Multiplex digital PCR: a superior technique to qPCR for the simultaneous detection of duck Tembusu virus, duck circovirus, and new duck reovirus.

Duck Tembusu virus (DTMUV), duck circovirus (DuCV), and new duck reovirus (NDRV) have seriously hindered the development of the poultry industry in China. To detect the three pathogens simultaneously, a multiplex digital PCR (dPCR) was developed and compared with multiplex qPCR in this study. The multiplex dPCR was able to specifically detect DTMUV, DuCV, and NDRV but not amplify Muscovy duck reovirus (MDRV), Muscovy duck parvovirus (MDPV), goose parvovirus (GPV), H4 avian influenza virus (H4 AIV), H6 avian influenza virus (H6 AIV), and Newcastle disease virus (NDV). The standard curves showed excellent linearity in multiplex dPCR and qPCR and were positively correlated. The sensitivity results showed that the lowest detection limit of multiplex dPCR was 1.3 copies/µL, which was 10 times higher than that of multiplex qPCR. The reproducibility results showed that the intra- and interassay coefficients of variation were 0.06-1.94%. A total of 173 clinical samples were tested to assess the usefulness of the method; the positive detection rates for DTMUV, DuCV, and NDRV were 18.5, 29.5, and 14.5%, respectively, which were approximately 4% higher than those of multiplex qPCR, and the kappa values for the clinical detection results of multiplex dPCR and qPCR were 0.85, 0.89, and 0.86, indicating that the two methods were in excellent agreement.

Influence of hybrid giant Napier grass on salt and nutrient distributions with depth in a saline soil.

Cultivation of the biofuel plant, hybrid giant Napier grass (HGN), in saline soil was investigated in a greenhouse study. The results show that HGN is a salt tolerant plant which can flourish in saline soil and product a large amount of biomass. The extensively developed fibrous root system of HGN plays a significant role in the uptake of sodium from saline soil so that both soil salinity and pH are reduced. Fibrous roots of HGN are well distributed in the soil below the surface, where the metabolism of the root system produces a gradient at the depth between 10 and 20 cm in soil salinity, pH and organic content. The degradation of the HGN by the biota within the soil results in an increase in nutrients and improved soil quality. The experimental results suggest that HGN adapts to saline soil, which is promising for phytoremediation of such soils. Additional advantages of HGN include the large biomass produced which can be used for renewable energy generation.

Complete genome sequence of a highly pathogenic porcine reproductive and respiratory syndrome virus variant isolated from a backyard piglet.

The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) isolates have showed accelerating evolution under the great immune pressure in China in recent years. Here, we report the complete genome sequence of the HP-PRRSV variant GX1001 isolated from a vaccinated backyard piglet.

Complete genome sequence of a porcine reproductive and respiratory syndrome virus variant with a new deletion in the 5' untranslated region.

The GX1002 strain is a highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) characterized by a continuous 2-nucleotide deletion at positions 119 and 120 in the 5' untranslated region. This differs from prevalent HP-PRRSVs in China, which have a deletion of only 1 nucleotide at position 119. Here we report the complete genome sequence of the GX1002 strain.

Concentrations of calcium, copper, iron, magnesium, potassium, sodium and zinc in adult female hair with different body mass indexes in Taiwan.

We investigated concentrations of calcium, copper, iron, magnesium, potassium, sodium and zinc using atomic absorption spectroscopy in the hair of four groups of adult females (n = 392), ranging in age from 20 to 50 years, with different body mass index (BMI): BMI < 18, slim group; BMI 18-25, normal group; BMI 26-35, overweight or obese group; and BMI>35, morbidly obese group. We found that the group with BMI < 18 had the highest ratios for [Ca]/[Mg], [Fe]/[Cu] and [Zn]/[Cu], but the lowest ratio for [K]/[Na] in hair. On the contrary, the group with BMI > 35 had the highest ratio for [K]/[Na], but the lowest for [Fe]/[Cu] and [Zn]/[Cu] in hair. Furthermore, when we compared concentrations of Ca, Cu, Fe, Mg, K, Na and Zn between the groups with BMI < 18 and BMI > 35, we found that there were significant differences (p < 0.05) in zinc concentrations between these two groups. In addition, there were significant differences in Ca, Cu, Mg, K and Na concentrations, with p < 0.01 at least. From this point of view, we suggest that hair concentrations of Ca, Cu, Fe, Mg, K, Na and Zn may be correlated with adult female BMI, but further studies are needed.