Búsqueda | Biblioteca Virtual en Salud Odontología. Uruguay

1.

GENCODE: reference annotation for the human and mouse genomes in 2023.

Frankish, Adam; Carbonell-Sala, Sílvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdán-Vélez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; Dursun, Cagatay; Fatima, Reham; Giorgetti, Stefano; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Hardy, Matthew; Harrison, Peter W; Hourlier, Thibaut; Hollis, Zoe; Hunt, Toby; James, Benjamin; Jiang, Yunzhe; Johnson, Rory; Kay, Mike; Lagarde, Julien; Martin, Fergal J; Gómez, Laura Martínez; Nair, Surag; Ni, Pengyu; Pozo, Fernando; Ramalingam, Vivek; Ruffier, Magali; Schmitt, Bianca M; Schreiber, Jacob M; Steed, Emily; Suner, Marie-Marthe; Sumathipala, Dulika; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wass, Elizabeth.

Nucleic Acids Res ; 51(D1): D942-D949, 2023 01 06.

Artículo en Inglés | MEDLINE | ID: mdl-36420896

2.

Non-redundant functions of H2A.Z.1 and H2A.Z.2 in chromosome segregation and cell cycle progression.

Sales-Gil, Raquel; Kommer, Dorothee C; de Castro, Ines J; Amin, Hasnat A; Vinciotti, Veronica; Sisu, Cristina; Vagnarelli, Paola.

EMBO Rep ; 22(11): e52061, 2021 11 04.

Artículo en Inglés | MEDLINE | ID: mdl-34423893

3.

GENCODE 2021.

Frankish, Adam; Diekhans, Mark; Jungreis, Irwin; Lagarde, Julien; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Carbonell Sala, Silvia; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; Gonzalez, Jose Manuel; Grego, Tiago; Hardy, Matthew; Hourlier, Thibaut; Howe, Kevin L; Hunt, Toby; Izuogu, Osagie G; Johnson, Rory; Martin, Fergal J; Martínez, Laura; Mohanan, Shamika; Muir, Paul; Navarro, Fabio C P; Parker, Anne; Pei, Baikang; Pozo, Fernando; Riera, Ferriol Calvet; Ruffier, Magali; Schmitt, Bianca M; Stapleton, Eloise; Suner, Marie-Marthe; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wolf, Maxim Y; Xu, Jinuri; Yang, Yucheng T; Yates, Andrew; Zerbino, Daniel; Zhang, Yan; Choudhary, Jyoti S; Gerstein, Mark.

Nucleic Acids Res ; 49(D1): D916-D923, 2021 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-33270111

4.

Impact of Environmentally Relevant Concentrations of Bisphenol A (BPA) on the Gene Expression Profile in an In Vitro Model of the Normal Human Ovary.

Zahra, Aeman; Kerslake, Rachel; Kyrou, Ioannis; Randeva, Harpal S; Sisu, Cristina; Karteris, Emmanouil.

Int J Mol Sci ; 23(10)2022 May 10.

Artículo en Inglés | MEDLINE | ID: mdl-35628146

5.

In Silico Study to Predict the Structural and Functional Consequences of SNPs on Biomarkers of Ovarian Cancer (OC) and BPA Exposure-Associated OC.

Zahra, Aeman; Hall, Marcia; Chatterjee, Jayanta; Sisu, Cristina; Karteris, Emmanouil.

Int J Mol Sci ; 23(3)2022 Feb 02.

Artículo en Inglés | MEDLINE | ID: mdl-35163645

6.

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

Thybert, David; Roller, Masa; Navarro, Fábio C P; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Václav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C; Laukaitis, Christina M; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M; Odom, Duncan T; Flicek, Paul.

Genome Res ; 28(4): 448-459, 2018 04.

Artículo en Inglés | MEDLINE | ID: mdl-29563166

7.

GENCODE reference annotation for the human and mouse genomes.

Frankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Carbonell Sala, Silvia; Chrast, Jacqueline; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; Gonzalez, Jose Manuel; Grego, Tiago; Hardy, Matthew; Hourlier, Thibaut; Hunt, Toby; Izuogu, Osagie G; Lagarde, Julien; Martin, Fergal J; Martínez, Laura; Mohanan, Shamika; Muir, Paul; Navarro, Fabio C P; Parker, Anne; Pei, Baikang; Pozo, Fernando; Ruffier, Magali; Schmitt, Bianca M; Stapleton, Eloise; Suner, Marie-Marthe; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Xu, Jinuri; Yates, Andrew; Zerbino, Daniel; Zhang, Yan; Aken, Bronwen; Choudhary, Jyoti S; Gerstein, Mark; Guigó, Roderic; Hubbard, Tim J P.

Nucleic Acids Res ; 47(D1): D766-D773, 2019 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-30357393

8.

Comparative analysis of the transcriptome across distant species.

Gerstein, Mark B; Rozowsky, Joel; Yan, Koon-Kiu; Wang, Daifeng; Cheng, Chao; Brown, James B; Davis, Carrie A; Hillier, LaDeana; Sisu, Cristina; Li, Jingyi Jessica; Pei, Baikang; Harmanci, Arif O; Duff, Michael O; Djebali, Sarah; Alexander, Roger P; Alver, Burak H; Auerbach, Raymond; Bell, Kimberly; Bickel, Peter J; Boeck, Max E; Boley, Nathan P; Booth, Benjamin W; Cherbas, Lucy; Cherbas, Peter; Di, Chao; Dobin, Alex; Drenkow, Jorg; Ewing, Brent; Fang, Gang; Fastuca, Megan; Feingold, Elise A; Frankish, Adam; Gao, Guanjun; Good, Peter J; Guigó, Roderic; Hammonds, Ann; Harrow, Jen; Hoskins, Roger A; Howald, Cédric; Hu, Long; Huang, Haiyan; Hubbard, Tim J P; Huynh, Chau; Jha, Sonali; Kasper, Dionna; Kato, Masaomi; Kaufman, Thomas C; Kitchen, Robert R; Ladewig, Erik; Lagarde, Julien.

Nature ; 512(7515): 445-8, 2014 Aug 28.

Artículo en Inglés | MEDLINE | ID: mdl-25164755

9.

Comparative analysis of pseudogenes across three phyla.

Sisu, Cristina; Pei, Baikang; Leng, Jing; Frankish, Adam; Zhang, Yan; Balasubramanian, Suganthi; Harte, Rachel; Wang, Daifeng; Rutenberg-Schoenberg, Michael; Clark, Wyatt; Diekhans, Mark; Rozowsky, Joel; Hubbard, Tim; Harrow, Jennifer; Gerstein, Mark B.

Proc Natl Acad Sci U S A ; 111(37): 13361-6, 2014 Sep 16.

Artículo en Inglés | MEDLINE | ID: mdl-25157146

10.

Loregic: a method to characterize the cooperative logic of regulatory factors.

Wang, Daifeng; Yan, Koon-Kiu; Sisu, Cristina; Cheng, Chao; Rozowsky, Joel; Meyerson, William; Gerstein, Mark B.

PLoS Comput Biol ; 11(4): e1004132, 2015 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-25884877

11.

Effect of MYC and PARP Inhibitors in Ovarian Cancer Using an In Vitro Model.

Morea, Alessandro; Saravi, Sayeh; Sisu, Cristina; Hall, Marcia; Tosi, Sabrina; Karteris, Emmanouil; Storlazzi, Clelia Tiziana.

Anticancer Res ; 44(5): 1817-1827, 2024 May.

Artículo en Inglés | MEDLINE | ID: mdl-38677725

12.

Transcriptional Landscape of 3D vs. 2D Ovarian Cancer Cell Models.

Kerslake, Rachel; Belay, Birhanu; Panfilov, Suzana; Hall, Marcia; Kyrou, Ioannis; Randeva, Harpal S; Hyttinen, Jari; Karteris, Emmanouil; Sisu, Cristina.

Cancers (Basel) ; 15(13)2023 Jun 26.

Artículo en Inglés | MEDLINE | ID: mdl-37444459

13.

Pan-Cancer Analysis Identifies MNX1 and Associated Antisense Transcripts as Biomarkers for Cancer.

Ragusa, Denise; Tosi, Sabrina; Sisu, Cristina.

Cells ; 11(22)2022 11 11.

Artículo en Inglés | MEDLINE | ID: mdl-36429006

14.

Engineered model of t(7;12)(q36;p13) AML recapitulates patient-specific features and gene expression profiles.

Ragusa, Denise; Cicirò, Ylenia; Federico, Concetta; Saccone, Salvatore; Bruno, Francesca; Saeedi, Reza; Sisu, Cristina; Pina, Cristina; Sala, Arturo; Tosi, Sabrina.

Oncogenesis ; 11(1): 50, 2022 Sep 03.

Artículo en Inglés | MEDLINE | ID: mdl-36057683

15.

Differential Regulation of Genes by the Glucogenic Hormone Asprosin in Ovarian Cancer.

Kerslake, Rachel; Sisu, Cristina; Panfilov, Suzana; Hall, Marcia; Khan, Nabeel; Jeyaneethi, Jeyarooban; Randeva, Harpal; Kyrou, Ioannis; Karteris, Emmanouil.

J Clin Med ; 11(19)2022 Oct 08.

Artículo en Inglés | MEDLINE | ID: mdl-36233808

16.

Differential Expression of RAD51AP1 in Ovarian Cancer: Effects of siRNA In Vitro.

Filipe, Alice; Katopodis, Periklis; Chudasama, Dimple; Kerslake, Rachel; Jeyaneethi, Jeyarooban; Anikin, Vladimir; Silva, Elisabete; Kyrou, Ioannis; Randeva, Harpal S; Sisu, Cristina; Hall, Marcia; Karteris, Emmanouil.

J Pers Med ; 12(2)2022 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-35207688

17.

GENCODE Pseudogenes.

Sisu, Cristina.

Methods Mol Biol ; 2324: 67-82, 2021.

Artículo en Inglés | MEDLINE | ID: mdl-34165709

18.

Pseudogenes as Biomarkers and Therapeutic Targets in Human Cancers.

Sisu, Cristina.

Methods Mol Biol ; 2324: 319-337, 2021.

Artículo en Inglés | MEDLINE | ID: mdl-34165724

19.

Identification of Potential Bisphenol A (BPA) Exposure Biomarkers in Ovarian Cancer.

Zahra, Aeman; Dong, Qiduo; Hall, Marcia; Jeyaneethi, Jeyarooban; Silva, Elisabete; Karteris, Emmanouil; Sisu, Cristina.

J Clin Med ; 10(9)2021 May 05.

Artículo en Inglés | MEDLINE | ID: mdl-34062972

20.

In Silico and In Vitro Analysis of lncRNA XIST Reveals a Panel of Possible Lung Cancer Regulators and a Five-Gene Diagnostic Signature.

Katopodis, Periklis; Dong, Qiduo; Halai, Heerni; Fratila, Cristian I; Polychronis, Andreas; Anikin, Vladimir; Sisu, Cristina; Karteris, Emmanouil.

Cancers (Basel) ; 12(12)2020 Nov 24.

Artículo en Inglés | MEDLINE | ID: mdl-33255394

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