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1.
J Exp Bot ; 75(5): 1331-1346, 2024 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-37996075

RESUMEN

This study describes the seasonal changes in cell-to-cell transport in three selected angiosperm tree species, Acer pseudoplatanus (maple), Fraxinus excelsior (ash), and Populus tremula × tremuloides (poplar), with an emphasis on the living wood component, xylem parenchyma cells (XPCs). We performed anatomical studies, dye loading through the vascular system, measurements of non-structural carbohydrate content, immunocytochemistry, inhibitory assays and quantitative real-time PCR to analyse the transport mechanisms and seasonal variations in wood. The abundance of membrane dye in wood varied seasonally along with seasonally changing tree phenology, cambial activity, and non-structural carbohydrate content. Moreover, dyes internalized in vessel-associated cells and 'trapped' in the endomembrane system are transported farther between other XPCs via plasmodesmata. Finally, various transport mechanisms based on clathrin-mediated and clathrin-independent endocytosis, and membrane transporters, operate in wood, and their involvement is species and/or season dependent. Our study highlights the importance of XPCs in seasonally changing cell-to-cell transport in both ring-porous (ash) and diffuse-porous (maple, poplar) tree species, and demonstrates the involvement of both endocytosis and plasmodesmata in intercellular communication in angiosperm wood.


Asunto(s)
Magnoliopsida , Populus , Madera , Estaciones del Año , Xilema , Clatrina , Carbohidratos
2.
New Phytol ; 228(5): 1559-1572, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-32648607

RESUMEN

Wood, or secondary xylem, is the product of xylogenesis, a developmental process that begins with the proliferation of cambial derivatives and ends with mature xylem fibers and vessels with lignified secondary cell walls. Fully mature xylem has undergone a series of cellular processes, including cell division, cell expansion, secondary wall formation, lignification and programmed cell death. A complex network of interactions between transcriptional regulators and signal transduction pathways controls wood formation. However, the role of metabolites during this developmental process has not been comprehensively characterized. To evaluate the role of metabolites during wood formation, we performed a high spatial resolution metabolomics study of the wood-forming zone of Populus tremula, including laser dissected aspen ray and fiber cells. We show that metabolites show specific patterns within the wood-forming zone, following the differentiation process from cell division to cell death. The data from profiled laser dissected aspen ray and fiber cells suggests that these two cell types host distinctly different metabolic processes. Furthermore, by integrating previously published transcriptomic and proteomic profiles generated from the same trees, we provide an integrative picture of molecular processes, for example, deamination of phenylalanine during lignification is of critical importance for nitrogen metabolism during wood formation.


Asunto(s)
Populus , Proteómica , Madera , Cámbium , Regulación de la Expresión Génica de las Plantas , Populus/genética , Xilema
3.
New Phytol ; 222(4): 1846-1861, 2019 06.
Artículo en Inglés | MEDLINE | ID: mdl-30548617

RESUMEN

In trees, dead and living cells of secondary xylem (wood) function collectively, rendering cell-to-cell communication challenging. Water and solutes are transported over long distances from the roots to the above-ground organs via vessels, the main component of wood, and then radially over short distances to the neighboring cells. This enables proper functioning of trees and integrates whole-plant activity. In this study, tracer loading, immunolocalization experiments and inhibitor assays were used to decipher the mechanisms enabling transport in wood of Acer pseudoplatanus (maple), Fraxinus excelsior (ash) and Populus tremula × tremuloides (poplar) trees. We show that tracer uptake from dead water-conducting vessels, elements of the apoplasm, to living vessel-associated cells (VACs) of the xylem parenchyma of the symplasm system proceeds via the endocytic pathway, including clathrin-mediated and clathrin-independent processes. These findings enhance our understanding of the transport pathways in complex wood tissue, providing experimental evidence of the involvement of VACs and endocytosis in radial uptake from vessels.


Asunto(s)
Endocitosis , Madera/metabolismo , Acer/metabolismo , Transporte Biológico , Brefeldino A/farmacología , Clatrina/metabolismo , Colorantes/metabolismo , Fraxinus/metabolismo , Modelos Biológicos , Haz Vascular de Plantas/citología , Populus/metabolismo
4.
Am J Bot ; 105(12): 1986-1994, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30548234

RESUMEN

PREMISE OF THE STUDY: We used the model species Physcomitrella patens to examine chirality in moss gametophores. Chirality is manifested in the direction of consecutive apical cell divisions, cell plate configurations, and deviations of leaf connecting lines from the vertical course. However, the frequencies of chiral configurations of all these processes as well as their mutual dependence-especially in the case of gametophore branching-are not known. Other moss species were checked to determine the universality of our findings. METHODS: The gametophore structure of Physcomitrella patens grown in the laboratory under controlled conditions was investigated using light microscopy and compared with that of other moss species collected from their natural stands. KEY RESULTS: In all investigated moss species, the tetrahedral apical cell exhibits either clockwise or counterclockwise consecutive divisions, and selection of this directionality in the primary axis is random. It is, however, related to cell plate configuration. If the plate is skewed, leaf-producing segments arising from the apical cell cleavage exhibit circumferential rotation. Three parallel lines connecting the leaves deviate from a vertical course, but always in the same direction as that of leaf initiation; thus, the angular distance between consecutive leaves increases to >120°. Lateral branches are exclusively antidromous. CONCLUSIONS: Gametophore chiral configuration appears to be useful in resolving problems of moss modular growth and branching. Morphological and anatomical evidence strongly suggests that an unknown direction-sensing mechanism controls the development of moss axial organs. We propose that leaves are responsible for a horizontal gradient of sugar signals that develops along the gametophore circumference, thus influencing branching-unit chirality.


Asunto(s)
Bryopsida/crecimiento & desarrollo , Células Germinativas de las Plantas/crecimiento & desarrollo , Tropismo
5.
Int J Mol Sci ; 19(3)2018 Mar 14.
Artículo en Inglés | MEDLINE | ID: mdl-29538317

RESUMEN

Shoot and root apical meristems (SAM and RAM, respectively) are crucial to provide cells for growth and organogenesis and therefore need to be maintained throughout the life of a plant. However, plants lacking the mitochondrial protease AtFTSH4 exhibit an intriguing phenotype of precocious cessation of growth at both the shoot and root apices when grown at elevated temperatures. This is due to the accumulation of internal oxidative stress and progressive mitochondria dysfunction. To explore the impacts of the internal oxidative stress on SAM and RAM functioning, we study the expression of selected meristem-specific (STM, CLV3, WOX5) and cell cycle-related (e.g., CYCB1, CYCD3;1) genes at the level of the promoter activity and/or transcript abundance in wild-type and loss-of-function ftsh4-1 mutant plants grown at 30 °C. In addition, we monitor cell cycle progression directly in apical meristems and analyze the responsiveness of SAM and RAM to plant hormones. We show that growth arrest in the ftsh4-1 mutant is caused by cell cycle dysregulation in addition to the loss of stem cell identity. Both the SAM and RAM gradually lose their proliferative activity, but with different timing relative to CYCB1 transcriptional activity (a marker of G2-M transition), which cannot be compensated by exogenous hormones.


Asunto(s)
Proteínas de Arabidopsis/genética , Proliferación Celular , Meristema/genética , Metaloproteasas/genética , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Proteínas de Arabidopsis/metabolismo , Ciclo Celular , Ciclina B/metabolismo , Meristema/crecimiento & desarrollo , Metaloproteasas/metabolismo , Mitocondrias/metabolismo , Estrés Oxidativo
6.
J Org Chem ; 80(1): 165-73, 2015 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-25396296

RESUMEN

Two novel vitamin D analogues of the hormone 1α,25-(OH)2D3 modified at C-7, namely, 7-methyl-1α,25-(OH)2D3 (12) and 7-methyl-1α,25-(OH)2-19-nor-D3 (26), were synthesized and biologically evaluated to gain further insights into the structure-function relationships of vitamin D. Key steps in the synthesis of 12 include the functionalization at C-7 by an efficient regioselective hydrostannylation of an allene precursor, and the construction of the triene framework by a palladium-catalyzed intramolecular cyclization-Suzuki-Miyaura coupling cascade. Since the calcitriol analogue 12 was prone to conversion into its previtamin D form by thermal equilibration, the corresponding 19-nor-compound 26 was also synthesized. The diene moiety of compound 26 was constructed by a modified Julia coupling. UV data as well as X-ray analysis indicate that introduction of the methyl group at C-7 results in a significant deviation from planarity of the 5,7-diene moiety. The new vitamin D analogues 12 and 26 retained good VDR binding ability.


Asunto(s)
Vitamina D/análogos & derivados , Vitamina D/síntesis química , Modelos Moleculares , Conformación Molecular , Receptores de Calcitriol/química , Receptores de Calcitriol/metabolismo , Estereoisomerismo , Relación Estructura-Actividad , Vitamina D/química , Vitamina D/metabolismo
7.
Ecotoxicol Environ Saf ; 108: 36-41, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25038270

RESUMEN

Because of its high mobility in ecosystems, mercury is one of the main toxic threats to the environment, and its concentration must be carefully controlled. To fulfill this need, we selected terrestrial mosses with different characteristic life forms: orthotropic and endohydric Polytrichum commune and plagiotropic and ectohydric Pleurozium schreberi. The concentrations of mercury were determined in both species growing together at sites situated approximately 0.75, 1.5, 3 and 6km to the north, south, east and west, respectively of five known mercury polluters. The mercury concentrations reflected the emissions produced by the surrounding industry, reaching values of 0.44mgkg(-1) in P. schreberi and 0.79mgkg(-1) in P. commune in the vicinity of the chlor-alkali industry. To determine how long a load of Hg would remain in the mosses after mercury emitters restricted releases of Hg to the atmosphere, accumulation and desorption experiments were performed. We compared the two moss species collected from clean and moderately and heavily mercury-polluted sites. After eight days of exposure to mercury, P. schreberi accumulated up to 25mgkg(-1) of Hg, and P. commune accumulated up to 31mgkg(-1). Both in the field and in the experiment, P. commune accumulated significantly higher concentrations of Hg than did P. schreberi, most likely because of its surface morphology, which is likely to enhance the capture of metal from the atmosphere. After sixteen days of exposure, mercury changed the structure of the plasma membrane and affected organelles such as the nuclei and chloroplasts, leading to cell disintegration and death. The negative effects of mercury on the functioning of living cells appeared first in the older leaves of P. schreberi. After 64 days growing in the absence of Hg, P. schreberi clearly retained only 10-14% of the initially accumulated Hg, while P. commune retained 10-21%.


Asunto(s)
Bryopsida/química , Monitoreo del Ambiente/métodos , Mercurio/análisis , Contaminantes Atmosféricos/análisis , Contaminantes Atmosféricos/toxicidad , Atmósfera , Bryopsida/efectos de los fármacos , Ecosistema , Mercurio/toxicidad , Polonia
8.
J Clin Med ; 13(7)2024 Mar 23.
Artículo en Inglés | MEDLINE | ID: mdl-38610612

RESUMEN

Background: The purpose of the study was to determine whether the use of ß-adrenoceptor antagonists (ß-blockers) can affect metalloproteinase 2 (MMP-2) and its tissue inhibitor (TIMP-2) in patients with chronic kidney disease (CKD) on conservative treatment. Methods: The circulating MMP-2/TIMP-2 system, proinflammatory cytokines (tumor necrosis factor-alpha (TNF-α) and interleukin-6 (IL-6), and the marker of oxidative stress-Cu/Zn superoxide dismutase (Cu/Zn SOD)-were measured in 23 CKD patients treated with ß-blockers [ß-blockers (+)] and in 27 CKD patients not receiving the above medication [ß-blockers (-)]. Results: The levels of MMP-2, TIMP-2, and IL-6 were significantly lower in the ß-blockers (+) than in the ß-blockers (-) group, whereas Cu/Zn SOD concentrations were not affected by ß-blocker use. There was a strong, independent association between MMP-2 and TIMP-2 in both analyzed patient groups. In the ß-blockers (+) group, MMP-2 levels were indirectly related to the signs of inflammation, whereas in the ß-blockers (-) group, the alterations in the MMP-2/TIMP-2 system were associated with the oxidative stress marker and CKD etiology. Conclusions: This study is the first to suggest that the use of ß-blockers was associated with the reduction in IL-6 and the MMP-2/TIMP-2 system in CKD, providing a pharmacological rationale for the use of ß-blockers to reduce inflammation and abnormal vascular remodeling in CKD.

9.
Sci Total Environ ; 902: 166023, 2023 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-37541516

RESUMEN

Microplastics in the aquatic environment can interact with aquatic plants, but the consequences of these interactions are poorly understood. Therefore, the aim of this study was to investigate the effects of microplastics commonly found in the environment, namely polyethylene (PE) fragments, polyacrylonitrile (PAN) fibres, tire wear (TW) particles under a relevant environmental concentration (5000 particles/L) on the growth, cell viability, physiology, and elemental content of the aquatic macrophyte Elodea canadensis. The effects of microplastics were compared to those of natural wood particles. The results showed that all types of microplastics adhered to plant tissues, but the effect on leaves (leaf damage area) was greatest at PE > PAN > TW, while the effect of natural particles was comparable to that of the control. None of the microplastics studied affected plant growth, lipid, carbohydrate, or protein content. Electron transport system activity was significantly higher in plants exposed to PAN fibres and PE fragments, but also when exposed to natural particles, while chlorophyll a content was negatively affected only by PE fragments and TW particles. Elemental analysis of plant tissue showed that in some cases PAN fibres and TW particles caused increased metal content. The results of this study indicated that aquatic macrophytes may respond differently to exposure to microplastics than to natural particles, likely through the combined effects of mechanical damage and chemical stress.


Asunto(s)
Hydrocharitaceae , Contaminantes Químicos del Agua , Microplásticos/metabolismo , Plásticos/toxicidad , Plásticos/metabolismo , Clorofila A/metabolismo , Hydrocharitaceae/metabolismo , Supervivencia Celular , Polietileno/metabolismo , Contaminantes Químicos del Agua/análisis
10.
J Pain Res ; 16: 4025-4036, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38054109

RESUMEN

Purpose: Fibromyalgia (FM) and Chronic Fatigue Syndrome (CFS) affect 0.4% and 1% of society, respectively, and the prevalence of these pain syndromes is increasing. To date, no strong association between these syndromes and the genetic background of affected individuals has been shown. Therefore, it is plausible that epigenetic changes might play a role in the development of these syndromes. Patients and Methods: Three previous studies have attempted to elaborate the involvement of genome-wide methylation changes in blood cells in the development of fibromyalgia and chronic fatigue syndrome. These studies included 22 patients with fibromyalgia and 127 patients with CFS, and the results of the studies were largely discrepant. Contradicting results of those studies may be attributed to differences in the omics data analysis approaches used in each study. We reanalyzed the data collected in these studies using an updated and coherent data-analysis framework. Results: Overall, the methylation changes that we observed overlapped with previous results only to some extent. However, the gene set enrichment analyses based on genes annotated to methylation changes identified in each of the analyzed datasets were surprisingly coherent and uniformly associated with the physiological processes that, when affected, may result in symptoms characteristic of fibromyalgia and chronic fatigue syndrome. Conclusion: Methylomes of the blood cells of patients with FM and CFS in three independent studies have shown methylation changes that appear to be implicated in the pathogenesis of these syndromes.

11.
Comput Struct Biotechnol J ; 21: 5446-5450, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38022697

RESUMEN

Publicly available repositories such as Genomic Data Commons or Gene Expression Omnibus are a valuable research resource useful for hypothesis driven research as well as validation of the results of new experiments. Frequently however, the use of those opulent resources is challenging because advanced computational skills are required to mine deposited data. To address this challenge, we have developed eDAVE, a user-friendly, web and desktop interface enabling intuitive and robust analysis of almost 12 000 methylomes and transcriptomes from over 200 types of cells and tissues deposited in the Genomic Data Commons repository. The application is implemented in Python, supported for major browsers and available at: https://edave.pum.edu.pl/.

12.
Sci Rep ; 13(1): 16102, 2023 09 26.
Artículo en Inglés | MEDLINE | ID: mdl-37752189

RESUMEN

Recent reports based on a substantial number of cases, warrant need for population-based research to determine implications of constitutional methylation of tumor suppressor genes such as BRCA1 occurring in healthy tissue in the prediction of cancer. However, the detection of the constitutional methylation in DNA extracted from blood has already been shown to be technologically challenging, mainly because epimutations appear to be present in blood at a very low level. The analytical sensitivity required for low-level methylation detection can be provided by NGS, but this technique is still labor and cost-intensive. We assessed if PCR-based MS-HRM and BeadChip microarray technologies, which are standardized and cost-effective technologies for methylation changes screening, provide a sufficient level of analytical sensitivity for constitutional BRCA1 methylation detection in blood samples. The study included whole blood samples from 67 healthy women, 35 with previously confirmed and 32 with no detectable BRCA1 promoter methylation for which we performed both MS-HRM based BRCA1 gene methylation screening and genome wide methylation profiling with EPIC microarray. Our results shown, that low-level BRCA1 methylation can be effectively detected in DNA extracted from blood by PCR-based MS-HRM. At the same time, EPIC microarray does not provide conclusive results to unambiguously determine the presence of BRCA1 constitutional methylation in MS-HRM epimutation positive samples. The analytical sensitivity of MS-HRM is sufficient to detect low level BRCA1 constitutional epimutation in DNA extracted from blood and BeadChip technology-based microarrays appear not to provide that level of analytical sensitivity.


Asunto(s)
Genes BRCA1 , Trabajo de Parto , Femenino , Humanos , Embarazo , Proyectos de Investigación , Perfil Genético , Estado de Salud , Proteína BRCA1/genética
13.
Am J Bot ; 99(11): 1745-55, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23125435

RESUMEN

PREMISE OF THE STUDY: The picture of how long-distance transport proceeds in trees is still far from being complete. Beside the apoplasmic pathway, transport undoubtedly also takes place within the system of living cells in the secondary xylem and cambial region. Because detailed, thorough studies of the symplasmic routes in woody branches, using direct localization with fluorescent tracers, had not been done, here we focused on the main routes of long-distance symplasmic transport in xylem and cambial tissues and analyzed in detail tracer distribution in the rays on the extended cambial surface in branches of Acer pseudoplatanus and Populus tremula ×P. tremuloides. METHODS: Fluorescent tracers were loaded into branches through the vascular system, then their distribution in xylem and cambial regions was analyzed. KEY RESULTS: Tracer signal was present in the symplast of axial and radial xylem parenchyma cells and in both types of cambial cells. The living cells of xylem parenchyma and of the cambium were symplasmically interconnected via xylem rays. Tracer distribution in rays was uneven on the extended cambial surface; cambial regions with intensively or sparsely dyed rays alternated along the vertical axis of analyzed branches. CONCLUSIONS: Symplasmic, long-distance transport is present between the living cells of xylem and the cambial region in woody branches. The uneven distribution of fluorescent tracers in cambial rays along the stems is surprising and suggests the presence of an intrinsic pattern caused by an unknown mechanism.


Asunto(s)
Acer/metabolismo , Cámbium/metabolismo , Populus/metabolismo , Xilema/metabolismo , Acer/citología , Transporte Biológico , Cámbium/citología , Membrana Celular/metabolismo , Pared Celular/metabolismo , Fluoresceínas/química , Fluoresceínas/metabolismo , Colorantes Fluorescentes/química , Colorantes Fluorescentes/metabolismo , Cinética , Modelos Biológicos , Hojas de la Planta/citología , Hojas de la Planta/metabolismo , Tallos de la Planta/citología , Tallos de la Planta/metabolismo , Populus/citología , Rodaminas/química , Rodaminas/metabolismo , Xilema/citología
14.
Cancers (Basel) ; 14(14)2022 Jul 13.
Artículo en Inglés | MEDLINE | ID: mdl-35884461

RESUMEN

Bortezomib (BTZ) is proteasome inhibitor, effectively used in the treatment of multiple myeloma, but frequently discontinued due to peripheral neuropathy, which develops in patients after consecutive treatment cycles. The molecular mechanisms affected by BTZ in neuronal cells, which result in neuropathy, remain unknown. However, BTZ is unlikely to lead to permanent morphological nerve damage, because neuropathy reverses after discontinuation of treatment, and nerve cells have very limited renewal capacity. We have previously shown that BTZ induces methylation changes in SH-SY5Y cells, which take part in the development of treatment resistance. Here, we hypothesized that BTZ affects the methylomes of mature neurons, and these changes are associated with BTZ neurotoxicity. Thus, we studied methylomes of neuronal cells, differentiated from the LUHMES cell line, after cycles of treatment with BTZ. Our results show that BTZ induces specific methylation changes in mature neurons, which are not present in SH-SY5Y cells after BTZ treatment. These changes appear to affect genes involved in morphogenesis, neurogenesis, and neurotransmission. Furthermore, identified methylation changes are significantly enriched within binding sites of transcription factors previously linked to neuron physiology, including EBF, PAX, DLX, LHX, and HNF family members. Altogether, our results indicate that methylation changes are likely to be involved in BTZ neurotoxicity.

15.
Nutrients ; 14(24)2022 Dec 16.
Artículo en Inglés | MEDLINE | ID: mdl-36558512

RESUMEN

Non-alcoholic fatty liver disease (NAFLD) is associated with dysfunction of the intestinal microbiota and its metabolites. We aimed to assess whether replacing bread with high-fiber buns beneficially changes the metabolome in NAFLD patients. This study involved 27 adult patients with NAFLD validated by FibroScan® (CAP ≥ 234 dB/m). Patients were asked to replace their existing bread for two meals with high-fiber buns. In this way, the patients ate two rolls every day for 2 months. The following parameters were analysed (at the beginning and after 2 months): the anthropometric data (BIA), eating habits (24 h food recalls), gut barrier markers (lipopolysaccharide S and liposaccharide binding protein (LPS, LBP)), serum short-chain fatty acids (SCFAs) and branched chain fatty acids (BCFAs) by GC/MS chromatography, as well as serum metabolites (by 1H NMR spectroscopy). After 2 months of high-fiber roll consumption, the reduction of liver steatosis was observed (change Fibroscan CAP values from 309-277 dB/m). In serum propionate, acetate, isovaleric, and 2-methylbutyric decrease was observed. Proline, choline and one unknown molecule had higher relative concentration in serum at endpoint. A fiber-targeted dietary approach may be helpful in the treatment of patients with NAFLD, by changing the serum microbiota metabolome.


Asunto(s)
Enfermedad del Hígado Graso no Alcohólico , Adulto , Humanos , Enfermedad del Hígado Graso no Alcohólico/metabolismo , Proyectos Piloto , Estado Nutricional , Dieta , Metaboloma
16.
Clin Epigenetics ; 14(1): 157, 2022 11 30.
Artículo en Inglés | MEDLINE | ID: mdl-36447285

RESUMEN

BACKGROUND: High caloric diet and lack of physical activity are considered main causes of NAFLD, and a change in the diet is still the only effective treatment of this disease. However, molecular mechanism of the effectiveness of diet change in treatment of NAFLD is poorly understood. We aimed to assess the involvement of epigenetic mechanisms of gene expression regulation in treatment of NAFLD. Eighteen participants with medium- to high-grade steatosis were recruited and trained to follow the Mediterranean diet modified to include fibre supplements. At three timepoints (baseline, after 30 and 60 days), we evaluated adherence to the diet and measured a number of physiological parameters such as anthropometry, blood and stool biochemistry, liver steatosis and stiffness. We also collected whole blood samples for genome-wide methylation profiling and histone acetylation assessment. RESULTS: The diet change resulted in a decrease in liver steatosis along with statistically significant, but a minor change in BMI and weight of our study participants. The epigenetic profiling of blood cells identified significant genome-wide changes of methylation and acetylation with the former not involving regions directly regulating gene expression. Most importantly, we were able to show that identified blood methylation changes occur also in liver cells of NAFLD patients and the machine learning-based classifier that we build on those methylation changes was able to predict the stage of liver fibrosis with ROC AUC = 0.9834. CONCLUSION: Methylomes of blood cells from NAFLD patients display a number of changes that are most likely a consequence of unhealthy diet, and the diet change appears to reverse those epigenetic changes. Moreover, the methylation status at CpG sites undergoing diet-related methylation change in blood cells stratifies liver biopsies from NAFLD patients according to fibrosis grade.


Asunto(s)
Dieta Mediterránea , Enfermedad del Hígado Graso no Alcohólico , Humanos , Enfermedad del Hígado Graso no Alcohólico/genética , Metilación de ADN , Biopsia , Cirrosis Hepática/genética
17.
Plants (Basel) ; 10(6)2021 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-34205276

RESUMEN

Woody plants are characterised by a highly complex vascular system, wherein the secondary xylem (wood) is responsible for the axial transport of water and various substances. Previous studies have focused on the dead conductive elements in this heterogeneous tissue. However, the living xylem parenchyma cells, which constitute a significant functional fraction of the wood tissue, have been strongly neglected in studies on tree biology. Although there has recently been increased research interest in xylem parenchyma cells, the mechanisms that operate in these cells are poorly understood. Therefore, the present review focuses on selected roles of xylem parenchyma and its relevance in wood functioning. In addition, to elucidate the importance of xylem parenchyma, we have compiled evidence supporting the hypothesis on the significance of parenchyma cells in tree functioning and identified the key unaddressed questions in the field.

18.
J Clin Pathol ; 74(11): 692-696, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-33431485

RESUMEN

Covalent modifications of nucleotides in genetic material have been known from the beginning of the last century. Currently, one of those modifications referred to as DNA methylation, is impacting personalised medicine both as a treatment target and a biomarker source for clinical disease management. In this short review, we describe landmark discoveries that led to the elucidation of the DNA methylation importance in the cell's physiology and clarification of its role as one of the major processes in disease pathology. We also describe turning points in the development of methodologies to study this modification, which ultimately resulted in the development of in-vitro diagnostic kits targeting disease related DNA methylation changes as biomarkers.


Asunto(s)
5-Metilcitosina/historia , Biomarcadores , Islas de CpG/genética , Metilación de ADN/genética , Epigénesis Genética , 5-Metilcitosina/análisis , 5-Metilcitosina/fisiología , Metilación de ADN/fisiología , Historia del Siglo XX , Humanos
19.
Sci Rep ; 11(1): 9846, 2021 05 10.
Artículo en Inglés | MEDLINE | ID: mdl-33972578

RESUMEN

The anticancer activity of bortezomib (BTZ) has been increasingly studied in a number of indications and promising results for the use of this treatment have been shown in neuroblastoma. As BTZ treatment is usually administered in cycles, the development of resistance and side effects in patients undergoing therapy with BTZ remains a major challenge for the clinical usage of this compound. Common resistance development also means that certain cells are able to survive BTZ treatment and bypass molecular mechanisms that render BTZ anticancer activity. We studied the methylome of neuroblastoma cells that survived BTZ treatment. Our results indicate that BTZ induces pronounced genome wide methylation changes in cells which recovered from the treatment. Functional analyses of identified methylation changes demonstrated they were involved in key cancer pathology pathways. These changes may allow the cells to bypass the primary anticancer activity of BTZ and develop a treatment resistant and proliferative phenotype. To study whether cells surviving BTZ treatment acquire a proliferative phenotype, we repeatedly treated cells which recovered from the first round of BTZ treatment. The repetitive treatment led to induction of the extraordinary proliferative potential of the cells, that increased with subsequent treatments. As we did not observe similar effects in cells that survived treatment with lenalidomide, and non-treated cells cultured under the same experimental conditions, this phenomenon seems to be BTZ specific. Overall, our results indicate that methylation changes may play major role in the development of BTZ resistance.


Asunto(s)
Antineoplásicos/farmacología , Bortezomib/farmacología , Metilación de ADN/efectos de los fármacos , Resistencia a Antineoplásicos/efectos de los fármacos , Neuroblastoma/tratamiento farmacológico , Antineoplásicos/uso terapéutico , Bortezomib/uso terapéutico , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Proliferación Celular/genética , Supervivencia Celular/genética , Resistencia a Antineoplásicos/genética , Epigénesis Genética/efectos de los fármacos , Regulación Neoplásica de la Expresión Génica/efectos de los fármacos , Humanos , Lenalidomida/farmacología , Lenalidomida/uso terapéutico , Neuroblastoma/genética
20.
Sci Rep ; 11(1): 2650, 2021 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-33514787

RESUMEN

The aim of this trial was to determine whether a toothpaste with microcrystalline hydroxyapatite is not inferior to a fluoride toothpaste in prevention of caries in children. This double-blinded randomized control trial compared two toothpastes regarding the occurrence of caries lesions using International Caries Detection and Assessment System (ICDAS) ≥ code 1 on the primary dentition within 336 days. The test group used a fluoride-free hydroxyapatite toothpaste three times daily while control group used a toothpaste with fluoride. 207 children were included in the intention-to-treat analysis; 177 of them finished the study per protocol. An increase in caries ICDAS ≥ code 1 per tooth was observed in 72.7% of the hydroxyapatite-group (n = 88), compared with 74.2% of the fluoride-group (n = 89). The exact one-sided upper 95% confidence limit for the difference in proportion of participants with ICDAS increase ≥ 1 (-1.4%) was 9.8%, which is below the non-inferiority margin of 20% demonstrating non-inferiority of hydroxyapatite compared to the fluoride control toothpaste. This RCT showed for the first time, that in children, the impact of the daily use of a toothpaste with microcrystalline hydroxyapatite on enamel caries progression in the primary dentition is not inferior to a fluoride control toothpaste (Clinical Trials NCT03553966).


Asunto(s)
Caries Dental/prevención & control , Durapatita/administración & dosificación , Pastas de Dientes/administración & dosificación , Niño , Preescolar , Caries Dental/epidemiología , Método Doble Ciego , Femenino , Fluoruros/administración & dosificación , Humanos , Masculino
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