of X-ray cassettes to assess contamination with methicillin-resistant Staphylococcus aureus (MRSA). METHODS: The surfaces of 37 X-ray cassettes stored in a radiology department were cultured using mannitol salt agar containing 6 µg/mL oxacillin. Suspected methicillin-resistant staphylococcal colonies were isolated and identified by biochemical testing. Pulsed-field gel electrophoresis (PFGE) analysis was performed to determine the clonal relationships of the contaminants. RESULTS: Six X-ray cassettes (16.2%) were contaminated with MRSA. During the isolation procedure, we also detected 19 X-ray cassettes (51.4%) contaminated with methicillin-resistant Staphylococcus haemolyticus (MRSH), identified as yellow colonies resembling MRSA on mannitol salt agar. PFGE analysis of the MRSA and MRSH isolates revealed that most isolates of each organism were identical or closely related to each other, suggesting a common source of contamination. CONCLUSIONS: X-ray cassettes, which are commonly in direct contact with patients, were contaminated with MRSA and MRSH. In hospital environments, contaminated X-ray cassettes may serve as fomites for methicillin-resistant staphylococci.


Asunto(s)
Equipo para Diagnóstico/microbiología , Staphylococcus aureus Resistente a Meticilina/aislamiento & purificación , Staphylococcus haemolyticus/aislamiento & purificación , Antibacterianos/farmacología , Electroforesis en Gel de Campo Pulsado , Humanos , Resistencia a la Meticilina , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Oxacilina/farmacología , Staphylococcus haemolyticus/efectos de los fármacos
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