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1.
Theor Appl Genet ; 136(3): 30, 2023 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-36892603

RESUMEN

KEY MESSAGE: Maximizing CDmean and Avg_GRM_self were the best criteria for training set optimization. A training set size of 50-55% (targeted) or 65-85% (untargeted) is needed to obtain 95% of the accuracy.  With the advent of genomic selection (GS) as a widespread breeding tool, mechanisms to efficiently design an optimal training set for GS models became more relevant, since they allow maximizing the accuracy while minimizing the phenotyping costs. The literature described many training set optimization methods, but there is a lack of a comprehensive comparison among them. This work aimed to provide an extensive benchmark among optimization methods and optimal training set size by testing a wide range of them in seven datasets, six different species, different genetic architectures, population structure, heritabilities, and with several GS models to provide some guidelines about their application in breeding programs. Our results showed that targeted optimization (uses information from the test set) performed better than untargeted (does not use test set data), especially when heritability was low. The mean coefficient of determination was the best targeted method, although it was computationally intensive. Minimizing the average relationship within the training set was the best strategy for untargeted optimization. Regarding the optimal training set size, maximum accuracy was obtained when the training set was the entire candidate set. Nevertheless, a 50-55% of the candidate set was enough to reach 95-100% of the maximum accuracy in the targeted scenario, while we needed a 65-85% for untargeted optimization. Our results also suggested that a diverse training set makes GS robust against population structure, while including clustering information was less effective. The choice of the GS model did not have a significant influence on the prediction accuracies.


Asunto(s)
Modelos Genéticos , Selección Genética , Fenotipo , Genoma , Genómica/métodos , Genotipo
2.
Neurochem Res ; 48(1): 295-304, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36098890

RESUMEN

Paclitaxel (PTX) is a frequently used anticancer drug that causes peripheral neuropathy. Transient receptor potential ankyrin 1 (TRPA1), a plasma membrane calcium channel, has been associated with PTX toxicity and with other chemotherapy agents such as oxaliplatin and vincristine. However, the effect of PTX on the functional expression and calcium currents of TRPA1 has not been determined. The present study shows the effect of PTX on TRPA1 activity in a neuronal cell line (SH-SY5Y). The effect of PTX on the expression of TRPA1 was assessed through quantitative PCR and Western blot analyses to determine the relative mRNA and protein expression levels. To assess the effect on calcium flux and currents, cells were exposed to PTX; simultaneously, a specific agonist and antagonist of TRPA1 were added to evaluate the differential response in exposed versus control cells. To assess the effect of PKA, PKC and PI3K on PTX-induced TRPA1 increased activity, selective inhibitors were added to these previous experiments. PTX increased the mRNA and protein expression of TRPA1 as well as the TRPA1-mediated Ca2+ currents and intracellular Ca2+ concentrations. This effect was dependent on AITC (a selective specific agonist) and was abolished with HC-030031 (a selective specific antagonist). The inhibition of PKA and PKC reduced the effect of PTX on the functional expression of TRPA1, whereas the inhibition of PI3K had no effects. PTX-induced neuropathy involves TRPA1 activity through an increase in functional expression and is regulated by PKA and PKC signaling. These findings support the role of the TRPA1 channel in the mechanisms altered by PTX, which can be involved in the process that lead to chemotherapy-induced neuropathy.


Asunto(s)
Antineoplásicos , Neuroblastoma , Canales de Potencial de Receptor Transitorio , Humanos , Paclitaxel/farmacología , Canal Catiónico TRPA1/metabolismo , Calcio/metabolismo , Canales de Potencial de Receptor Transitorio/genética , Canales de Potencial de Receptor Transitorio/metabolismo , Proteínas del Citoesqueleto/metabolismo , ARN Mensajero/metabolismo , Fosfatidilinositol 3-Quinasas/metabolismo
3.
Microb Ecol ; 86(1): 670-686, 2023 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-35705744

RESUMEN

Host microbial communities are increasingly seen as an important component of host health. In amphibians, the first land vertebrates that are threatened by a fungal skin disease globally, our understanding of the factors influencing the microbiome of amphibian skin remains incomplete because recent studies have focused almost exclusively on bacteria, and little information exists on fungal communities associated with wild amphibian species. In this study, we describe the effects of host phylogeny, climate, geographic distance, and infection with a fungal pathogen on the composition and structure of bacterial and fungal communities in seven tropical salamander species that occur in the Trans-Mexican Volcanic Belt of Central Mexico. We find that host phylogenetic relatedness is correlated with bacterial community composition while a composite climatic variable of temperature seasonality and precipitation is significantly associated with fungal community composition. We also estimated co-occurrence networks for bacterial and fungal taxa and found differences in the degree of connectivity and the distribution of negative associations between the two networks. Our results suggest that different factors may be responsible for structuring the bacterial and fungal communities of amphibian skin and that the inclusion of fungi in future studies could shed light on important functional interactions within the microbiome.


Asunto(s)
Micobioma , Urodelos , Animales , Urodelos/microbiología , México , Filogenia , Anfibios/microbiología , Bacterias/genética , Piel/microbiología
4.
J Clin Rheumatol ; 29(5): e59-e70, 2023 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-37005371

RESUMEN

OBJECTIVE: The aim of this study was to provide an evidence-based framework to guide health care professionals treating patients under glucocorticoid (GC) therapy and develop guidelines for the prevention and treatment of glucocorticoid-induced osteoporosis (GIO) in postmenopausal women and men aged ≥50 years. METHODS: An expert panel on bone diseases designed a series of clinically meaningful questions following the PICO (Population, Intervention, Comparator, and Outcome) structure. Using GRADE (Grading of Recommendations Assessment, Development, and Evaluation) methodology, we made a systematic literature review, extracted and summarized the effect estimates, and graded the quality of the evidence. The expert panel voted each PICO question and made recommendations after reaching an agreement of at least 70%. RESULTS: Seventeen recommendations (9 strong and 8 conditional) and 8 general principles were developed for postmenopausal women and men aged ≥50 years under GC treatment. Bone mineral density (BMD), occurrence of fragility fractures, probability of fracture at 10 years by Fracture Risk Assessment Tool, and other screening factors for low BMD are recommended for patient evaluation and stratification according to fragility fracture risk. The treatment of patients under GC therapy should include counseling on lifestyle habits and strict control of comorbidities. The goal of GIO treatment is the nonoccurrence of new fragility fractures as well as to increase or maintain BMD in certain clinical situations. This was considered for the therapeutic approach in different clinical scenarios. CONCLUSIONS: This GIO guideline provides evidence-based guidance for health care providers treating patients.


Asunto(s)
Glucocorticoides , Osteoporosis , Masculino , Humanos , Femenino , Persona de Mediana Edad , Anciano , Glucocorticoides/uso terapéutico , Posmenopausia , Osteoporosis/inducido químicamente , Osteoporosis/diagnóstico , Osteoporosis/tratamiento farmacológico , Densidad Ósea
5.
Res Sports Med ; 31(1): 74-85, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-34128446

RESUMEN

The main purpose of the present study was to determine the association of physical activity (PA) patterns prior to COVID-19 confinement with severe respiratory distress consistent with COVID-19 symptoms. Participants were recruited by sending a survey through various social network channels via the snowball method. A voluntary sample of 420 individuals consisting of 199 men and 221 women from the Spanish national territory participated in this study. Some factors, such as being overweight and obese were related to the presence of a greater number of symptoms associated with COVID-19. Interestingly, it was observed that not performing moderate or vigorous PA increased the risk of COVID-19 symptoms. Consequently, when the effect of the practise of PA was evaluated in terms of the number of practises per week and in minutes per practise per week, a protective effect was observed, where moderate PA >150 min per week reported an inverse association with hospitalization for respiratory symptoms (RR: 95%CI: 0.24, 0.05-1.04, P = 0.05). Likewise, overweight (RR: 16.3, 95%CI: 1.93-137.9, P = 0.01), obesity (RR: 19.1, 95%CI: 1.63-222.5, P = 0.019) and non-performance of moderate PA (RR: 4.12, 95%CI; 0.95-17.76, P = 0.05) reported positive associations with hospitalization for respiratory symptoms. Thus, the practise of moderate PA (>150 min per week) is a protective factor against hospitalization for respiratory symptoms consistent with COVID-19 symptoms.


Asunto(s)
COVID-19 , Masculino , Humanos , Femenino , COVID-19/epidemiología , COVID-19/prevención & control , Sobrepeso/epidemiología , Ejercicio Físico , Obesidad/epidemiología , Encuestas y Cuestionarios
6.
Rheumatology (Oxford) ; 61(11): 4427-4436, 2022 11 02.
Artículo en Inglés | MEDLINE | ID: mdl-35166821

RESUMEN

OBJECTIVES: To assess efficacy and safety of biologic therapy (BT) in neurobehçet's disease (NBD) refractory to glucocorticoids and at least one conventional immunosuppressive drug. METHODS: Open-label, national, multicentre study. NBD diagnosis was based on the International Consensus Recommendation criteria. Outcome variables were efficacy and safety. Main efficacy outcome was clinical remission. Other outcome variables analysed were glucocorticoid-sparing effect and improvement in laboratory parameters. RESULTS: We studied 41 patients [21 women; age 40.6 (10.8) years]. Neurological damage was parenchymal (n = 33, 80.5%) and non-parenchymal (n = 17, 41.5%). First BTs used were infliximab (n = 19), adalimumab (n = 14), golimumab (n = 3), tocilizumab (n = 3) and etanercept (n = 2). After 6 months of BT, neurological remission was complete (n = 23, 56.1%), partial (n = 15, 37.6%) and no response (n = 3, 7.3%). In addition, median (IQR) dose of oral prednisone decreased from 60 (30-60) mg/day at the initial visit to 5 (3.8-10) mg/day after 6 months (P < 0.001). It was also the case for mean erythrocyte sedimentation rate [31.5 (25.6)-15.3 (11.9) mm/1st h, P = 0.011] and median (IQR) C-reactive protein [1.4 (0.2-12.8) to 0.3 (0.1-3) mg/dl, P = 0.001]. After a mean follow-up of 57.5 months, partial or complete neurological remission persisted in 37 patients (90.2%). BT was switched in 22 cases (53.6%) due to inefficacy (n = 16) or adverse events (AEs) (n = 6) and discontinued due to complete prolonged remission (n = 3) or severe AE (n = 1). Serious AEs were observed in two patients under infliximab treatment. CONCLUSIONS: BT appears to be effective and relatively safe in refractory NBD.


Asunto(s)
Terapia Biológica , Inmunosupresores , Humanos , Femenino , Adulto , Infliximab/uso terapéutico , Adalimumab/uso terapéutico , Etanercept/uso terapéutico , Inmunosupresores/uso terapéutico , Glucocorticoides , Resultado del Tratamiento , Estudios Multicéntricos como Asunto
7.
Theor Appl Genet ; 135(2): 405-419, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-34807267

RESUMEN

KEY MESSAGE: New forms of the coefficient of determination can help to forecast the accuracy of genomic prediction and optimize experimental designs in multi-environment trials with genotype-by-environment interactions. In multi-environment trials, the relative performance of genotypes may vary depending on the environmental conditions, and this phenomenon is commonly referred to as genotype-by-environment interaction (G[Formula: see text]E). With genomic prediction, G[Formula: see text]E can be accounted for by modeling the genetic covariance between trials, even when the overall experimental design is highly unbalanced between trials, thanks to the genomic relationship between genotypes. In this study, we propose new forms of the coefficient of determination (CD, i.e., the expected model-based square correlation between a genetic value and its corresponding prediction) that can be used to forecast the genomic prediction reliability of genotypes, both for their trial-specific performance and their mean performance. As the expected prediction reliability based on these new CD criteria is generally a good approximation of the observed reliability, we demonstrate that they can be used to optimize multi-environment trials in the presence of G[Formula: see text]E. In addition, this reliability may be highly variable between genotypes, especially in unbalanced designs with complex pedigree relationships between genotypes. Therefore, it can be useful for breeders to assess it before selecting genotypes based on their predicted genetic values. Using a wheat population evaluated both for simulated and phenology traits, and two maize populations evaluated for grain yield, we illustrate this approach and confirm the value of our new CD criteria.


Asunto(s)
Fitomejoramiento , Proyectos de Investigación , Genómica , Genotipo , Modelos Genéticos , Fenotipo , Reproducibilidad de los Resultados
8.
Theor Appl Genet ; 135(10): 3583-3595, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-36018343

RESUMEN

KEY MESSAGE: We found two loci on chromosomes 2BS and 6AL that significantly contribute to stripe rust resistance in current European winter wheat germplasm. Stripe or yellow rust, caused by the fungus Puccinia striiformis Westend f. sp. tritici, is one of the most destructive wheat diseases. Sustainable management of wheat stripe rust can be achieved through the deployment of rust resistant cultivars. To detect effective resistance loci for use in breeding programs, an association mapping panel of 230 winter wheat cultivars and breeding lines from Northern and Central Europe was employed. Genotyping with the Illumina® iSelect® 25 K Infinium® single nucleotide polymorphism (SNP) genotyping array yielded 8812 polymorphic markers. Structure analysis revealed two subpopulations with 92 Austrian breeding lines and cultivars, which were separated from the other 138 genotypes from Germany, Norway, Sweden, Denmark, Poland, and Switzerland. Genome-wide association study for adult plant stripe rust resistance identified 12 SNP markers on six wheat chromosomes which showed consistent effects over several testing environments. Among these, two marker loci on chromosomes 2BS (RAC875_c1226_652) and 6AL (Tdurum_contig29607_413) were highly predictive in three independent validation populations of 1065, 1001, and 175 breeding lines. Lines with the resistant haplotype at both loci were nearly free of stipe rust symptoms. By using mixed linear models with those markers as fixed effects, we could increase predictive ability in the three populations by 0.13-0.46 compared to a standard genomic best linear unbiased prediction approach. The obtained results facilitate an efficient selection for stripe rust resistance against the current pathogen population in the Northern and Central European winter wheat gene pool.


Asunto(s)
Basidiomycota , Triticum , Mapeo Cromosómico , Resistencia a la Enfermedad/genética , Estudio de Asociación del Genoma Completo , Genómica , Desequilibrio de Ligamiento , Fitomejoramiento , Enfermedades de las Plantas/genética , Enfermedades de las Plantas/microbiología , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo , Triticum/genética , Triticum/microbiología
9.
Arch Microbiol ; 204(6): 344, 2022 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-35596088

RESUMEN

Thurincin H is a bacteriocin produced by Bacillus thuringiensis, it is encoded in a group of ten genes, most of which have been characterized experimentally or by homology. However, the activity of the thnI gene encoding a 95 amino acid ORF remains unknown. In this work, the thnI gene was cloned under the regulation of two promoters and transformed into a sensitive strain to determine if it acts as an immunity protein. In addition, a deletion mutant without the thnI gene was used to test whether thnI is required or not for the biosynthesis of thurincin H. It was concluded that thnI does not provide immunity and is not required to produce thurincin H.


Asunto(s)
Bacillus thuringiensis , Bacteriocinas , Bacillus thuringiensis/química , Proteínas Bacterianas/metabolismo , Bacteriocinas/biosíntesis , Regiones Promotoras Genéticas
10.
J Appl Microbiol ; 132(4): 3049-3057, 2022 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-34967963

RESUMEN

AIMS: The objective of this study was to produce thurincin H, ChiA74 and Cry proteins together using Bacillus thuringiensis subsp. kurstaki HD1 as a heterologous host. METHODS AND RESULTS: pSTAB-ThurH and pSTAB-ChiA74 constructs were designed to produce thurincin H and chitinase, respectively, at the sporulation phase. They were transformed into Bt HD1 generating the recombinant strains HD1/pSTAB-ThurH and HD1/pSTAB-ThurH/pSTAB-ChiA74. Antimicrobial and chitinolytic activity tests were performed with recombinant strains. Both strains were able to produce thurincin H up to 72 h with antibacterial activity of ~4000 U mg-1 . The HD1/pSTAB-ThurH/pSTAB-ChiA74 strain also showed chitinolytic activity of ~23 mU mg-1 at 72 h. All B. thuringiensis strains exhibited crystal formation at 72, and 96 h. In addition, the application of thurincin H in corn seeds increased the germination percentage and root length by 7% and 10%, respectively. CONCLUSIONS: We showed that is possible to produce three proteins of biotechnological interest at the sporulation stage in B. thuringiensis, which two of them (thurincin H, and ChiA74) are naturally expressed in the vegetative stage. SIGNIFICANCE AND IMPACT OF THE STUDY: These results form the basis for developing of a biocontrol and biostimulator product that can be used as an alternative for chemical application.


Asunto(s)
Bacillus thuringiensis , Bacteriocinas , Quitinasas , Bacillus thuringiensis/química , Proteínas Bacterianas/química , Quitinasas/genética , Quitinasas/metabolismo , Endotoxinas/genética , Proteínas Hemolisinas/metabolismo
11.
Ecotoxicol Environ Saf ; 245: 114090, 2022 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-36162350

RESUMEN

Air pollution includes polycyclic aromatic hydrocarbons (PAHs), which have been correlated to endocrine disruptor pathways during early pregnancy. PAHs have been found in the placenta and cord blood, which may affect the hormones involved in placental development. We studied the effects of some airborne PAHs on beta human chorionic gonadotropin (ß-hCG) and progesterone production by using a syncytial BeWo cell line as a placental model. PAH congeners were spiked in silicon rubber membrane (SRMs) and were then introduced into the cell medium by the passive dosing method to reach a freely dissolved concentration for BeWo cell exposure. Ultrahigh-performance liquid chromatography coupled with a diode array detector was used to analyze the PAHs, and electrochemiluminescence was used to test the hormone levels. Our results showed that passive dosing can deliver low levels of PAH congeners in the cell medium, which allowed us to calculate the individual release constants at equilibrium and to estimate their effects. Benzo[a]pyrene was released quickly from the SRMs to the cell medium, which can be attributed to its lipophilic properties. The PAHs were shown to decrease the ß-hCG level in the short term and progesterone level in the long term, so they may serve as a pathway for endocrine disorder in trophoblastic cells. This approximation may explain observations of impaired endometrium receptivity and placental dysfunction, which enhance adverse pregnancy outcomes such as embryonic mortality and intrauterine growth restriction.


Asunto(s)
Disruptores Endocrinos , Hidrocarburos Policíclicos Aromáticos , Benzo(a)pireno/análisis , Línea Celular , Gonadotropina Coriónica/análisis , Gonadotropina Coriónica/metabolismo , Gonadotropina Coriónica/farmacología , Disruptores Endocrinos/análisis , Femenino , Humanos , Técnicas In Vitro , Placenta/metabolismo , Hidrocarburos Policíclicos Aromáticos/análisis , Embarazo , Progesterona/metabolismo , Goma , Silicio/farmacología
12.
Mol Pharmacol ; 100(3): 258-270, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-34321341

RESUMEN

Neuronal calcium sensor 1 (NCS1), a calcium-binding protein, and transient receptor potential V4 (TRPV4), a plasma membrane calcium channel, are fundamental in the regulation of calcium homeostasis. The interactions of these proteins and their regulation by paclitaxel (PTX) were investigated using biochemical, pharmacological, and electrophysiological approaches in both a breast cancer epithelial cell model and a neuronal model. TRPV4 and NCS1 reciprocally immunoprecipitated each other, suggesting that they make up a signaling complex. The functional consequence of this physical association was that TRPV4 currents increased with increased NCS1 expression. Calcium fluxes through TRPV4 correlated with the magnitude of TRPV4 currents, and these calcium fluxes depended on NCS1 expression levels. Exposure to PTX amplified the acute effects of TRPV4 expression, currents, and calcium fluxes but decreased the expression of NCS1. These findings augment the understanding of the properties of TRPV4, the role of NCS1 in the regulation of TRPV4, and the cellular mechanisms of PTX-induced neuropathy. SIGNIFICANCE STATEMENT: TRPV4 and NCS1 physically and functionally interact. Increased expression of NCS1 enhances TRPV4-dependent currents, which are further amplified by treatment with the chemotherapeutic drug paclitaxel, an effect associated with adverse effects of chemotherapy, including neuropathy.


Asunto(s)
Antineoplásicos Fitogénicos/farmacología , Proteínas Sensoras del Calcio Neuronal/metabolismo , Neuropéptidos/metabolismo , Paclitaxel/farmacología , Canales Catiónicos TRPV/metabolismo , Antineoplásicos Fitogénicos/efectos adversos , Calcio/metabolismo , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Fenómenos Electrofisiológicos , Humanos , Proteínas Sensoras del Calcio Neuronal/genética , Neuropéptidos/genética , Paclitaxel/efectos adversos , Transducción de Señal/efectos de los fármacos , Canales Catiónicos TRPV/genética
13.
J Cell Sci ; 132(13)2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-31263077

RESUMEN

It is becoming increasingly evident that most cell types are capable of forming and releasing multiple distinct classes of membrane-enclosed packages, referred to as extracellular vesicles (EVs), as a form of intercellular communication. Microvesicles (MVs) represent one of the major classes of EVs and are formed by the outward budding of the plasma membrane. The second major class of EVs, exosomes, are produced as components of multivesicular bodies (MVBs) and are released from cells when MVBs fuse with the cell surface. Both MVs and exosomes have been shown to contain proteins, RNA transcripts, microRNAs and even DNA that can be transferred to other cells and thereby trigger a broad range of cellular activities and biological responses. However, EV biogenesis is also frequently de-regulated in different pathologies, especially cancer, where MVs and exosomes have been suggested to promote tumor cell growth, therapy resistance, invasion and even metastasis. In this Review, we highlight some of the recent advances in this rapidly emerging and exciting field of cell biology, focusing on the underlying mechanisms that drive MV and exosome formation and release, with a particular emphasis on how EVs potentially impact different aspects of cancer progression and stem cell biology.


Asunto(s)
Vesículas Extracelulares/metabolismo , Animales , Reprogramación Celular , Progresión de la Enfermedad , Desarrollo Embrionario , Humanos , Neoplasias/metabolismo , Neoplasias/patología , Medicina Regenerativa
14.
BMC Plant Biol ; 21(1): 259, 2021 Jun 05.
Artículo en Inglés | MEDLINE | ID: mdl-34090337

RESUMEN

BACKGROUND: Nitrogen (N) and phosphorus (P) are macronutrients essential for crop growth and productivity. In cultivated fields, N and P levels are rarely sufficient, contributing to the gap between realized and potential production. Fertilizer application increases nutrient availability, but is not available to all farmers, nor are current rates of application sustainable or environmentally desirable. Transcriptomic studies of cereal crops have revealed dramatic responses to either low N or low P single stress treatments. In the field, however, levels of both N and P may be suboptimal. The interaction between N and P starvation responses remains to be fully characterized. RESULTS: We characterized growth and root and leaf transcriptomes of young maize plants under nutrient replete, low N, low P or combined low NP conditions. We identified 1555 genes to respond to our nutrient treatments, in one or both tissues. A large group of genes, including many classical P starvation response genes, were regulated antagonistically between low N and P conditions. An additional experiment over a range of N availability indicated that a mild reduction in N levels was sufficient to repress the low P induction of P starvation genes. Although expression of P transporter genes was repressed under low N or low NP, we confirmed earlier reports of P hyper accumulation under N limitation. CONCLUSIONS: Transcriptional responses to low N or P were distinct, with few genes responding in a similar way to the two single stress treatments. In combined NP stress, the low N response dominated, and the P starvation response was largely suppressed. A mild reduction in N availability was sufficient to repress the induction of P starvation associated genes. We conclude that activation of the transcriptional response to P starvation in maize is contingent on N availability.


Asunto(s)
Nitrógeno/farmacología , Fósforo/farmacología , Zea mays/efectos de los fármacos , Zea mays/crecimiento & desarrollo , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Nitrógeno/administración & dosificación , Fósforo/administración & dosificación , Hojas de la Planta/crecimiento & desarrollo , Hojas de la Planta/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/metabolismo , Plantones/crecimiento & desarrollo , Estrés Fisiológico/efectos de los fármacos , Zea mays/metabolismo
15.
Theor Appl Genet ; 134(11): 3595-3609, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34341832

RESUMEN

KEY MESSAGE: The strong genetic structure observed in Mediterranean oats affects the predictive ability of genomic prediction as well as the performance of training set optimization methods. In this study, we investigated the efficiency of genomic prediction and training set optimization in a highly structured population of cultivars and landraces of cultivated oat (Avena sativa) from the Mediterranean basin, including white (subsp. sativa) and red (subsp. byzantina) oats, genotyped using genotype-by-sequencing markers and evaluated for agronomic traits in Southern Spain. For most traits, the predictive abilities were moderate to high with little differences between models, except for biomass for which Bayes-B showed a substantial gain compared to other models. The consistency between the structure of the training population and the population to be predicted was key to the predictive ability of genomic predictions. The predictive ability of inter-subspecies predictions was indeed much lower than that of intra-subspecies predictions for all traits. Regarding training set optimization, the linear mixed model optimization criteria (prediction error variance (PEVmean) and coefficient of determination (CDmean)) performed better than the heuristic approach "partitioning around medoids," even under high population structure. The superiority of CDmean and PEVmean could be explained by their ability to adapt the representation of each genetic group according to those represented in the population to be predicted. These results represent an important step towards the implementation of genomic prediction in oat breeding programs and address important issues faced by the genomic prediction community regarding population structure and training set optimization.


Asunto(s)
Avena/genética , Genética de Población , Genoma de Planta , Modelos Genéticos , Teorema de Bayes , Grano Comestible/genética , Genómica/métodos , Genotipo , Región Mediterránea , Fenotipo , Fitomejoramiento , España
16.
Ann Hematol ; 100(3): 825-830, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33409623

RESUMEN

Among the different biomarkers predicting response in chronic lymphocytic leukemia (CLL), the most influential parameters are the mutational status of the IGHV genes and the presence of TP53 gene disruptions. Nevertheless, these important assessments are not readily available in most centers dealing with CLL patients. To provide this molecular testing across the country, the Spanish Cooperative Group on CLL (GELLC) established a network of four analytical reference centers. A total of 2153 samples from 256 centers were analyzed over a period of 30 months. In 9% of the patients, we found pathological mutations in the TP53 gene, whereas 48.96% were classified as IGHV unmutated. Results of the satisfaction survey of the program showed a Net Promoter Score of 85.15. Building a national network for molecular testing in CLL allowed the CLL population a broad access to complex biomarkers analysis that should translate into a more accurate and informed therapeutic decision-making.


Asunto(s)
Servicios de Laboratorio Clínico/organización & administración , Análisis Mutacional de ADN , Cadenas Pesadas de Inmunoglobulina/genética , Leucemia Linfocítica Crónica de Células B/genética , Derivación y Consulta/organización & administración , Proteína p53 Supresora de Tumor/genética , Biomarcadores de Tumor/genética , Servicios de Laboratorio Clínico/provisión & distribución , Estudios de Cohortes , Redes Comunitarias/organización & administración , Análisis Mutacional de ADN/métodos , Humanos , Ciencia de la Implementación , Colaboración Intersectorial , Satisfacción en el Trabajo , Leucemia Linfocítica Crónica de Células B/diagnóstico , Leucemia Linfocítica Crónica de Células B/epidemiología , Técnicas de Diagnóstico Molecular/métodos , Mutación , Pronóstico , España/epidemiología , Encuestas y Cuestionarios
17.
Am J Dermatopathol ; 43(3): 191-197, 2021 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-32809979

RESUMEN

ABSTRACT: Basal cell carcinoma (BCC) is the most common malignancy of the skin. It is an epithelial neoplasm with origin in the precursor cells of the interfollicular epidermis. Even though it has low metastatic potential, delay in management may lead to local destruction and morbidity. In contrast, trichoepithelioma (TE) is a benign tumor originating from the outer root sheath of the hair follicle. Similar to BCC, TE tends to affect the head and neck region. Both neoplasms may exhibit clinical and histopathological similarities, making them prone to misdiagnosis. Multiple immunomarkers have been used to distinguish among these entities, but so far, no single agent or combination of agents appear to be neither sensitive nor specific enough to differentiate between them. This study was divided into 2 parts. First, 17 cases of BCC and 14 cases of TE were stained with androgen receptor and bcl-2. Then, 27 cases of borderline/equivocal of BCC and 13 cases of borderline/equivocal TE were stained with the same protocol. Sensitivity and specificity were calculated for each individual immunomarker and for the combination of them. Androgen receptor positivity was 100% specific for BCC and borderline/equivocal BCC, whereas bcl-2 diffuse staining pattern demonstrated a sensitivity of 82.4% for BCC and 88.9% borderline/equivocal BCC. When both immunomarkers were combined, the sensitivity for BCC decreased (70.6%) but the specificity remained high (100%). Similarly, the sensitivity for borderline/equivocal BCC was 55.6%, whereas the specificity was 100%. Although moderately sensitive, combining both immunomarkers showed an excellent specificity to discriminate between BCC and TE.


Asunto(s)
Carcinoma Basocelular/diagnóstico , Carcinoma Basocelular/metabolismo , Proteínas Proto-Oncogénicas c-bcl-2/metabolismo , Receptores Androgénicos/metabolismo , Neoplasias Cutáneas/diagnóstico , Neoplasias Cutáneas/metabolismo , Adulto , Anciano , Anciano de 80 o más Años , Biomarcadores de Tumor/metabolismo , Diagnóstico Diferencial , Femenino , Folículo Piloso , Humanos , Inmunohistoquímica , Masculino , Persona de Mediana Edad , Sensibilidad y Especificidad , Adulto Joven
18.
Am J Dermatopathol ; 43(4): 252-258, 2021 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-33201012

RESUMEN

BACKGROUND: Atypical intraepidermal melanocytic proliferation (AIMP) is a general term assigned to melanocytic proliferations of uncertain biological potential when a definitive histopathological diagnosis cannot be achieved. There are few data available describing the possibility of malignancy of AIMP, or ways to further define diagnosis. OBJECTIVE: To determine the rate of diagnostic change of AIMP to melanoma or melanoma in situ (MIS) after conventional excision. In addition, to determine the role of immunohistochemistry (IHC) in defining AIMP biopsies. METHODS: Retrospective cross-sectional, single-center review of biopsies with a diagnosis of AIMP with a follow-up conventional excision from 2012-2016 was performed. In a separate analysis, a search was performed for AIMP biopsied lesions in which IHC was subsequently performed. RESULTS: The rate of diagnostic change of AIMP to MIS was 4.8% (8/167) after excision. Punch biopsy was a risk factor for diagnostic change to MIS (odds ratio 12.94, confidence interval 2.56-65.38, P = 0.008). The rate of diagnostic change of AIMP biopsies after examining with IHC was 21.3% (34/160) to MIS and 4.4% (7/160) to melanoma. CONCLUSION: The possibility of malignancy of AIMP lesions must be taken into consideration when counseling patients and when planning treatment options. IHC is a useful tool and should be used in the evaluation of AIMP specimens.


Asunto(s)
Proliferación Celular , Melanocitos/patología , Melanoma/patología , Neoplasias Cutáneas/patología , Terminología como Asunto , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Biomarcadores de Tumor/análisis , Biopsia , Niño , Preescolar , Estudios Transversales , Femenino , Humanos , Inmunohistoquímica , Lactante , Recién Nacido , Masculino , Melanocitos/química , Melanoma/química , Melanoma/clasificación , Melanoma/cirugía , Persona de Mediana Edad , Valor Predictivo de las Pruebas , Estudios Retrospectivos , Neoplasias Cutáneas/química , Neoplasias Cutáneas/clasificación , Neoplasias Cutáneas/cirugía , Adulto Joven
19.
Rev Esp Enferm Dig ; 113(11): 796-797, 2021 11.
Artículo en Inglés | MEDLINE | ID: mdl-34154366

RESUMEN

In relation to the article "A case of mixed adenoneuroendocrine tumor of the colon", we would like to contribute a new case of this exceptional and biphasic clinical entity - the MANEC (mixed adenoneuroendocrine carcinoma). These tumors represent a mix of pathological components, are highly aggressive, and affect the gastrointestinal and pancreatobiliary tract. They are characterized by the dual presence of glandular and neuroendocrine epithelial elements, where each component represents at least 30 % of the tumor.


Asunto(s)
Adenocarcinoma , Carcinoma Neuroendocrino , Neoplasias Gastrointestinales , Adenocarcinoma/diagnóstico por imagen , Adenocarcinoma/cirugía , Carcinoma Neuroendocrino/diagnóstico por imagen , Carcinoma Neuroendocrino/cirugía , Colon , Humanos
20.
J Environ Sci (China) ; 101: 304-312, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33334525

RESUMEN

Chromium (Cr) is used in many manufacturing processes, and its release into natural waters is a major environmental problem today. Low concentrations of Cr(VI) are toxic to human health and living organisms due to the carcinogenic and mutagenic nature of this mineral. This work examined the conversion of Cr(VI) to Cr(III) via electrochemical reduction using gold electrode in an acidic sodium alginate (SA) solution and subsequent removal of the produced Cr(III)-SA by the polymer-enhanced ultrafiltration (PEUF) technique. A solution of SA in nitric acid was used both as an electrolytic medium during the voltammetric measurements and bulk electrolysis and as an extracting agent during the PEUF technique. The electroanalysis of Cr(VI) was performed by linear sweep voltammetry in the presence of acidic SA solution to study its voltammetric behavior as a function of the Cr(VI) concentration, pH, presence of Cr(III), SA concentration and scan rate. In addition, the quantitative reduction of Cr(VI) to Cr(III) was studied through the bulk electrolysis technique. The results showed efficient reduction with well-defined peaks at approximately 0.3 V vs. Ag/AgCl, using a gold working electrode. As the pH increased, the reduction signal strongly decreased until its disappearance. The optimum SA concentration was 10 mmol/L, and it was observed that the presence of Cr(III) did not interfere in the Cr(VI) electroanalysis. Through the quantitative reduction by bulk electrolysis in the presence of acidic SA solution, it was possible to reduce all Cr(VI) to Cr(III) followed by its removal via PEUF.


Asunto(s)
Contaminantes Químicos del Agua , Purificación del Agua , Adsorción , Alginatos , Cromo , Humanos , Concentración de Iones de Hidrógeno , Oxidación-Reducción
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