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1.
Spinal Cord ; 54(9): 649-55, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26782842

RESUMEN

STUDY DESIGN: Experimental study. OBJECTIVES: This study evaluated distraction-induced delayed spinal cord injury in a porcine model. SETTING: Department of Orthopedics, Korea University Guro Hospital, Seoul, Korea. METHODS: Global osteotomy of three columns was performed on the thirteenth thoracic vertebrae with 13 pigs. The osteotomized vertebrae were distracted to 57-103% of segmental vertebral height (SVH) length, which was less than the distraction length that induces prompt SCI. The vertebral height was maintained until the loss of motor-evoked potential (MEP) signals with continuous distraction. The distraction distance and the time at which SCI occurred were measured, and distraction was then released to observe MEP recovery patterns. RESULTS: We found delayed SCI in 8 of the 12 pigs, with a mean 20.9 mm (range 19-25 mm) and 10.7 min (range 8-12 min) of continuous spinal distraction, which was equivalent to 74.3% (68-84%) of SVH and 3.63% (3.42-4.31%) of thoracolumbar spinal length. A continuous 74.3% SVH distraction over an average of 10.7 min caused a delayed SCI, which was indicated by mild histologic changes in the spinal cord. Recovery patterns from SCI after distraction release were compatible with the degree of histological change; however, these patterns differed from the previously investigated prompt type of SCI. CONCLUSION: Late onset injury due to continuous spinal distraction, which is comparable to iatrogenic SCI in spinal correction surgery, is important for understanding the impact of corrective surgery.


Asunto(s)
Modelos Animales de Enfermedad , Potenciales Evocados Motores/fisiología , Procedimientos Ortopédicos/efectos adversos , Traumatismos de la Médula Espinal/etiología , Traumatismos de la Médula Espinal/patología , Médula Espinal/fisiopatología , Animales , Electromiografía , Osteotomía/efectos adversos , Estimulación Física , Porcinos , Vértebras Torácicas/cirugía , Vigilia
2.
Spinal Cord ; 53(11): 827-34, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26123207

RESUMEN

STUDY DESIGN: Experimental study. OBJECTIVES: To study the role of surface temperature as an adjunct to motor evoked potentials (MEPs) in rabbit spinal cord injury (SCI) model. SETTING: Department of Orthopedics, Korea University Guro Hospital, Seoul, Korea. METHODS: Rabbits (n =18) were divided into Complete (n = 9) and Incomplete (n = 9) SCI groups. Complete SCI was defined as being non-responsive to a wake-up test with loss of MEPs after transection of spinal cord. Incomplete SCI was defined as being responsive to a wake-up test with significant attenuation (⩾ 80%) of MEPs after impaction on spinal cord. Surface temperature of upper and lower extremities, core temperature and MEPs signals were checked before, during and after SCI for 20 min. A wake-up test was conducted and spinal cord was histologicaly evaluated. RESULTS: Experimental conditions between the two groups were statistically similar (P > 0.005 for all values). After SCI, upper extremity temperatures did not change in either group (P > 0.005); however, the surface temperature of the lower extremities in the Complete SCI Group elevated to 1.7 ± 0.5°C in comparison to 0.5 ± 0.1°C in the Incomplete SCI Group (P < 0.001). The scores of wake-up test in the Incomplete SCI Group were significantly different from that of the Complete SCI Group (P < 0.001), while white and gray matter damage was variable on histology. CONCLUSIONS: Monitoring of changes of body surface temperature of the lower extremities can be potentially used to identify the completeness of SCI in a rabbit model.


Asunto(s)
Temperatura Corporal/fisiología , Modelos Animales de Enfermedad , Potenciales Evocados Motores/fisiología , Traumatismos de la Médula Espinal/fisiopatología , Animales , Electroencefalografía , Masculino , Músculo Esquelético/fisiopatología , Dimensión del Dolor , Conejos
3.
Z Gastroenterol ; 53(9): 1084-6, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26367024

RESUMEN

Previous abdominal surgery is the most common cause of mechanical small bowel obstruction. However, in patients with no history of abdominal surgery, the diagnosis and treatment of mechanical small bowel obstruction is difficult. A persistent omphalomesenteric duct remnant is a rare finding that typically presents in the pediatric population and is extremely rare in patients aged > 60 years. In the present report, we describe the case of an omphalomesenteric duct cyst causing small bowel obstruction in a 69-year-old man with no history of a surgical procedure.


Asunto(s)
Quistes/complicaciones , Quistes/diagnóstico , Hernia Abdominal/diagnóstico , Hernia Abdominal/etiología , Obstrucción Intestinal/etiología , Conducto Vitelino/patología , Anciano , Diagnóstico Diferencial , Humanos , Obstrucción Intestinal/diagnóstico , Intestino Delgado , Masculino
4.
Science ; 241(4861): 71-4, 1988 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-3133767

RESUMEN

The three-dimensional structure of ribulose-1,5-biphosphate carboxylase-oxygenase (RuBisCO), has been determined at 2.6 A resolution. This enzyme initiates photosynthesis by combining carbon dioxide with ribulose bisphosphate to form two molecules of 3-phosphoglycerate. In plants, RuBisCO is built from eight large (L) and eight small (S) polypeptide chains, or subunits. Both S chains and the NH2-terminal domain (N) of L are antiparallel beta, "open-face-sandwich" domains with four-stranded beta sheets and flanking alpha helices. The main domain (B) of L is an alpha/beta barrel containing most of the catalytic residues. The active site is in a pocket at the opening of the barrel that is partly covered by the N domain of a neighboring L chain. The domain contacts of the molecule and its conserved residues are discussed in terms of this structure.


Asunto(s)
Plantas/enzimología , Ribulosa-Bifosfato Carboxilasa , Secuencia de Aminoácidos , Sitios de Unión , Sustancias Macromoleculares , Datos de Secuencia Molecular , Conformación Proteica , Rhodospirillum rubrum/enzimología , Difracción de Rayos X
5.
Science ; 272(5264): 1013-6, 1996 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-8638123

RESUMEN

Zinc is present in presynaptic nerve terminals throughout the mammalian central nervous system and likely serves as an endogenous signaling substance. However, excessive exposure to extracellular zinc can damage central neurons. After transient forebrain ischemia in rats, chelatable zinc accumulated specifically in degenerating neurons in the hippocampal hilus and CA1, as well as in the cerebral cortex, thalamus, striatum, and amygdala. This accumulation preceded neurodegeneration, which could be prevented by the intraventricular injection of a zinc chelating agent. The toxic influx of zinc may be a key mechanism underlying selective neuronal death after transient global ischemic insults.


Asunto(s)
Encéfalo/patología , Ataque Isquémico Transitorio/metabolismo , Ataque Isquémico Transitorio/patología , Degeneración Nerviosa , Neuronas/patología , Zinc/metabolismo , Aminoquinolinas , Animales , Encéfalo/metabolismo , Muerte Celular , Quelantes/farmacología , Ditizona/farmacología , Ácido Edético/farmacología , Colorantes Fluorescentes , Hipocampo/metabolismo , Hipocampo/patología , Microscopía Fluorescente , Neuronas/metabolismo , Terminales Presinápticos/metabolismo , Células Piramidales/metabolismo , Células Piramidales/patología , Ratas , Compuestos de Tosilo
6.
J Neuroendocrinol ; 30(1)2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29247563

RESUMEN

Citicoline (cytidine 5'-diphosphocholine) is an important precursor for the synthesis of neuronal plasma membrane phospholipids, mainly phosphatidylcholine. The administration of citicoline serves as a choline donor for the synthesis of acetylcholine. Citicoline has been shown to reduce the neuronal injury in animal models with cerebral ischaemia and in clinical trials of stroke patients. Citicoline is currently being investigated in a multicentre clinical trial. However, citicoline has not yet been examined the context of hypoglycaemia-induced neuronal death. To clarify the therapeutic impact of citicoline in hypoglycaemia-induced neuronal death, we used a rat model with insulin-induced hypoglycaemia. Acute hypoglycaemia was induced by i.p. injection of regular insulin (10 U kg-1 ) after overnight fasting, after which iso-electricity was maintained for 30 minutes. Citicoline injections (500 mg/kg, i.p.) were started immediately after glucose reperfusion. We found that post-treatment of citicoline resulted in significantly reduced neuronal death, oxidative injury and microglial activation in the hippocampus compared to vehicle-treated control groups at 7 days after induced hypoglycaemia. Citicoline administration after hypoglycaemia decreased immunoglobulin leakage via blood-brain barrier disruption in the hippocampus compared to the vehicle group. Citicoline increased choline acetyltransferase expression for phosphatidylcholine synthesis after hypoglycaemia. Altogether, the present findings suggest that neuronal membrane stabilisation by citicoline administration can save neurones from the degeneration process after hypoglycaemia, as seen in several studies of ischaemia. Therefore, the results suggest that citicoline may have therapeutic potential to reduce hypoglycaemia-induced neuronal death.


Asunto(s)
Muerte Celular/efectos de los fármacos , Citidina Difosfato Colina/farmacología , Hipoglucemia/metabolismo , Neuronas/efectos de los fármacos , Fármacos Neuroprotectores/farmacología , Estrés Oxidativo/efectos de los fármacos , Animales , Modelos Animales de Enfermedad , Hipoglucemia/inducido químicamente , Insulina , Masculino , Microglía/efectos de los fármacos , Microglía/metabolismo , Neuronas/metabolismo , Nootrópicos/farmacología , Ratas , Ratas Sprague-Dawley
7.
J Bone Joint Surg Br ; 88(9): 1192-6, 2006 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16943471

RESUMEN

We carried out an MRI study of the lumbar spine in 15 patients with achondroplasia to evaluate the degree of stenosis of the canal. They were divided into asymptomatic and symptomatic groups. We measured the sagittal canal diameter, the sagittal cord diameter, the interpedicular distance at the mid-pedicle level and the cross-sectional area of the canal and spinal cord at mid-body and mid-disc levels. The MRI findings showed that in achondroplasia there was a significant difference between the groups in the cross-sectional area of the body canal at the upper lumbar levels. Patients with a narrower canal are more likely to develop symptoms of spinal stenosis than others.


Asunto(s)
Acondroplasia/patología , Vértebras Lumbares/patología , Imagen por Resonancia Magnética/métodos , Estenosis Espinal/patología , Adolescente , Adulto , Cauda Equina/patología , Femenino , Humanos , Masculino , Persona de Mediana Edad
8.
Nucleic Acids Res ; 28(21): 4051-8, 2000 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-11058099

RESUMEN

DNA ligases are enzymes required for the repair, replication and recombination of DNA. DNA ligases catalyse the formation of phosphodiester bonds at single-strand breaks in double-stranded DNA. Despite their occurrence in all organisms, DNA ligases show a wide diversity of amino acid sequences, molecular sizes and properties. The enzymes fall into two groups based on their cofactor specificity, those requiring NAD(+) for activity and those requiring ATP. The eukaryotic, viral and archael bacteria encoded enzymes all require ATP. NAD(+)-requiring DNA ligases have only been found in prokaryotic organisms. Recently, the crystal structures of a number of DNA ligases have been reported. It is the purpose of this review to summarise the current knowledge of the structure and catalytic mechanism of DNA ligases.


Asunto(s)
Secuencia Conservada , ADN Ligasas/química , ADN Ligasas/metabolismo , Adenosina Trifosfato/metabolismo , Secuencia de Aminoácidos , Animales , Sitios de Unión , Catálisis , ADN Ligasas/clasificación , Humanos , Modelos Moleculares , Datos de Secuencia Molecular , NAD/metabolismo , Estructura Terciaria de Proteína , Especificidad por Sustrato , Dedos de Zinc
9.
Structure ; 3(2): 189-99, 1995 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-7735835

RESUMEN

BACKGROUND: The movement of lipids between membranes is aided by lipid-transfer proteins (LTPs). Some LTPs exhibit broad specificity, transferring many classes of lipids, and are termed non-specific LTPs (ns-LTPs). Despite their apparently similar mode of action, no sequence homology exists between mammalian and plant ns-LTPs and no three-dimensional structure has been reported for any plant ns-LTP. RESULTS: We have determined the crystal structure of ns-LTP from maize seedlings by multiple isomorphous replacement and refined the structure to 1.9 A resolution. The protein comprises a single compact domain with four alpha-helices and a long C-terminal region. The eight conserved cysteines form four disulfide bridges (assigned as Cys4-Cys52, Cys14-Cys29, Cys30-Cys75, and Cys50-Cys89) resolving the ambiguity that remained from the chemical determination of pairings in the homologous protein from castor bean. Two of the bonds, Cys4-Cys52 and Cys50-Cys89, differ from what would have been predicted from sequence alignment with soybean hydrophobic protein. The complex between maize ns-LTP and hexadecanoate (palmitate) has also been crystallized and its structure refined to 1.8 A resolution. CONCLUSIONS: The fold of maize ns-LTP places it in a new category of all-alpha-type structure, first described for soybean hydrophobic protein. In the absence of a bound ligand, the protein has a tunnel-like hydrophobic cavity, which is large enough to accommodate a long fatty acyl chain. In the structure of the complex with palmitate, most of the acyl chain is buried inside this hydrophobic cavity.


Asunto(s)
Proteínas Portadoras/química , Proteínas de Plantas , Conformación Proteica , Zea mays/química , Secuencia de Aminoácidos , Proteínas Portadoras/metabolismo , Gráficos por Computador , Cristalografía por Rayos X , Modelos Moleculares , Datos de Secuencia Molecular , Palmitatos/metabolismo
10.
Structure ; 5(2): 173-85, 1997 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-9032073

RESUMEN

BACKGROUND: . Lipases, a family of enzymes which catalyze the hydrolysis of triglycerides, are widely distributed in many organisms. True lipases are distinguished from esterases by the characteristic interfacial activation they exhibit at an oil-water interface. Lipases are one of the most frequently used biocatalysts for organic reactions performed under mild conditions. Their biotechnological applications include food and oil processing and the preparation of chiral intermediates for the synthesis of enantiomerically pure pharmaceuticals. Recent structural studies on several lipases have provided some clues towards understanding the mechanisms of hydrolytic activity, interfacial activation, and stereoselectivity. This study was undertaken in order to provide structural information on bacterial lipases, which is relatively limited in comparison to that on the enzymes from other sources. RESULTS: . We have determined the crystal structure of a triacylglycerol lipase from Pseudomonas cepacia (PcL) in the absence of a bound inhibitor using X-ray crystallography. The structure shows the lipase to contain an alpha/beta-hydrolase fold and a catalytic triad comprising of residues Ser87, His286 and Asp264. The enzyme shares several structural features with homologous lipases from Pseudomonas glumae (PgL) and Chromobacterium viscosum (CvL), including a calcium-binding site. The present structure of PcL reveals a highly open conformation with a solvent-accessible active site. This is in contrast to the structures of PgL and PcL in which the active site is buried under a closed or partially opened 'lid', respectively. CONCLUSIONS: . PcL exhibits some structural features found in other lipases. The presence of the Ser-His-Asp catalytic triad, an oxyanion hole, and the opening of a helical lid suggest that this enzyme shares the same mechanisms of catalysis and interfacial activation as other lipases. The highly open conformation observed in this study is likely to reflect the activated form of the lipase at an oil-water interface. The structure suggests that the interfacial activation of bacterial lipases involves the reorganization of secondary structures and a large movement of the lid to expose the active site. This is similar to the mechanism described for other well characterized fungal and mammalian lipases.


Asunto(s)
Proteínas Bacterianas/química , Burkholderia cepacia/enzimología , Lipasa/química , Conformación Proteica , Secuencia de Aminoácidos , Sitios de Unión , Calcio/metabolismo , Chromobacterium/enzimología , Cristalografía por Rayos X , Modelos Moleculares , Datos de Secuencia Molecular , Pseudomonas/enzimología , Alineación de Secuencia , Homología de Secuencia de Aminoácido
11.
Structure ; 5(12): 1571-84, 1997 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-9438866

RESUMEN

BACKGROUND: A group of esterases, classified as carboxylesterases, hydrolyze carboxylic ester bonds with relatively broad substrate specificity and are useful for stereospecific synthesis and hydrolysis of esters. One such carboxylesterase from Pseudomonas fluorescens is a homodimeric enzyme, consisting of 218-residue subunits. It shows a limited sequence similarity to some members of the alpha/beta hydrolase superfamily. Although crystal structures of a number of serine esterases and lipases have been reported, structural information on carboxylesterases is very limited. This study was undertaken in order to provide such information and to understand a structural basis for the substrate specificity of this carboxylesterase. RESULTS: In this study, the crystal structure of carboxylesterase from P. fluorescens has been determined by the isomorphous replacement method and refined to 1.8 A resolution. Each subunit consists of a central seven-stranded beta sheet flanked by six alpha helices. The structure reveals the catalytic triad as Ser 114-His 199-Asp 168. The structure of the enzyme in complex with the inhibitor phenylmethylsulfonyl fluoride has also been determined and refined to 2.5 . The inhibitor is covalently attached to Ser 114 of both subunits, with the aromatic ring occupying a hydrophobic site defined by the aliphatic sidechains of Leu23, Ile58, Ile70, Met73 and Val170. No large structural changes are observed between the free and inhibitor-bound structures. CONCLUSIONS: Carboxylesterase from P. fluorescens has the alpha/beta hydrolase fold and the Ser-His-Asp catalytic triad. The active-site cleft in each subunit is formed by the six loops covering the catalytic serine residue. Three of the active-site loops in each subunit are involved in a head-to-head subunit interaction to form a dimer; it may be these extra structural elements, not seen in other esterases, that account for the inability of carboxylesterase to hydrolyze long chain fatty acids. As a result of dimerization, the active-site clefts from the two subunits merge to form holes in the dimer. The active-site clefts are relatively open and thus the catalytic residues are exposed to the solvent. An oxyanion hole, formed by nitrogen atoms of Leu23 and Gln115, is present in both the free and inhibitor-bound structures. An open active site, as well as a large binding pocket for the acid part of substrates, in P. fluorescens carboxylesterase may contribute to its relatively broad substrate specificity.


Asunto(s)
Hidrolasas de Éster Carboxílico/química , Cristalografía por Rayos X , Pseudomonas fluorescens/enzimología , Aniones , Sitios de Unión , Carboxilesterasa , Hidrolasas de Éster Carboxílico/antagonistas & inhibidores , Hidrolasas de Éster Carboxílico/metabolismo , Catálisis , Cristalización , Modelos Moleculares , Fluoruro de Fenilmetilsulfonilo/metabolismo , Fluoruro de Fenilmetilsulfonilo/farmacología , Unión Proteica , Pseudomonas fluorescens/química , Relación Estructura-Actividad , Especificidad por Sustrato
12.
Bone Joint J ; 98-B(5): 679-85, 2016 May.
Artículo en Inglés | MEDLINE | ID: mdl-27143741

RESUMEN

AIMS: The aim of this study was a quantitative analysis of a surgeon's learning curve for scoliosis surgery and the relationship between the surgeon's experience and post-operative outcomes, which has not been previously well described. PATIENTS AND METHODS: We have investigated the operating time as a function of the number of patients to determine a specific pattern; we analysed factors affecting the operating time and compared intra- and post-operative outcomes. We analysed 47 consecutive patients undergoing scoliosis surgery performed by a single, non-trained scoliosis surgeon. Operating time was recorded for each of the four parts of the procedures: dissection, placement of pedicle screws, reduction of the deformity and wound closure. RESULTS: The median operating time was 310 minutes (interquartile range 277.5 to 432.5). The pattern showed a continuous decreasing trend in operating time until the patient number reached 23 to 25, after which it stabilised with fewer patient-dependent changes. The operating time was more affected by the patient number (r =- 0.75) than the number of levels fused (r = 0.59). Blood loss (p = 0.016) and length of stay in hospital (p = 0.012) were significantly less after the operating time stabilised. Post-operative functional outcome scores and the rate of complications showed no significant differences. TAKE HOME MESSAGE: We describe a detailed learning curve for scoliosis surgery based on a single surgeon's practise, providing useful information for novice scoliosis surgeons and for those responsible for training in spinal surgery. Cite this article: Bone Joint J 2016;98-B:679-85.


Asunto(s)
Curva de Aprendizaje , Tempo Operativo , Escoliosis/cirugía , Fusión Vertebral/educación , Adolescente , Pérdida de Sangre Quirúrgica , Femenino , Humanos , Tiempo de Internación , Masculino , Tornillos Pediculares , Estudios Retrospectivos
13.
J Mol Biol ; 275(2): 347-63, 1998 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-9466914

RESUMEN

The Kunitz-type trypsin inhibitor from soybean (STI) consists of 181 amino acid residues with two disulfide bridges. Its crystal structures have been determined in complex with porcine pancreatic trypsin in two crystal forms (an orthorhombic form at 1.75 A resolution and a tetragonal form at 1.9 A) and in the free state at 2.3 A resolution. They have been refined to crystallographic R-values of 18.9%, 21.6% and 19.8%, respectively. The three models of STI reported here represent a significant improvement over the partial inhibitor structure in the complex, which was previously determined at a nominal resolution of 2.6 A by the multiple isomorphous replacement method. This study provides the first high-resolution picture of the complex between a Kunitz-type proteinase inhibitor with its cognate proteinase. Many of the external loops of STI show high B-factors, both in the free and the complexed states, except the reactive site loop whose B-factors are dramatically reduced upon complexation. The reactive site loop of STI adopts a canonical conformation similar to those in other substrate-like inhibitors. The P1 carbonyl group displays no out-of-plane displacement and thus retains a nominal trigonal planar geometry. Modeling studies on the complex between a homologous Kunitz-type trypsin inhibitor DE-3 from Erythrina caffra and the human tissue-type plasminogen activator reveal a new insight into the specific interactions which could play a crucial role in their binding.


Asunto(s)
Erythrina , Plantas Medicinales , Pliegue de Proteína , Estructura Secundaria de Proteína , Inhibidores de Serina Proteinasa/química , Activador de Tejido Plasminógeno/química , Inhibidor de la Tripsina de Soja de Kunitz/química , Tripsina/química , Secuencia de Aminoácidos , Animales , Simulación por Computador , Cristalografía por Rayos X , Humanos , Modelos Moleculares , Datos de Secuencia Molecular , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Inhibidores de Serina Proteinasa/metabolismo , Porcinos , Activador de Tejido Plasminógeno/antagonistas & inhibidores , Tripsina/metabolismo , Inhibidor de la Tripsina de Soja de Kunitz/metabolismo
14.
J Mol Biol ; 197(2): 363-5, 1987 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-3681999

RESUMEN

A new crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase (EC 4.1.1.39) from Nicotiana tabacum has been obtained at alkaline pH with polyethylene glycol 8000 in the presence of a non-ionic detergent, beta-octyl glucoside. The crystals are grown at room temperature by the hanging-drop vapor diffusion technique from a protein solution containing enzyme complexed with CO2, Mg2+, and the transition state analog 2-C-carboxy-D-arabinitol-1,5-bisphosphate. The crystals belong to the the space group P3(1)21 (or P3(2)21) with the cell parameters a = 204.6 A, and c = 117.4 A (1 A = 0.1 nm). The asymmetric unit contains half (L4S4: L, large subunit, 53,000 Mr; S, small subunit, 15,000 Mr) of a hexadecameric molecule (L8S8, 540,000 Mr). The crystals diffract to at least 2.6 A Bragg spacing and are suitable for X-ray structure determination.


Asunto(s)
Nicotiana/enzimología , Plantas Tóxicas , Ribulosa-Bifosfato Carboxilasa , Cristalización , Ribulosa-Bifosfato Carboxilasa/metabolismo
15.
J Mol Biol ; 288(4): 623-34, 1999 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-10329168

RESUMEN

The crystal structures of highly thermostable xylose isomerases from Thermus thermophilus (TthXI) and Thermus caldophilus (TcaXI), both with the optimum reaction temperature of 90 degrees C, have been determined by X-ray crystallography. The model of TcaXI has been refined to an R-factor of 17.8 % for data extending to 2.3 A and that of TthXI to 17.1 % for data extending to 2.2 A. The tetrameric arrangement of subunits characterized by the 222-symmetry and the tertiary fold of each subunit in both TcaXI and TthXI are basically the same as in other xylose isomerases. Each monomer is composed of two domains. Domain I (residues 1 to 321) folds into the (beta/alpha)8-barrel. Domain II (residues 322 to 387), lacking beta-strands, makes extensive contacts with domain I of an adjacent subunit. Each monomer of TcaXI contains ten beta-strands, 15 alpha-helices, and six 310-helices, while that of TthXI contains ten beta-strands, 16 alpha-helices, and five 310-helices. Although the electron density does not indicate the presence of bound metal ions in the present models of both TcaXI and TthXI, the active site residues show the conserved structural features. In order to understand the structural basis for thermostability of these enzymes, their structures have been compared with less thermostable XIs from Arthrobacter B3728 and Actinoplanes missouriensis (AXI and AmiXI), with the optimum reaction temperatures of 80 degrees C and 75 degrees C, respectively. Analyses of various factors that may affect protein thermostability indicate that the possible structural determinants of the enhanced thermostability of TcaXI/TthXI over AXI/AmiXI are (i) an increase in ion pairs and ion-pair networks, (ii) a decrease in the large inter-subunit cavities, (iii) a removal of potential deamidation/isoaspartate formation sites, and (iv) a shortened loop.


Asunto(s)
Isomerasas Aldosa-Cetosa/química , Thermus/enzimología , Secuencia de Aminoácidos , Cristalografía por Rayos X , Estabilidad de Enzimas , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Homología de Secuencia de Aminoácido , Especificidad de la Especie
16.
J Mol Biol ; 229(1): 235-8, 1993 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-8421303

RESUMEN

Large crystals of alpha-amylase from Bacillus subtilis have been obtained at room temperature using polyethylene glycol 6000 as precipitant. They grow to typical dimensions of 0.25 mm x 0.3 mm x 2.0 mm in five days. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit cell dimensions of a = 85.46 A, b = 166.5 A and c = 332.7 A. The asymmetric unit seems to contain eight molecules of alpha-amylase, with crystal volume per protein mass (Vm) of 2.69 A3/Da and solvent content of 54.3% by volume. Despite a very long c-axis, the crystals diffracted to about 2.2 A Bragg spacing using the rotating anode X-rays and were resistant to damage by X-rays. Thus they are suitable for structure determination by X-ray methods at high resolution. X-ray diffraction data have been collected to 3.4 A Bragg spacing from a native crystal.


Asunto(s)
Bacillus subtilis/enzimología , alfa-Amilasas/química , Cristalización , Difracción de Rayos X
17.
J Mol Biol ; 262(2): 71-6, 1996 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-8831780

RESUMEN

The ClpP component Clp protease from Escherichia coli has been crystallized and examined by X-ray crystallography and self-rotation function calculations. The crystal belongs to the monoclinic space group P2(1) with unit cell dimensions of a = 196.9 A, b = 104.3 A, c = 162.4 A and beta = 98.3 degrees. The X-ray diffraction pattern extends at least to 2.5 A Bragg spacing when exposed to CuK alpha X-rays. Self-rotation function analyses indicate that the ClpP oligomer has 72-point group symmetry. This symmetry suggests that the ClpP oligomer is a tetradecamer, (ClpP)14, consisting of two heptamers, (ClpP)7 stacked on top of each other in a head-to-head fashion. The measurement of crystal density indicates that two independent copies of the ClpP oligomers are present in the asymmetric unit, giving a crystal volume per protein mass (VM) of 2.73 A3/Da and a solvent content of 54.9% (v/v). Self-rotation function calculations are consistent with the presence of two ClpP tetradecamers in the asymmetric unit. The Patterson function suggests that a translation of x = 0.5 and y = 0.5 relates a pair of ClpP oligomers in one asymmetric unit to another pair in the other asymmetric unit. And the two independent tetradecamers in one asymmetric unit are related by a relative rotation of about 18 degrees around the 7-fold axis.


Asunto(s)
Adenosina Trifosfatasas , Cisteína Endopeptidasas/química , Escherichia coli/enzimología , Complejos Multienzimáticos/química , Serina Endopeptidasas/química , Cristalografía por Rayos X , Endopeptidasa Clp , Complejo de la Endopetidasa Proteasomal , Conformación Proteica , Estructura Terciaria de Proteína
18.
J Mol Biol ; 276(2): 437-48, 1998 Feb 20.
Artículo en Inglés | MEDLINE | ID: mdl-9512714

RESUMEN

This study describes the high-resolution X-ray structure of the non-specific lipid transfer protein (ns-LTP) from rice seeds in the unliganded state. The model has been refined to a crystallographic R-factor of 0.186 for 8.0 to 1.6 A data (with Fo > 2 sigma F). It accounts for all 91 amino acid residues, 68 water molecules, one sulfate ion, and two molecules of 3-[cyclohexylamino]-1-propanesulfonic acid. The root-mean-square deviations from ideal bond lengths and angles are 0.017 A and 1.76 degrees, respectively. The overall fold of rice ns-LTP is very similar to that of maize ns-LTP. A superposition of 91 common C alpha atoms in rice and maize ns-LTPs, both in the unliganded state, gives a root-mean-square deviation of 1.2 A. Large structural differences from the crystal structure of maize ns-LTP are observed in two regions: the loop between two alpha-helices H1 and H2, where one residue deletion (Gln21 of maize sequence) occurs, and the C-terminal region around Tyr79. The C-terminal region of rice protein is somewhat collapsed into the hydrophobic cavity. As a consequence, its hydrophobic cavity is considerably smaller than that of maize protein (144 A3 versus 408 A3 for van der Waals cavity volumes), despite a high level of sequence identity (79%) between them. In the rice ns-LTP structure, the side-chain of Arg44 partially blocks the mouth of the cavity, while the side-chain of Ile81 effectively closes the other end by protruding into the cavity. And the side-chain of Tyr79 divides the cavity into two parts, with the larger part being shielded from the solvent. The present study illuminates the structure-function relationship of rice ns-LTP and allows a detailed structural comparison with other plant ns-LTPs.


Asunto(s)
Proteínas Portadoras/química , Oryza/química , Proteínas de Plantas/química , Secuencia de Aminoácidos , Cristalografía por Rayos X , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Homología de Secuencia de Aminoácido
19.
J Mol Biol ; 293(5): 1133-44, 1999 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-10547291

RESUMEN

The Bowman-Birk trypsin inhibitor from barley seeds (BBBI) consists of 125 amino acid residues with two inhibitory loops. Its crystal structure in the free state has been determined by the multiwavelength anomalous diffraction (MAD) method and has been refined to a crystallographic R-value of 19.1 % for 8.0-1.9 A data. This is the first report on the structure of a 16 kDa double-headed Bowman-Birk inhibitor (BBI) from monocotyledonous plants and provides the highest resolution picture of a BBI to date. The BBBI structure consists of 11 beta-strands and the loops connecting these beta-strands but it lacks alpha-helices. BBBI folds into two compact domains of similar tertiary structure. Each domain shares the same overall fold with 8 kDa dicotyledonous BBIs. The five disulfide bridges in each domain are a subset of the seven disulfide bridges in 8 kDa dicotyledonous BBIs. Two buried water molecules form hydrogen bonds to backbone atoms in the core of each domain. One interesting feature of this two-domain inhibitor structure is that the two P1 residues (Arg17 and Arg76) are approximately 40 A apart, allowing the two reactive-site loops to bind to and to inhibit two trypsin molecules simultaneously and independently. The conformations of the reactive-site loops of BBBI are highly similar to those of other substrate-like inhibitors. This structure provides the framework for modeling of the 1:2 complex between BBBI and trypsin.


Asunto(s)
Hordeum/química , Proteínas de Plantas/química , Semillas/química , Inhibidor de la Tripsina de Soja de Bowman-Birk/química , Secuencia de Aminoácidos , Sitios de Unión , Cristalización , Cristalografía por Rayos X , Disulfuros/metabolismo , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Peso Molecular , Proteínas de Plantas/metabolismo , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Alineación de Secuencia , Solventes , Tripsina/química , Tripsina/metabolismo , Inhibidor de la Tripsina de Soja de Bowman-Birk/metabolismo , Inhibidores de Tripsina , Agua/metabolismo , alfa-Amilasas/antagonistas & inhibidores
20.
J Mol Biol ; 229(4): 1157-8, 1993 Feb 20.
Artículo en Inglés | MEDLINE | ID: mdl-8445642

RESUMEN

Ecotin, a novel serine protease inhibitor isolated from Escherichia coli, has been crystallized using polyethylene glycol 1500 as the precipitating agent. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit cell parameters of a = 39.22 A, b = 84.86 A, and c = 98.74 A. The asymmetric unit contains one dimeric molecule of ecotin, with a crystal volume per protein mass (Vm) of 2.55 A3/Da and a solvent content of 51.8% by volume. The crystals diffract to at least 2.2 A using a conventional X-ray source, and X-ray data have been collected to 2.7 A Bragg spacing from a native crystal.


Asunto(s)
Proteínas Bacterianas/química , Proteínas de Escherichia coli , Escherichia coli/química , Proteínas Periplasmáticas , Inhibidores de Proteasas/química , Cristalización , Difracción de Rayos X
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