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1.
Environ Sci Technol ; 51(3): 1616-1625, 2017 02 07.
Artículo en Inglés | MEDLINE | ID: mdl-28027645

RESUMEN

Aminobacter sp. MSH1 immobilized in an alginate matrix in porous stones was tested in a pilot system as an alternative inoculation strategy to the use of free suspended cells for biological removal of micropollutant concentrations of 2,6-dichlorobenzamide (BAM) in drinking water treatment plants (DWTPs). BAM removal rates and MSH1 cell numbers were recorded during operation and assessed with specific BAM degradation rates obtained in lab conditions using either freshly grown cells or starved cells to explain reactor performance. Both reactors inoculated with either suspended or immobilized cells showed immediate BAM removal under the threshold of 0.1 µg/L, but the duration of sufficient BAM removal was 2-fold (44 days) longer for immobilized cells. The longer sufficient BAM removal in case of immobilized cells compared to suspended cells was mainly explained by a lower initial loss of MSH1 cells at operational start due to volume replacement and shear. Overall loss of activity in the reactors though was due to starvation, and final removal rates did not differ between reactors inoculated with immobilized and suspended cells. Management of assimilable organic carbon, in addition to cell immobilization, appears crucial for guaranteeing long-term BAM degradation activity of MSH1 in DWTP units.


Asunto(s)
Agua Potable , Phyllobacteriaceae/metabolismo , Dióxido de Silicio , Contaminación del Agua , Purificación del Agua
2.
Appl Microbiol Biotechnol ; 101(1): 411-421, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27734123

RESUMEN

Pesticide-polluted drinking water may be remediated by inoculating waterworks sand filters with specific degrading bacteria. However, degradation efficiency is often hampered by the poor adhesion behaviour of the introduced bacteria. The phenoxy acid herbicide 4-chloro-2-methyl-phenoxy-acetic acid (MCPA) is a widespread groundwater contaminant. The aim of this study was to investigate whether specific surface characteristics of MCPA-degrading bacteria could be linked to their degrading capabilities in sand filters. Four MCPA degraders with different taxonomic affiliations and original habitats (Sphingomonas sp. PM2, Sphingomonas sp. ERG5, Burkholderia sp. TFD34, Cupriavidus sp. TFD38) were characterised with regard to their motility, cell surface hydrophobicity, biofilm formation, adhesion behaviour and ability to mineralise MCPA. Strains PM2 and ERG5 were non-motile and hydrophobic, whilst strains TFD34 and TFD38 were motile and less hydrophobic. All the strains except ERG5 showed low biofilm formation on polystyrene, although it was significantly higher on glass. PM2 was the most efficient MCPA degrader as it displayed no lag phase and reached >50 % mineralisation at all concentrations (0.0016-25 mg L-1). PM2 adhered significantly better to sand than the other strains. No link was found between motility, biofilm formation and the ability to adhere to sand. PM2 completely removed MCPA for 14 days when inoculated in sand columns with a constant inlet of 1 mg L-1 MCPA. These results demonstrate that besides the ability to degrade the contaminant, surface hydrophobicity and adherence abilities are significant parameters controlling sustained degradation in flow-through sand columns and must be considered when selecting bacteria for bioaugmentation.


Asunto(s)
Ácido 2-Metil-4-clorofenoxiacético/metabolismo , Adhesión Bacteriana , Burkholderia/fisiología , Cupriavidus/fisiología , Plaguicidas/metabolismo , Sphingomonas/fisiología , Purificación del Agua/métodos , Biotransformación , Burkholderia/metabolismo , Cupriavidus/metabolismo , Filtración/métodos , Locomoción , Sphingomonas/metabolismo , Contaminantes Químicos del Agua/metabolismo
3.
Environ Sci Technol ; 50(18): 10123-33, 2016 09 20.
Artículo en Inglés | MEDLINE | ID: mdl-27537851

RESUMEN

Aminobacter sp. MSH1 uses the groundwater micropollutant 2,6-dichlorobenzamide (BAM) as a C and N source and is a potential catalyst for biotreatment of BAM-contaminated groundwater in filtration units of drinking water treatment plants (DWTPs). The oligotrophic environment of DWTPs including trace pollutant concentrations, and the high flow rates impose challenges for micropollutant biodegradation in DWTPs. To understand how trace BAM concentrations affect MSH1 surface colonization and BAM degrading activity, MSH1 was cultivated in flow channels fed continuously with BAM macro- and microconcentrations in a N- and C-limiting medium. At all BAM concentrations, MSH1 colonized the flow channel. BAM degradation efficiencies were concentration-dependent, ranging between 70 and 95%. Similarly, BAM concentration affected surface colonization, but at 100 µg/L BAM and lower, colonization was similar to that in systems without BAM, suggesting that assimilable organic carbon and nitrogen other than those supplied by BAM sustained colonization at BAM microconcentrations. Comparison of specific BAM degradation rates in flow channels and in cultures of suspended freshly grown cells indicated that starvation conditions in flow channels receiving BAM microconcentrations resulted into MSH1 biomasses with 10-100-times reduced BAM degrading activity and provided a kinetic model for predicting BAM degradation under continuous C and N starvation.


Asunto(s)
Agua Subterránea , Phyllobacteriaceae/metabolismo , Biodegradación Ambiental , Filtración , Purificación del Agua
4.
Environ Sci Technol ; 49(15): 8995-9003, 2015 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-26147883

RESUMEN

The herbicide fluazifop-P-butyl (FPB) is used against grasses in agricultural crops such as potato, oilseed rape, and sugar beet. Limited information is available in scientific literature on its environmental fate, therefore extensive monitoring at two agricultural test fields was combined with laboratory studies to determine leaching and the underlying degradation and sorption processes. Water samples from drains, suction cups, and groundwater wells showed leaching of the degradation products fluazifop-P (FP) and 2-hydroxy-5-trifluoromethyl-pyridin (TFMP) following FPB treatment. Laboratory experiments with soil from each field revealed a rapid degradation of FPB to FP. The degradation was almost exclusively microbial, and further biodegradation to TFMP occurred at a slower rate. Both degradation products were sorbed to the two soils to a small extent and were fairly persistent to degradation during the two-month incubation period. Together, the field and laboratory results from this study showed that the biodegradation of FPB in loamy soils gave rise to the production of two major degradation products that sorbed to a small extent. In this study, both degradation products leached to drainage and groundwater during precipitation. It is therefore recommended that these degradation products be included in programs monitoring water quality in areas with FPB use.


Asunto(s)
Agricultura , Herbicidas/análisis , Laboratorios , Piridinas/análisis , Contaminantes del Suelo/análisis , Suelo/química , Adsorción , Semivida , Concentración de Iones de Hidrógeno , Piridinas/química , Agua/química
5.
Environ Sci Technol ; 49(12): 7073-81, 2015 Jun 16.
Artículo en Inglés | MEDLINE | ID: mdl-26000605

RESUMEN

Biodegradation is one of the most favored and sustainable means of removing organic pollutants from contaminated aquifers but the major steering factors are still surprisingly poorly understood. Growing evidence questions some of the established concepts for control of biodegradation. Here, we critically discuss classical concepts such as the thermodynamic redox zonation, or the use of steady state transport scenarios for assessing biodegradation rates. Furthermore, we discuss if the absence of specific degrader populations can explain poor biodegradation. We propose updated perspectives on the controls of biodegradation in contaminant plumes. These include the plume fringe concept, transport limitations, and transient conditions as currently underestimated processes affecting biodegradation.


Asunto(s)
Bacterias/metabolismo , Agua Subterránea/microbiología , Contaminantes Químicos del Agua/análisis , Biodegradación Ambiental , Electrones , Oxidación-Reducción
6.
Environ Sci Technol ; 48(10): 5501-11, 2014 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-24708181

RESUMEN

Phenoxy acid herbicides are important groundwater contaminants. Stable isotope analysis and enantiomer analysis are well-recognized approaches for assessing in situ biodegradation in the field. In an aerobic degradation survey with six phenoxyacetic acid and three phenoxypropionic acid-degrading bacteria we measured (a) enantiomer-specific carbon isotope fractionation of MCPP ((R,S)-2-(4-chloro-2-methylphenoxy)-propionic acid), DCPP ((R,S)-2-(2,4-dichlorophenoxy)-propionic acid), and 4-CPP ((R,S)-2-(4-chlorophenoxy)-propionic acid); (b) compound-specific isotope fractionation of MCPA (4-chloro-2-methylphenoxyacetic acid) and 2,4-D (2,4-dichlorophenoxyacetic acid); and (c) enantiomer fractionation of MCPP, DCPP, and 4-CPP. Insignificant or very slight (ε = -1.3‰ to -2.0‰) carbon isotope fractionation was observed. Equally small values in an RdpA enzyme assay (εea = -1.0 ± 0.1‰) and even smaller fractionation in whole cell experiments of the host organism Sphingobium herbicidovorans MH (εwc = -0.3 ± 0.1‰) suggest that (i) enzyme-associated isotope effects were already small, yet (ii) further masked by active transport through the cell membrane. In contrast, enantiomer fractionation in MCPP, DCPP, and 4-CPP was pronounced, with enantioselectivities (ES) of -0.65 to -0.98 with Sphingomonas sp. PM2, -0.63 to -0.89 with Sphingobium herbicidovorans MH, and 0.74 to 0.97 with Delftia acidovorans MC1. To detect aerobic biodegradation of phenoxypropionic acids in the field, enantiomer fractionation seems, therefore, a stronger indicator than carbon isotope fractionation.


Asunto(s)
Bacterias/metabolismo , Fenoxiacetatos/aislamiento & purificación , Ácido 2,4-Diclorofenoxiacético/química , Ácido 2,4-Diclorofenoxiacético/aislamiento & purificación , Aerobiosis , Bacterias/enzimología , Biodegradación Ambiental , Isótopos de Carbono/análisis , Fraccionamiento Químico , Pruebas de Enzimas , Herbicidas/química , Herbicidas/aislamiento & purificación , Fenoxiacetatos/química , Estereoisomerismo
7.
Appl Microbiol Biotechnol ; 98(5): 2335-44, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24562459

RESUMEN

The Aminobacter sp. strain MSH1 has potential for pesticide bioremediation because it degrades the herbicide metabolite 2,6-dichlorobenzamide (BAM). Production of the BAM-degrading bacterium using aerobic bioreactor fermentation was investigated. A mineral salt medium limited for carbon and with an element composition similar to the strain was generated. The optimal pH and temperature for strain growth were determined using shaker flasks and verified in bioreactors. Glucose, fructose, and glycerol were suitable carbon sources for MSH1 (µ = 0.1 h(-1)); slower growth was observed on succinate and acetic acid (µ = 0.01 h(-1)). Standard conditions for growth of the MSH1 strain were defined at pH 7 and 25 °C, with glucose as the carbon source. In bioreactors (1 and 5 L), the specific growth rate of MSH1 increased from µ = 0.1 h(-1) on traditional mineral salt medium to µ = 0.18 h(-1) on the optimized mineral salt medium. The biomass yield under standard conditions was 0.47 g dry weight biomass/g glucose consumed. An investigation of the catabolic capacity of MSH1 cells harvested in exponential and stationary growth phases showed a degradation activity per cell of about 3 × 10(-9) µg BAM h(-1). Thus, fast, efficient, large-scale production of herbicide-degrading Aminobacter was possible, bringing the use of this bacterium in bioaugmentation field remediation closer to reality.


Asunto(s)
Reactores Biológicos/microbiología , Phyllobacteriaceae/crecimiento & desarrollo , Benzamidas/metabolismo , Biomasa , Biotransformación , Carbono/metabolismo , Medios de Cultivo/química , Contaminantes Ambientales/metabolismo , Herbicidas/metabolismo , Concentración de Iones de Hidrógeno , Phyllobacteriaceae/metabolismo , Temperatura
8.
Appl Environ Microbiol ; 79(24): 7846-56, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24123738

RESUMEN

The environmental fate of phenylurea herbicides has received considerable attention in recent decades. The microbial metabolism of N,N-dimethyl-substituted phenylurea herbicides can generally be initiated by mono-N-demethylation. In this study, the molecular basis for this process was revealed. The pdmAB genes in Sphingobium sp. strain YBL2 were shown to be responsible for the initial mono-N-demethylation of commonly used N,N-dimethyl-substituted phenylurea herbicides. PdmAB is the oxygenase component of a bacterial Rieske non-heme iron oxygenase (RO) system. The genes pdmAB, encoding the α subunit PdmA and the ß subunit PdmB, are organized in a transposable element flanked by two direct repeats of an insertion element resembling ISRh1. Furthermore, this transposable element is highly conserved among phenylurea herbicide-degrading sphingomonads originating from different areas of the world. However, there was no evidence of a gene for an electron carrier (a ferredoxin or a reductase) located in the immediate vicinity of pdmAB. Without its cognate electron transport components, expression of PdmAB in Escherichia coli, Pseudomonas putida, and other sphingomonads resulted in a functional enzyme. Moreover, coexpression of a putative [3Fe-4S]-type ferredoxin from Sphingomonas sp. strain RW1 greatly enhanced the catalytic activity of PdmAB in E. coli. These data suggested that PdmAB has a low specificity for electron transport components and that its optimal ferredoxin may be the [3Fe-4S] type. PdmA exhibited low homology to the α subunits of previously characterized ROs (less than 37% identity) and did not cluster with the RO group involved in O- or N-demethylation reactions, indicating that PdmAB is a distinct bacterial RO N-demethylase.


Asunto(s)
Herbicidas/metabolismo , Oxidorreductasas N-Desmetilantes/metabolismo , Compuestos de Fenilurea/metabolismo , Sphingomonadaceae/enzimología , Biotransformación , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , Transporte de Electrón , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Datos de Secuencia Molecular , Oxidorreductasas N-Desmetilantes/genética , Filogenia , Pseudomonas putida/genética , Pseudomonas putida/metabolismo , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Sphingomonadaceae/genética
9.
Appl Environ Microbiol ; 79(1): 367-75, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23124226

RESUMEN

Two 4-chloro-2-methylphenoxyacetic acid (MCPA)-degrading enrichment cultures selected from an aquifer on low (0.1 mg liter(-1)) or high (25 mg liter(-1)) MCPA concentrations were compared in terms of metabolic activity, community composition, population growth, and single cell physiology. Different community compositions and major shifts in community structure following exposure to different MCPA concentrations were observed using both 16S rRNA gene denaturing gradient gel electrophoresis fingerprinting and pyrosequencing. The communities also differed in their MCPA-mineralizing activities. The enrichments selected on low concentrations mineralized MCPA with shorter lag phases than those selected on high concentrations. Flow cytometry measurements revealed that mineralization led to cell growth. The presence of low-nucleic acid-content bacteria (LNA bacteria) was correlated with mineralization activity in cultures selected on low herbicide concentrations. This suggests that LNA bacteria may play a role in degradation of low herbicide concentrations in aquifers impacted by agriculture. This study shows that subpopulations of herbicide-degrading bacteria that are adapted to different pesticide concentrations can coexist in the same environment and that using a low herbicide concentration enables enrichment of apparently oligotrophic subpopulations.


Asunto(s)
Ácido 2-Metil-4-clorofenoxiacético/metabolismo , Bacterias/clasificación , Bacterias/metabolismo , Biota , Agua Subterránea/microbiología , Herbicidas/metabolismo , Bacterias/genética , Bacterias/crecimiento & desarrollo , Electroforesis en Gel de Gradiente Desnaturalizante , Citometría de Flujo , ARN Ribosómico 16S/genética
10.
Appl Environ Microbiol ; 78(15): 5070-6, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22582066

RESUMEN

The Greenland ice sheet (GrIS) receives organic carbon (OC) of anthropogenic origin, including pesticides, from the atmosphere and/or local sources, and the fate of these compounds in the ice is currently unknown. The ability of supraglacial heterotrophic microbes to mineralize different types of OC is likely a significant factor determining the fate of anthropogenic OC on the ice sheet. Here we determine the potential of the microbial community from the surface of the GrIS to mineralize the widely used herbicide 2,4-dichlorophenoxyacetic acid (2,4-D). Surface ice cores were collected and incubated for up to 529 days in microcosms simulating in situ conditions. Mineralization of side chain- and ring-labeled [(14)C]2,4-D was measured in the samples, and quantitative PCR targeting the tfdA genes in total DNA extracted from the ice after the experiment was performed. We show that the supraglacial microbial community on the GrIS contains microbes that are capable of degrading 2,4-D and that they are likely present in very low numbers. They can mineralize 2,4-D at a rate of up to 1 nmol per m(2) per day, equivalent to ∼26 ng C m(-2) day(-1). Thus, the GrIS should not be considered a mere reservoir of all atmospheric contaminants, as it is likely that some deposited compounds will be removed from the system via biodegradation processes before their potential release due to the accelerated melting of the ice sheet.


Asunto(s)
Ácido 2,4-Diclorofenoxiacético/metabolismo , Bacterias/metabolismo , Microbiología Ambiental , Contaminantes Ambientales/metabolismo , Herbicidas/metabolismo , Cubierta de Hielo/microbiología , Filogenia , Bacterias/genética , Secuencia de Bases , Biodegradación Ambiental , Clonación Molecular , Cartilla de ADN/genética , Groenlandia , Cinética , Funciones de Verosimilitud , Oxigenasas de Función Mixta/genética , Oxigenasas de Función Mixta/metabolismo , Modelos Genéticos , Datos de Secuencia Molecular , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
11.
Environ Sci Technol ; 46(3): 1447-54, 2012 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-22191999

RESUMEN

2,6-Dichlorobenzamide (BAM) is a metabolite of the herbicide 2,6-dichlorobenzonitrile (dichlobenil), and a prominent groundwater contaminant. Observable compound-specific isotope fractionation during BAM formation-through transformation of dichlobenil by Rhodococcus erythropolis DSM 9685-was small. In contrast, isotope fractionation during BAM degradation-with Aminobacter sp. MSH1 and ASI1, the only known bacterial strains capable of mineralizing BAM-was large, with pronounced carbon (ε(C) = -7.5‰ to -7.8‰) and nitrogen (ε(N) = -10.7‰ to -13.5‰) isotopic enrichment factors. BAM isotope values in natural samples are therefore expected to be dominated by the effects of its degradation rather than formation. Dual isotope slopes Δ (=Δδ(15)N/Δδ(13)C ≈ ε(N)/ε(C)) showed only small differences for MSH1 (1.75 ± 0.03) and ASI1 (1.45 ± 0.03) suggesting similar transformation mechanisms of BAM hydrolysis. Observations are in agreement with either a tetrahedral intermediate promoted by OH(-) or H(3)O(+) catalysis, or a concerted reaction mechanism. Therefore, owing to consistent carbon isotopic fractionation, isotope shifts of BAM can be linked to BAM biodegradation, and may even be used to quantify degradation of this persistent metabolite. In contrast, nitrogen isotope values may be rather indicative of different sources. Our results delineate a new approach to assessing the fate of BAM in the environment.


Asunto(s)
Benzamidas/metabolismo , Monitoreo del Ambiente/métodos , Agua Subterránea/química , Residuos de Plaguicidas/metabolismo , Phyllobacteriaceae/metabolismo , Contaminantes Químicos del Agua/análisis , Benzamidas/química , Biodegradación Ambiental , Isótopos de Carbono/metabolismo , Fraccionamiento Químico , Cromatografía de Gases , Cromatografía Líquida de Alta Presión , Espectrometría de Masas , Estructura Molecular , Isótopos de Nitrógeno/metabolismo , Compuestos Onio/metabolismo , Residuos de Plaguicidas/química
12.
Appl Microbiol Biotechnol ; 94(1): 237-45, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-21983704

RESUMEN

Degradation and mineralisation of the groundwater contaminant 2,6-dichloro-benzamide (BAM) was investigated in two Aminobacter strains focussing on the induction of BAM degradation and mineralisation and occurrence of intermediate metabolites. The BAM degradation rate was independent of whether the cells were pre-grown in the absence or presence of BAM, thus indicating that the first step in the degradation pathway was constitutively expressed. In contrast, (14)CO(2) production was stimulated when cells were pre-grown in the presence of BAM, suggesting that one or more of the subsequent steps in the degradation pathway were inducible. Accumulation of 2,6-dichlorobenzoate (DCBA) during degradation of BAM demonstrated that the first step involved amidase activity. Mass balance calculations and thin-layer chromatography coupled with autoradiographic detection indicated that degradation of DCBA and at least one unknown metabolite may comprise a bottleneck for BAM mineralisation by Aminobacter spp. The study thus provides novel information about the BAM degradation pathway and points to the involvement of unknown intermediate metabolites in degradation of this important groundwater contaminant.


Asunto(s)
Alphaproteobacteria/metabolismo , Benzamidas/metabolismo , Herbicidas/metabolismo , Contaminantes Químicos del Agua/metabolismo , Alphaproteobacteria/enzimología , Amidohidrolasas/metabolismo , Proteínas Bacterianas/metabolismo , Biodegradación Ambiental , Agua Subterránea/química
13.
Appl Environ Microbiol ; 77(24): 8754-64, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22003008

RESUMEN

The soil bacterial isolate Variovorax sp. strain SRS16 mineralizes the phenylurea herbicide linuron. The proposed pathway initiates with hydrolysis of linuron to 3,4-dichloroaniline (DCA) and N,O-dimethylhydroxylamine, followed by conversion of DCA to Krebs cycle intermediates. Differential proteomic analysis showed a linuron-dependent upregulation of several enzymes that fit into this pathway, including an amidase (LibA), a multicomponent chloroaniline dioxygenase, and enzymes associated with a modified chlorocatechol ortho-cleavage pathway. Purified LibA is a monomeric linuron hydrolase of ∼55 kDa with a K(m) and a V(max) for linuron of 5.8 µM and 0.16 nmol min⁻¹, respectively. This novel member of the amidase signature family is unrelated to phenylurea-hydrolyzing enzymes from Gram-positive bacteria and lacks activity toward other tested phenylurea herbicides. Orthologues of libA are present in all other tested linuron-degrading Variovorax strains with the exception of Variovorax strains WDL1 and PBS-H4, suggesting divergent evolution of the linuron catabolic pathway in different Variovorax strains. The organization of the linuron degradation genes identified in the draft SRS16 genome sequence indicates that gene patchwork assembly is at the origin of the pathway. Transcription analysis suggests that a catabolic intermediate, rather than linuron itself, acts as effector in activation of the pathway. Our study provides the first report on the genetic organization of a bacterial pathway for complete mineralization of a phenylurea herbicide and the first report on a linuron hydrolase in Gram-negative bacteria.


Asunto(s)
Comamonadaceae/enzimología , Herbicidas/metabolismo , Hidrolasas/aislamiento & purificación , Hidrolasas/metabolismo , Compuestos de Fenilurea/metabolismo , Comamonadaceae/química , Comamonadaceae/genética , Genómica/métodos , Hidrolasas/química , Hidrolasas/genética , Cinética , Redes y Vías Metabólicas/genética , Peso Molecular , Proteómica/métodos
14.
Environ Sci Technol ; 44(19): 7622-7, 2010 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-20812719

RESUMEN

Soil augmentation with microbial degraders immobilized on carriers is evaluated as a potential remediation technology using a mathematical model that includes degradation within spatially distributed carriers and diffusion or advection-dispersion as contaminant mass transfer mechanisms. The total volume of carriers is a critical parameter affecting biodegradation performance. In the absence of advection, 320 and 20 000 days are required to mineralize 90% of the herbicide linuron by Variovorax sp. SRS16 encapsulated in 2 mm beads with 5 and 20 mm spacings, respectively. Given that many pesticide degraders have low intrinsic degradation rates and that only limited carrier to soil volume ratios are practically feasible, bioaugmented soils are characterized by low effective degradation rates and can be considered fully mixed. A simple exponential model is then sufficient to predict biodegradation as verified by comparisons with published experimental data. By contrast, the full spatially distributed model is needed to adequately model the degradation of faster degrading contaminants such as naphthalene and benzene which can be mass-transfer limited. Dimensionless Damköhler numbers are proposed to determine whether the spatially distributed model is required. Results show that field scale applications of immobilized degraders will be limited by the amount of carriers required to reach acceptable degradation rates.


Asunto(s)
Biodegradación Ambiental , Restauración y Remediación Ambiental/métodos , Herbicidas/metabolismo , Linurona/metabolismo , Contaminantes del Suelo/metabolismo
15.
Appl Environ Microbiol ; 74(8): 2332-40, 2008 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-18296530

RESUMEN

The phenylurea herbicide diuron [N-(3,4-dichlorophenyl)-N,N-dimethylurea] is widely used in a broad range of herbicide formulations, and consequently, it is frequently detected as a major water contaminant in areas where there is extensive use. We constructed a linuron [N-(3,4-dichlorophenyl)-N-methoxy-N-methylurea]- and diuron-mineralizing two-member consortium by combining the cooperative degradation capacities of the diuron-degrading organism Arthrobacter globiformis strain D47 and the linuron-mineralizing organism Variovorax sp. strain SRS16. Neither of the strains mineralized diuron alone in a mineral medium, but combined, the two strains mineralized 31 to 62% of the added [ring-U-(14)C]diuron to (14)CO(2), depending on the initial diuron concentration and the cultivation conditions. The constructed consortium was used to initiate the degradation and mineralization of diuron in soil without natural attenuation potential. This approach led to the unexpected finding that Variovorax sp. strain SRS16 was able to mineralize diuron in a pure culture when it was supplemented with appropriate growth substrates, making this strain the first known bacterium capable of mineralizing diuron and representatives of both the N,N-dimethyl- and N-methoxy-N-methyl-substituted phenylurea herbicides. The ability of the coculture to mineralize microgram-per-liter levels of diuron was compared to the ability of strain SRS16 alone, which revealed the greater extent of mineralization by the two-member consortium (31 to 33% of the added [ring-U-(14)C]diuron was mineralized to (14)CO(2) when 15.5 to 38.9 mug liter(-1) diuron was used). These results suggest that the consortium consisting of strains SRS16 and D47 could be a promising candidate for remediation of soil and water contaminated with diuron and linuron and their shared metabolite 3,4-dichloroaniline.


Asunto(s)
Arthrobacter/metabolismo , Comamonadaceae/metabolismo , Diurona/metabolismo , Dióxido de Carbono/metabolismo , Radioisótopos de Carbono/metabolismo , Medios de Cultivo/química , Herbicidas/metabolismo , Linurona/metabolismo , Redes y Vías Metabólicas , Microbiología del Suelo
16.
Environ Pollut ; 154(2): 155-68, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-17988770

RESUMEN

The benzonitriles dichlobenil, bromoxynil and ioxynil are important broad-spectrum or selective herbicides used in agriculture, orchards and public areas worldwide. The dichlobenil metabolite 2,6-dichlorobenzamide is the most frequently encountered groundwater contaminant in Denmark, which suggests that the environmental fate of these three structurally related benzonitrile herbicides should be addressed in detail. This review summarises the current knowledge on microbial degradation of dichlobenil, bromoxynil and ioxynil with particular focus on common features of degradation rates and pathways, accumulation of persistent metabolites and diversity of the involved degrader organisms.


Asunto(s)
Bacterias/metabolismo , Herbicidas/metabolismo , Nitrilos/metabolismo , Microbiología del Suelo , Contaminantes del Suelo/metabolismo , Benzamidas/análisis , Biodegradación Ambiental , Dinamarca , Yodobencenos/metabolismo , Contaminantes Químicos del Agua/análisis , Abastecimiento de Agua
17.
Water Res ; 129: 1-10, 2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29127829

RESUMEN

Ammonium oxidation to nitrite and then to nitrate (nitrification) is a key process in many waterworks treating groundwater to make it potable. In rapid sand filters, nitrifying microbial communities may evolve naturally from groundwater bacteria entering the filters. However, in new filters this may take several months, and in some cases the nitrification process is never sufficiently rapid to be efficient or is only performed partially, with nitrite as an undesired end product. The present study reports the first successful priming of nitrification in a rapid sand filter treating groundwater. It is shown that nitrifying communities could be enriched by microbiomes from well-functioning rapid sand filters in waterworks and that the enriched nitrifying consortium could be used to inoculate fresh filters, significantly shortening the time taken for the nitrification process to start. The key nitrifiers in the enrichment were different from those in the well-functioning filter, but similar to those that initiated the nitrification process in fresh filters without inoculation. Whether or not the nitrification was primed with the enriched nitrifying consortium, the bacteria performing the nitrification process during start-up appeared to be slowly outcompeted by Nitrospira, the dominant nitrifying bacterium in well-functioning rapid sand filters.


Asunto(s)
Filtración/métodos , Agua Subterránea , Microbiota , Nitrificación , Purificación del Agua/métodos , Compuestos de Amonio , Bacterias , Agua Potable , Nitratos , Nitritos , Oxidación-Reducción , Dióxido de Silicio
18.
FEMS Microbiol Lett ; 268(2): 254-60, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17328751

RESUMEN

A screening of 27 fungal strains for degradation of the phenylurea herbicide isoproturon was performed and yielded 15 strains capable of converting the herbicide to polar metabolites. The zygomycete fungus Cunninghamella elegans strain JS/2 isolated from an agricultural soil converted isoproturon to several known hydroxylated metabolites. In addition, unknown metabolites were produced in minor amounts. Inducible degradation was indicated by comparing resting cells pregrown with or without isoproturon. This shows that strain JS/2 is capable of partially degrading isoproturon and that one or more of the enzymes involved are inducible upon isoproturon exposure.


Asunto(s)
Cunninghamella/metabolismo , Compuestos de Fenilurea/metabolismo , Adaptación Fisiológica , Hidroxilación , Microbiología del Suelo
19.
Environ Pollut ; 148(1): 83-93, 2007 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-17254678

RESUMEN

The impact of the herbicide concentration (0.10-10,000 microg kg(-1)) and addition of organic and inorganic nutrients on mecoprop, 2,4-D and 2,4,5-T mineralization in aquifer and soil samples was studied in laboratory experiments. Generally, 2,4-D was most rapidly mineralized followed by mecoprop and 2,4,5-T. A shift from non-growth to growth-linked mineralization kinetics was observed in aquifer sediment with 2,4-D concentrations >0.10 microg kg(-1) and mecoprop concentrations >10.0 microg kg(-1). The shift was apparent at higher herbicide concentrations in soil coinciding with a lower bioavailable fraction and a higher herbicide sorption to soil. Herbicide addition did not affect the bacterial density, although 2,4-D and mecoprop applied at 10,000 microg kg(-1) stimulated growth of specific degraders. Generally, nutrient amendments did not stimulate mineralization at the lowest herbicide concentrations. In contrast, the mineralization rate of higher herbicide concentrations was significantly stimulated by the amendment of inorganic nutrients.


Asunto(s)
Ácido 2,4,5-Triclorofenoxiacético , Ácido 2,4-Diclorofenoxiacético , Ácido 2-Metil-4-clorofenoxiacético/análogos & derivados , Restauración y Remediación Ambiental/métodos , Herbicidas , Contaminantes del Suelo , Contaminantes Químicos del Agua , Adsorción , Bacterias/metabolismo , Biodegradación Ambiental/efectos de los fármacos , Sustancias Húmicas
20.
Environ Pollut ; 222: 404-411, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28065570

RESUMEN

Bromide is a conservative tracer that is often applied with non-conservative solutes such as pesticides to estimate their retardation in the soil. It has been applied in concentrations of up to 250 g Br L-1, levels at which the growth of single-celled organisms can be inhibited. Bromide applications may therefore affect the biodegradation of non-conservative solutes in soil. The present study investigated the effect of potassium bromide (KBr) on the mineralisation of three pesticides - glyphosate, MCPA and metribuzin - in four agricultural A-horizon soils. KBr was added to soil microcosms at concentrations of 0, 0.5, 2.5 and 5 g Br- L-1 in the soil solution. The study concluded that KBr had a negative effect on pesticide mineralisation. The inhibitory effect varied depending on the KBr concentration, the type of pesticide and the type of soil. Furthermore, 16 S amplicon sequencing revealed that the KBr treatment generally reduced the abundance of bacteroidetes and proteobacteria on both an RNA and DNA level. Therefore, in order to reduce the effect of KBr on the soil bacterial community and consequently also on xenobiotic degradation, it is recommended that KBr be applied in a concentration that does not exceed 0.5 g Br- L-1 in the soil water.


Asunto(s)
Biodegradación Ambiental/efectos de los fármacos , Bromuros/farmacología , Plaguicidas/metabolismo , Compuestos de Potasio/farmacología , Microbiología del Suelo , Contaminantes del Suelo/metabolismo , Suelo/química , Ácido 2-Metil-4-clorofenoxiacético/metabolismo , Glicina/análogos & derivados , Glicina/metabolismo , Triazinas/metabolismo , Glifosato
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