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1.
Proc Natl Acad Sci U S A ; 121(17): e2312330121, 2024 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-38625936

RESUMEN

The apolipoprotein B messenger RNA editing enzyme, catalytic polypeptide (APOBEC) family is composed of nucleic acid editors with roles ranging from antibody diversification to RNA editing. APOBEC2, a member of this family with an evolutionarily conserved nucleic acid-binding cytidine deaminase domain, has neither an established substrate nor function. Using a cellular model of muscle differentiation where APOBEC2 is inducibly expressed, we confirmed that APOBEC2 does not have the attributed molecular functions of the APOBEC family, such as RNA editing, DNA demethylation, and DNA mutation. Instead, we found that during muscle differentiation APOBEC2 occupied a specific motif within promoter regions; its removal from those regions resulted in transcriptional changes. Mechanistically, these changes reflect the direct interaction of APOBEC2 with histone deacetylase (HDAC) transcriptional corepressor complexes. We also found that APOBEC2 could bind DNA directly, in a sequence-specific fashion, suggesting that it functions as a recruiter of HDAC to specific genes whose promoters it occupies. These genes are normally suppressed during muscle cell differentiation, and their suppression may contribute to the safeguarding of muscle cell fate. Altogether, our results reveal a unique role for APOBEC2 within the APOBEC family.


Asunto(s)
Cromatina , Proteínas Musculares , Desaminasas APOBEC/genética , Desaminasas APOBEC-1/genética , Diferenciación Celular/genética , Cromatina/genética , Citidina Desaminasa/metabolismo , ADN , Fibras Musculares Esqueléticas/metabolismo , Proteínas Musculares/metabolismo , Mioblastos/metabolismo , ARN Mensajero/genética , Animales , Ratones
2.
Hum Mol Genet ; 24(16): 4559-72, 2015 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-26002101

RESUMEN

Copy number variations on human chromosome 15q11-q13 have been implicated in several neurodevelopmental disorders. A paternal loss or duplication of the Prader-Willi syndrome/Angelman syndrome (PWS/AS) region confers a risk of obesity, although the mechanism remains a mystery due to a lack of an animal model that accurately recreates the obesity phenotype. We performed detailed analyses of mice with duplication of PWS/AS locus (6 Mb) generated by chromosome engineering and found that animals with a paternal duplication of this region (patDp/+) show late-onset obesity, high sensitivity for high-fat diet, high levels of blood leptin and insulin without an increase in food intake. We show that prior to becoming obese, young patDp/+ mice already had enlarged white adipocytes. Transcriptome analysis of adipose tissue revealed an up-regulation of Secreted frizzled-related protein 5 (Sfrp5), known to promote adipogenesis. We additionally generated a new mouse model of paternal duplication focusing on a 3 Mb region (3 Mb patDp/+) within the PWS/AS locus. These mice recapitulate the obese phenotypes including expansion of visceral adipose tissue. Our results suggest paternally expressed genes in PWS/AS locus play a significant role for the obesity and identify new potential targets for future research and treatment of obesity.


Asunto(s)
Duplicación Cromosómica , Cromosomas Humanos Par 15/genética , Sitios Genéticos , Metabolismo de los Lípidos/genética , Obesidad , Animales , Modelos Animales de Enfermedad , Humanos , Ratones , Obesidad/genética , Obesidad/metabolismo , Obesidad/patología , Síndrome
3.
Genome Res ; 24(3): 390-400, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24398455

RESUMEN

Long-range regulatory interactions play an important role in shaping gene-expression programs. However, the genomic features that organize these activities are still poorly characterized. We conducted a large operational analysis to chart the distribution of gene regulatory activities along the mouse genome, using hundreds of insertions of a regulatory sensor. We found that enhancers distribute their activities along broad regions and not in a gene-centric manner, defining large regulatory domains. Remarkably, these domains correlate strongly with the recently described TADs, which partition the genome into distinct self-interacting blocks. Different features, including specific repeats and CTCF-binding sites, correlate with the transition zones separating regulatory domains, and may help to further organize promiscuously distributed regulatory influences within large domains. These findings support a model of genomic organization where TADs confine regulatory activities to specific but large regulatory domains, contributing to the establishment of specific gene expression profiles.


Asunto(s)
Sitios de Unión , Elementos de Facilitación Genéticos , Animales , Factor de Unión a CCCTC , Proteínas de Ciclo Celular/metabolismo , Proteínas Cromosómicas no Histona/metabolismo , Embrión de Mamíferos , Genoma , Ratones , Secuencias Reguladoras de Ácidos Nucleicos , Secuencias Repetitivas de Ácidos Nucleicos , Proteínas Represoras/metabolismo , Cohesinas
4.
Toxicol Lett ; 396: 1-10, 2024 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-38588756

RESUMEN

The surge in opioid-related deaths, driven predominantly by fentanyl and its synthetic derivatives, has become a critical public health concern, which is particularly evident in the United States. While the situation is less severe in Europe, the European Monitoring Centre for Drugs and Drug Addiction reports a rise in drug overdose deaths, with emerging concerns about the impact of fentanyl-related molecules. Synthetic opioids, initially designed for medical use, have infiltrated illicit markets due to their low production costs and high potency, with carfentanil posing additional threats, including potential chemical weaponization. Existing overdose mitigation heavily relies on naloxone, requiring timely intervention and caregiver presence, while therapeutic prevention strategies face many access challenges. To provide an additional treatment option, we propose the use of a fentanyl-specific monoclonal antibody (mAb), as a non-opioid method of prophylaxis against fentanyl and carfentanil. This mAb shows protection from opioid effects in a pre-clinical murine model. mAbs could emerge as a versatile countermeasure in civilian and biodefense settings, offering a novel approach to combat opioid-associated mortality.


Asunto(s)
Analgésicos Opioides , Anticuerpos Monoclonales , Fentanilo , Fentanilo/análogos & derivados , Fentanilo/inmunología , Animales , Ratones , Humanos
5.
BMC Genomics ; 14: 215, 2013 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-23547943

RESUMEN

BACKGROUND: Mammalian genes are regulated through the action of multiple regulatory elements, often distributed across large regions. The mechanisms that control the integration of these diverse inputs into specific gene expression patterns are still poorly understood. New approaches enabling the dissection of these mechanisms in vivo are needed. RESULTS: Here, we describe TRACER (http://tracerdatabase.embl.de), a resource that centralizes information from a large on-going functional exploration of the mouse genome with different transposon-associated regulatory sensors. Hundreds of insertions have been mapped to specific genomic positions, and their corresponding regulatory potential has been documented by analysis of the expression of the reporter sensor gene in mouse embryos. The data can be easily accessed and provides information on the regulatory activities present in a large number of genomic regions, notably in gene-poor intervals that have been associated with human diseases. CONCLUSIONS: TRACER data enables comparisons with the expression pattern of neighbouring genes, activity of surrounding regulatory elements or with other genomic features, revealing the underlying regulatory architecture of these loci. TRACER mouse lines can also be requested for in vivo transposition and chromosomal engineering, to analyse further regions of interest.


Asunto(s)
Bases de Datos Genéticas , Genoma , Animales , Mapeo Cromosómico , Internet , Ratones , Interfaz Usuario-Computador
6.
Cell Rep ; 42(2): 112049, 2023 02 28.
Artículo en Inglés | MEDLINE | ID: mdl-36719797

RESUMEN

Poorly immunogenic small molecules pose challenges for the production of clinically efficacious vaccines and antibodies. To address this, we generate an immunization platform derived from the immunogenic surface coat of the African trypanosome. Through sortase-based conjugation of the target molecules to the variant surface glycoprotein (VSG) of the trypanosome surface coat, we develop VSG-immunogen array by sortase tagging (VAST). VAST elicits antigen-specific memory B cells and antibodies in a murine model after deploying the poorly immunogenic molecule fentanyl as a proof of concept. We also develop a single-cell RNA sequencing (RNA-seq)-based computational method that synergizes with VAST to specifically identify memory B cell-encoded antibodies. All computationally selected antibodies bind to fentanyl with picomolar affinity. Moreover, these antibodies protect mice from fentanyl effects after passive immunization, demonstrating the ability of these two coupled technologies to elicit therapeutic antibodies to challenging immunogens.


Asunto(s)
Trypanosoma brucei brucei , Trypanosoma , Tripanosomiasis Africana , Animales , Ratones , Trypanosoma brucei brucei/genética , Tripanosomiasis Africana/tratamiento farmacológico , Analgésicos Opioides , Fentanilo/farmacología , Fentanilo/uso terapéutico , Glicoproteínas Variantes de Superficie de Trypanosoma , Inmunoterapia
7.
Am J Hum Genet ; 83(3): 388-400, 2008 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18771760

RESUMEN

Down syndrome (DS) is the most common cause of mental retardation. Many neural phenotypes are shared between DS individuals and DS mouse models; however, the common underlying molecular pathogenetic mechanisms remain unclear. Using a transchromosomic model of DS, we show that a 30%-60% reduced expression of Nrsf/Rest (a key regulator of pluripotency and neuronal differentiation) is an alteration that persists in trisomy 21 from undifferentiated embryonic stem (ES) cells to adult brain and is reproducible across several DS models. Using partially trisomic ES cells, we map this effect to a three-gene segment of HSA21, containing DYRK1A. We independently identify the same locus as the most significant eQTL controlling REST expression in the human genome. We show that specifically silencing the third copy of DYRK1A rescues Rest levels, and we demonstrate altered Rest expression in response to inhibition of DYRK1A expression or kinase activity, and in a transgenic Dyrk1A mouse. We reveal that undifferentiated trisomy 21 ES cells show DYRK1A-dose-sensitive reductions in levels of some pluripotency regulators, causing premature expression of transcription factors driving early endodermal and mesodermal differentiation, partially overlapping recently reported downstream effects of Rest +/-. They produce embryoid bodies with elevated levels of the primitive endoderm progenitor marker Gata4 and a strongly reduced neuroectodermal progenitor compartment. Our results suggest that DYRK1A-mediated deregulation of REST is a very early pathological consequence of trisomy 21 with potential to disturb the development of all embryonic lineages, warranting closer research into its contribution to DS pathology and new rationales for therapeutic approaches.


Asunto(s)
Síndrome de Down/metabolismo , Células Madre Embrionarias/patología , Dosificación de Gen , Proteínas Serina-Treonina Quinasas/fisiología , Proteínas Tirosina Quinasas/fisiología , Proteínas Represoras/fisiología , Animales , Diferenciación Celular , Modelos Animales de Enfermedad , Síndrome de Down/genética , Síndrome de Down/patología , Células Madre Embrionarias/fisiología , Regulación del Desarrollo de la Expresión Génica , Humanos , Ratones , Ratones Transgénicos , Células Madre Pluripotentes/patología , Células Madre Pluripotentes/fisiología , Proteínas Serina-Treonina Quinasas/genética , Proteínas Tirosina Quinasas/genética , Sitios de Carácter Cuantitativo , Proteínas Represoras/genética , Quinasas DyrK
8.
Blood ; 113(17): 3990-8, 2009 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-19088377

RESUMEN

The Rac1 and Rac2 GTPases play important roles in many processes including cytoskeletal reorganization, proliferation, and survival, and are required for B-cell development. Previous studies had shown that deficiency in Rac2 did not affect T-cell development, whereas the function of Rac1 in this process has not been investigated. We now show that simultaneous absence of both GTPases resulted in a very strong developmental block at the pre-TCR checkpoint and in defective positive selection. Unexpectedly, deficiency of Rac1 and Rac2 also resulted in the aberrant survival of thymocytes lacking expression of TCR beta, showing hallmarks of hyperactive Notch signaling. Furthermore, we found a similar novel phenotype in the absence of Vav1, Vav2, and Vav3, which function as guanine nucleotide exchange factors for Rac1 and Rac2. These results show that a pathway containing Vav and Rac proteins may negatively regulate Notch signaling during early thymic development.


Asunto(s)
Leucopoyesis/inmunología , Neuropéptidos/metabolismo , Linfocitos T/enzimología , Linfocitos T/inmunología , Proteínas de Unión al GTP rac/metabolismo , Animales , Proliferación Celular , Humanos , Interleucina-7/metabolismo , Ratones , Ratones Noqueados , Neuropéptidos/deficiencia , Neuropéptidos/genética , Receptores de Antígenos de Linfocitos T/genética , Receptores de Antígenos de Linfocitos T/inmunología , Receptores de Antígenos de Linfocitos T/metabolismo , Receptores Notch/metabolismo , Transducción de Señal/inmunología , Linfocitos T/citología , Timo/enzimología , Timo/inmunología , Factores de Tiempo , Técnicas de Cultivo de Tejidos , Proteínas de Unión al GTP rac/deficiencia , Proteínas de Unión al GTP rac/genética , Proteína de Unión al GTP rac1 , Proteína RCA2 de Unión a GTP
9.
Microorganisms ; 9(1)2021 Jan 11.
Artículo en Inglés | MEDLINE | ID: mdl-33440906

RESUMEN

The aim of this study was to examine the effect of aPDT with visual light (VIS) + water-filtered infrared A (wIRA) as a light source, and tetrahydroporphyrin-tetratosylate (THPTS) as a photosensitizer on in situ initial and mature oral biofilms. The samples were incubated, ex situ, with THPTS for two minutes, followed by irradiation with 200 mW cm - 2 VIS + wIRA for five minutes at 37 °C. The adherent microorganisms were quantified, and the biofilm samples were visualized using live/dead staining and confocal laser scanning microscopy (CLSM). The THPTS-mediated aPDT resulted in significant decreases in both the initially adherent microorganisms and the microorganisms in the mature oral biofilms, in comparison to the untreated control samples (>99.99% each; p = 0.018 and p = 0.0066, respectively). The remaining vital bacteria significantly decreased in the aPDT-treated biofilms during initial adhesion (vitality rate 9.4% vs. 71.2% untreated control, 17.28% CHX). Of the mature biofilms, 25.67% remained vital after aPDT treatment (81.97% untreated control, 16.44% CHX). High permeability of THPTS into deep layers could be shown. The present results indicate that the microbial reduction in oral initial and mature oral biofilms resulting from aPDT with VIS + wIRA in combination with THPTS has significant potential for the treatment of oral biofilm-associated diseases.

10.
Genes Chromosomes Cancer ; 48(1): 39-54, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-18828156

RESUMEN

Follicular lymphoma (FL) is characterized by a large number of chromosomal aberrations. However, their exact genomic extension and involved target genes remain to be determined. For this purpose, we used array-based intermediate-high resolution genomic profiling in combination with Affymetrix gene expression analysis. Tumor specimens from 128 FL patients were analyzed for the presence of genomic aberrations and the results were correlated to clinical data sets and mRNA expression levels. In 114 (89%) of the 128 analyzed cases, a total of 688 genomic aberrations (384 gains/amplifications and 304 losses) were detected. Frequent genomic aberrations were: -1p36 (18%), +2p15 (24%), -3q (14%), -6q (25%), +7p (19%), +7q (23%), +8q (14%), -9p (16%), -11q (15%), +12q (20%), -13q (11%), -17p (16%), +18p (18%), and +18q (28%). Critical segments of these imbalances were delineated to genomic fragments with a minimum size down to 0.2 Mb. By comparison of these with mRNA gene expression data, putative candidate genes were identified. Moreover, we found that deletions affecting the tumor suppressor gene CDKN2A/B on 9p21 were detected in nontransformed FL grade I-II. For this aberration as well as for -6q25 and -6q26, an association with inferior survival was observed.


Asunto(s)
Aberraciones Cromosómicas , Linfoma Folicular/genética , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Análisis de Varianza , Niño , Hibridación Genómica Comparativa , Femenino , Humanos , Hibridación Fluorescente in Situ , Estimación de Kaplan-Meier , Linfoma Folicular/metabolismo , Linfoma Folicular/mortalidad , Linfoma Folicular/patología , Masculino , Persona de Mediana Edad , Adulto Joven
11.
BMC Dev Biol ; 7: 131, 2007 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-18047653

RESUMEN

BACKGROUND: Down syndrome (DS), caused by trisomy of human chromosome 21 (HSA21), is the most common genetic cause of mental retardation in humans. Among complex phenotypes, it displays a number of neural pathologies including smaller brain size, reduced numbers of neurons, reduced dendritic spine density and plasticity, and early Alzheimer-like neurodegeneration. Mouse models for DS show behavioural and cognitive defects, synaptic plasticity defects, and reduced hippocampal and cerebellar neuron numbers. Early postnatal development of both human and mouse-model DS shows the reduced capability of neuronal precursor cells to generate neurons. The exact molecular cause of this reduction, and the role played by increased dosage of individual HSA21 genes, remain unknown. RESULTS: We have subcutaneously injected mouse pluripotent ES cells containing a single freely segregating supernumerary human chromosome 21 (HSA21) into syngeneic mice, to generate transchromosomic teratomas. Transchromosomic cells and parental control cells were injected into opposite flanks of thirty mice in three independent experiments. Tumours were grown for 30 days, a time-span equivalent to combined intra-uterine, and early post-natal mouse development. When paired teratomas from the same animals were compared, transchromosomic tumours showed a three-fold lower percentage of neuroectodermal tissue, as well as significantly reduced mRNA levels for neuron specific (Tubb3) and glia specific (Gfap) genes, relative to euploid controls. Two thirds of transchromosomic tumours also showed a lack of PCR amplification with multiple primers specific for HSA21, which were present in the ES cells at the point of injection, thus restricting a commonly retained trisomy to less than a third of HSA21 genes. CONCLUSION: We demonstrate that a supernumerary chromosome 21 causes Inhibition of Neuroectodermal DIfferentiation (INDI) of pluripotent ES cells. The data suggest that trisomy of less than a third of HSA21 genes, in two chromosomal regions, might be sufficient to cause this effect.


Asunto(s)
Cromosomas Humanos Par 21/genética , Neuronas/metabolismo , Células Madre Pluripotentes/metabolismo , Teratoma/genética , Animales , Astrocitos/metabolismo , Astrocitos/patología , Diferenciación Celular , Línea Celular , Técnica del Anticuerpo Fluorescente , Proteína Ácida Fibrilar de la Glía/genética , Proteína Ácida Fibrilar de la Glía/metabolismo , Humanos , Ratones , Neoplasias Experimentales/genética , Neoplasias Experimentales/metabolismo , Neoplasias Experimentales/patología , Placa Neural/metabolismo , Placa Neural/patología , Neuronas/patología , Células Madre Pluripotentes/patología , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Teratoma/metabolismo , Teratoma/patología , Tubulina (Proteína)/genética , Tubulina (Proteína)/metabolismo
12.
Genom Data ; 5: 394-6, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26484295

RESUMEN

Obesity is not only associated with unhealthy lifestyles, but also linked to genetic predisposition. Previously, we generated an autism mouse model (patDp/+) that carries a 6.3 Mb paternal duplication homologous to the human 15q11-q13 locus. Chromosomal abnormalities in this region are known to cause autism spectrum disorder, Prader-Willi syndrome, and Angelman syndrome in humans. We found that, in addition to autistic-like behaviors, patDp/+ mice display late-onset obesity and hypersensitivity to a high-fat diet. These phenotypes are likely to be the results of genetic perturbations since the energy expenditures and food intakes of patDp/+ mice do not significantly differ from those of wild-type mice. Intriguingly, we found that an enlargement of adipose cells precedes the onset of obesity in patDp/+ mice. To understand the underlying molecular networks responsible for this pre-obese phenotype, we performed transcriptome profiling of white adipose tissue from patDp/+ and wild-type mice using microarray. We identified 230 genes as differentially expressed genes. Sfrp5 - a gene whose expression is positively correlated with adipocyte size, was found to be up-regulated, and Fndc5, a potent inducer of brown adipogenesis was identified to be the top down-regulated gene. Subsequent pathway analysis highlighted a set of 35 molecules involved in energy production, lipid metabolism, and small molecule biochemistry as the top candidate biological network responsible for the pre-obese phenotype of patDp/+. The microarray data were deposited in NCBI Gene Expression Omnibus database with accession number GSE58191. Ultimately, our dataset provides novel insights into the molecular mechanism of obesity and demonstrated that patDp/+ is a valuable mouse model for obesity research.

13.
Nat Genet ; 46(7): 753-8, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-24859337

RESUMEN

Cleft lip with or without cleft palate (CL/P) is one of the most common congenital malformations observed in humans, with 1 occurrence in every 500-1,000 births. A 640-kb noncoding interval at 8q24 has been associated with increased risk of non-syndromic CL/P in humans, but the genes and pathways involved in this genetic susceptibility have remained elusive. Using a large series of rearrangements engineered over the syntenic mouse region, we show that this interval contains very remote cis-acting enhancers that control Myc expression in the developing face. Deletion of this interval leads to mild alteration of facial morphology in mice and, sporadically, to CL/P. At the molecular level, we identify misexpression of several downstream genes, highlighting combined impact on the craniofacial developmental network and the general metabolic capacity of cells contributing to the future upper lip. This dual molecular etiology may account for the prominent influence of variants in the 8q24 region on human facial dysmorphologies.


Asunto(s)
Labio Leporino/genética , Fisura del Paladar/genética , Elementos de Facilitación Genéticos/genética , Cara/fisiopatología , Regulación de la Expresión Génica , Morfogénesis , Proteínas Proto-Oncogénicas c-myc/metabolismo , Animales , Proliferación Celular , Inmunoprecipitación de Cromatina , Labio Leporino/metabolismo , Labio Leporino/patología , Fisura del Paladar/metabolismo , Fisura del Paladar/patología , Embrión de Mamíferos/citología , Embrión de Mamíferos/metabolismo , Femenino , Predisposición Genética a la Enfermedad , Humanos , Hibridación in Situ , Masculino , Ratones , Ratones Endogámicos C57BL , Ratones Transgénicos , Proteínas Proto-Oncogénicas c-myc/genética , ARN Mensajero/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
14.
Dev Cell ; 24(5): 530-42, 2013 Mar 11.
Artículo en Inglés | MEDLINE | ID: mdl-23453598

RESUMEN

Fgf8 encodes a key signaling factor, and its precise regulation is essential for embryo patterning. Here, we identified the regulatory modules that control Fgf8 expression during mammalian embryogenesis. These enhancers are interspersed with unrelated genes along a large region of 220 kb; yet they act on Fgf8 only. Intriguingly, this region also contains additional genuine enhancer activities that are not transformed into gene expression. Using genomic engineering strategies, we showed that these multiple and distinct regulatory modules act as a coherent unit and influence genes depending on their position rather than on their promoter sequence. These findings highlight how the structure of a locus regulates the autonomous intrinsic activities of the regulatory elements it contains and contributes to their tissue and target specificities. We discuss the implications of such regulatory systems regarding the evolution of gene expression and the impact of human genomic structural variations.


Asunto(s)
Embrión de Mamíferos/metabolismo , Desarrollo Embrionario/genética , Elementos de Facilitación Genéticos/genética , Proteínas F-Box/genética , Factor 8 de Crecimiento de Fibroblastos/genética , Regulación del Desarrollo de la Expresión Génica , Proteínas Musculares/genética , Animales , Pollos , Embrión de Mamíferos/citología , Humanos , Hibridación in Situ , Ratones , Ratones Transgénicos , Músculo Esquelético/fisiología , Especificidad de Órganos , Regiones Promotoras Genéticas/genética , ARN Mensajero/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
15.
Nat Genet ; 43(4): 379-86, 2011 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-21423180

RESUMEN

We present here a Sleeping Beauty-based transposition system that offers a simple and efficient way to investigate the regulatory architecture of mammalian chromosomes in vivo. With this system, we generated several hundred mice and embryos, each with a regulatory sensor inserted at a random genomic position. This large sampling of the genome revealed the widespread presence of long-range regulatory activities along chromosomes, forming overlapping blocks with distinct tissue-specific expression potentials. The presence of tissue-restricted regulatory activities around genes with widespread expression patterns challenges the gene-centric view of genome regulation and suggests that most genes are modulated in a tissue-specific manner. The local hopping property of Sleeping Beauty provides a dynamic approach to map these regulatory domains at high resolution and, combined with Cre-mediated recombination, allows for the determination of their functions by engineering mice with specific chromosomal rearrangements.


Asunto(s)
Elementos Transponibles de ADN/genética , Técnicas Genéticas , Genoma , Animales , Mapeo Cromosómico , Elementos de Facilitación Genéticos , Femenino , Regulación del Desarrollo de la Expresión Génica , Genes Reporteros , Edad Gestacional , Humanos , Operón Lac , Ratones , Ratones Transgénicos , Embarazo , Secuencias Reguladoras de Ácidos Nucleicos , Transposasas/genética
16.
Immunity ; 23(3): 263-74, 2005 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16169499

RESUMEN

Vav1 is a guanine nucleotide exchange factor (GEF) for Rho-family GTPases, which is activated by tyrosine phosphorylation following TCR stimulation. Vav1-deficient mice have defects in positive and negative selection of thymocytes as well as TCR-induced proliferation in mature T cells, demonstrating a critical role for Vav1 in transducing TCR signals. Binding of phospholipids to the PH domain of Vav1 has been proposed to regulate its GEF activity in vitro. To test this model in vivo, we have generated mice carrying a point mutation in the PH domain of Vav1, and we show that they have defects in T cell development and activation. We demonstrate that the mutation affects the function of Vav1 as a GEF and perturbs PI3K-dependent pathways downstream of Vav1. Unexpectedly, the mutation selectively affects TCR-induced proliferation of CD4(+) but not CD8(+) T cells, demonstrating differences in the wiring of TCR signaling pathways between the two lineages.


Asunto(s)
Linfocitos T CD4-Positivos/citología , Linfocitos T CD8-positivos/citología , Proteínas de Ciclo Celular/inmunología , Linaje de la Célula/inmunología , Activación de Linfocitos/inmunología , Proteínas Proto-Oncogénicas/inmunología , Animales , Linfocitos T CD4-Positivos/inmunología , Linfocitos T CD8-positivos/inmunología , Proteínas de Ciclo Celular/genética , Diferenciación Celular/inmunología , Proliferación Celular , Citometría de Flujo , Immunoblotting , Ratones , Ratones Transgénicos , Mutación , Fosfatidilinositol 3-Quinasas/inmunología , Fosfatidilinositol 3-Quinasas/metabolismo , Proteínas Proto-Oncogénicas/genética , Proteínas Proto-Oncogénicas c-vav , Receptores de Antígenos de Linfocitos T/inmunología , Receptores de Antígenos de Linfocitos T/metabolismo
17.
J Biol Chem ; 280(47): 39474-84, 2005 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-16195235

RESUMEN

The role of Rac family proteins in platelet spreading on matrix proteins under static and flow conditions has been investigated by using Rac-deficient platelets. Murine platelets form filopodia and undergo limited spreading on fibrinogen independent of Rac1 and Rac2. In the presence of thrombin, marked lamellipodia formation is observed on fibrinogen, which is abrogated in the absence of Rac1. However, Rac1 is not required for thrombin-induced aggregation or elevation of F-actin levels. Formation of lamellipodia on collagen and laminin is also Rac1-dependent. Analysis of platelet adhesion dynamics on collagen under flow conditions in vitro revealed that Rac1 is required for platelet aggregate stability at arterial rates of shear, as evidenced by a dramatic increase in platelet embolization. Furthermore, studies employing intravital microscopy demonstrated that Rac1 plays a critical role in the development of stable thrombi at sites of vascular injury in vivo. Thus, our data demonstrated that Rac1 is essential for lamellipodia formation in platelets and indicated that Rac1 is required for aggregate integrity leading to thrombus formation under physiologically relevant levels of shear both in vitro and in vivo.


Asunto(s)
Plaquetas/metabolismo , Plaquetas/ultraestructura , Neuropéptidos/sangre , Seudópodos/metabolismo , Seudópodos/ultraestructura , Proteínas de Unión al GTP rac/sangre , Proteína de Unión al GTP rac1/sangre , Animales , Fibrinógeno , Hemorreología , Humanos , Técnicas In Vitro , Ratones , Ratones Noqueados , Neuropéptidos/deficiencia , Neuropéptidos/genética , Adhesividad Plaquetaria , Agregación Plaquetaria , Propiedades de Superficie , Proteínas de Unión al GTP rac/deficiencia , Proteínas de Unión al GTP rac/genética , Proteína RCA2 de Unión a GTP
18.
Science ; 309(5743): 2033-7, 2005 Sep 23.
Artículo en Inglés | MEDLINE | ID: mdl-16179473

RESUMEN

Aneuploidies are common chromosomal defects that result in growth and developmental deficits and high levels of lethality in humans. To gain insight into the biology of aneuploidies, we manipulated mouse embryonic stem cells and generated a trans-species aneuploid mouse line that stably transmits a freely segregating, almost complete human chromosome 21 (Hsa21). This "transchromosomic" mouse line, Tc1, is a model of trisomy 21, which manifests as Down syndrome (DS) in humans, and has phenotypic alterations in behavior, synaptic plasticity, cerebellar neuronal number, heart development, and mandible size that relate to human DS. Transchromosomic mouse lines such as Tc1 may represent useful genetic tools for dissecting other human aneuploidies.


Asunto(s)
Aneuploidia , Cromosomas Humanos Par 21 , Modelos Animales de Enfermedad , Síndrome de Down , Ingeniería Genética , Ratones Transgénicos , Animales , Conducta Animal , Encéfalo/patología , Recuento de Células , Línea Celular , Quimera , Síndrome de Down/genética , Síndrome de Down/fisiopatología , Embrión de Mamíferos/citología , Huesos Faciales/patología , Femenino , Expresión Génica , Marcadores Genéticos , Cardiopatías Congénitas/embriología , Hipocampo/fisiopatología , Humanos , Potenciación a Largo Plazo , Activación de Linfocitos , Masculino , Aprendizaje por Laberinto , Memoria , Ratones , Ratones Endogámicos , Neuronas/citología , Análisis de Secuencia por Matrices de Oligonucleótidos , Fenotipo , Cráneo/patología , Células Madre , Transmisión Sináptica , Linfocitos T/inmunología
19.
Science ; 305(5687): 1150-3, 2004 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-15326354

RESUMEN

Upon maturation, dendritic cells (DCs) acquire the unique ability to activate naïve T cells. We used time-lapse video microscopy and two-photon imaging of intact lymph nodes to show that after establishing initial contact between their dendrites and naïve T lymphocytes, mature DCs migrate toward the contacted lymphocytes. Subsequently, the DCs tightly entrap the T cells within a complex net of membrane extensions. The Rho family guanosine triphosphatases Rac1 and Rac2 but not Rho itself control the formation of dendrites in mature DCs, their polarized short-range migration toward T cells, and T cell priming.


Asunto(s)
Linfocitos T CD4-Positivos/inmunología , Células Dendríticas/fisiología , Activación de Linfocitos , Proteínas de Unión al GTP rac/metabolismo , Proteína de Unión al GTP rac1/metabolismo , Animales , Linfocitos T CD4-Positivos/fisiología , Comunicación Celular , Polaridad Celular , Extensiones de la Superficie Celular/fisiología , Extensiones de la Superficie Celular/ultraestructura , Citoesqueleto/fisiología , Células Dendríticas/inmunología , Células Dendríticas/ultraestructura , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Microscopía por Video , Proteínas de Unión al GTP rac/antagonistas & inhibidores , Proteínas de Unión al GTP rac/genética , Proteína de Unión al GTP rac1/antagonistas & inhibidores , Proteína de Unión al GTP rac1/genética , Proteínas de Unión al GTP rho/antagonistas & inhibidores , Proteínas de Unión al GTP rho/metabolismo , Proteína RCA2 de Unión a GTP
20.
Science ; 302(5644): 459-62, 2003 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-14564011

RESUMEN

The Rac1 guanosine triphosphatase (GTPase) has been implicated in multiple cellular functions, including actin dynamics, proliferation, apoptosis, adhesion, and migration resulting from signaling by multiple receptors, including the B cell antigen receptor (BCR). We used conditional gene targeting to generate mice with specific Rac1 deficiency in the B cell lineage. In the absence of both Rac1 and the highly related Rac2, B cell development was almost completely blocked. Both GTPases were required to transduce BCR signals leading to proliferation, survival and up-regulation of BAFF-R, a receptor for BAFF, a key survival molecule required for B cell development and maintenance.


Asunto(s)
Linfocitos B/fisiología , Receptores de Antígenos de Linfocitos B/metabolismo , Transducción de Señal , Proteínas de Unión al GTP rac/fisiología , Proteína de Unión al GTP rac1/fisiología , Animales , Factor Activador de Células B , Receptor del Factor Activador de Células B , Subgrupos de Linfocitos B/fisiología , Diferenciación Celular , División Celular , Linaje de la Célula , Supervivencia Celular , Femenino , Marcación de Gen , Activación de Linfocitos , Masculino , Proteínas de la Membrana/metabolismo , Ratones , Ratones Endogámicos C57BL , Receptores del Factor de Necrosis Tumoral/genética , Receptores del Factor de Necrosis Tumoral/metabolismo , Recombinación Genética , Bazo/citología , Factor de Necrosis Tumoral alfa/metabolismo , Regulación hacia Arriba , Proteína RCA2 de Unión a GTP
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