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1.
RNA ; 30(3): 298-307, 2024 Feb 16.
Artículo en Inglés | MEDLINE | ID: mdl-38164606

RESUMEN

Several methods are available to visualize and assess the kinetics and efficiency of elemental steps of protein biosynthesis. However, each of these methods has its own limitations. Here, we present a novel, simple and convenient tool for monitoring stepwise in vitro translation initiated by BODIPY-Met-tRNA. Synthesis and release of very short, 1-7 amino acids, BODIPY-labeled peptides, can be monitored using urea-polyacrylamide gel electrophoresis. Very short BODIPY-labeled oligopeptides might be resolved this way, in contrast to widely used Tris-tricine gel electrophoresis, which is suitable to separate peptides larger than 1 kDa. The method described in this manuscript allows one to monitor the steps of translation initiation, peptide transfer, translocation, and termination as well as their inhibition at an unprecedented single amino acid resolution.


Asunto(s)
Compuestos de Boro , Péptidos , Aminoacil-ARN de Transferencia , Aminoacil-ARN de Transferencia/química , Péptidos/metabolismo , ARN de Transferencia/metabolismo , Electroforesis en Gel de Poliacrilamida , Biosíntesis de Proteínas
2.
Arch Biochem Biophys ; 746: 109735, 2023 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-37652149

RESUMEN

The popular fungicide fluazinam is known to exhibit an unusual cyclic pattern of the protonophoric uncoupling activity in isolated rat liver mitochondria (RLM), with membrane deenergization followed by spontaneous recoupling in the minute scale, which is associated with glutathione conjugation of fluazinam catalyzed by glutathione-S-transferase (GST). Here, we compare the fluazinam effect on RLM with that on rat kidney (RKM) and heart (RHM) mitochondria by monitoring three bioenergetic parameters: oxygen consumption rate, mitochondrial membrane potential and reduction of nucleotides. Only in RLM, the uncoupling activity of fluazinam was transient, i.e. disappeared in a few minutes, whereas in RKM and RHM it was stable in this time scale. We attribute this difference to the increased activity of mitochondrial GST in liver. We report data on the detection of glutathione-fluazinam conjugates by mass-spectrometry, thin layer chromatography and capillary electrophoresis after incubation of fluazinam with RLM but not with RKM, which supports the assumption of the tissue specificity of the conjugation.


Asunto(s)
Fungicidas Industriales , Animales , Ratas , Hígado , Mitocondrias , Glutatión , Glutatión Transferasa
3.
Int J Mol Sci ; 24(17)2023 Aug 26.
Artículo en Inglés | MEDLINE | ID: mdl-37686081

RESUMEN

Proteins with extended polyglutamine regions are associated with several neurodegenerative disorders, including Huntington's disease. Intracellular proteolytic processing of these proteins is not well understood. In particular, it is unclear whether long polyglutamine fragments resulting from the proteolysis of these proteins can be potentially cleaved by the proteasome. Here, we studied the susceptibility of the glutamine-glutamine bond to proteolysis by the proteasome using oligoglutamine-containing peptides with a fluorophore/quencher pair. We found that the addition of the 11S proteasomal regulator (also known as PA28) significantly accelerated the hydrolysis of oligoglutamine-containing peptides by the 20S proteasome. Unexpectedly, a similar effect was observed for the 26S proteasome in the presence of the 11S regulator. LC/MS data revealed that the hydrolysis of our peptides with both 20S and 26S proteasomes leads to N-terminal fragments containing two or three glutamine residues and that the hydrolysis site does not change after the addition of the 11S regulator. This was confirmed by the docking experiment, which shows that the preferred hydrolysis site is located after the second/third glutamine residue. Inhibitory analysis revealed that trypsin-like specificity is mainly responsible for the proteasomal hydrolysis of the glutamine-glutamine bond. Together, our results indicate that both 20S and 26S proteasomes are capable of degrading the N-terminal part of oligoglutamine fragments, while the 11S regulator significantly accelerates the hydrolysis without changing its specificity. This data suggests that proteasome activity may be enhanced in relation to polyglutamine substrates present in neurons in the early stages of polyglutamine disorders.


Asunto(s)
Encéfalo , Péptidos , Complejo de la Endopetidasa Proteasomal , Proteolisis , Animales , Ratones , Encéfalo/enzimología , Complejo de la Endopetidasa Proteasomal/metabolismo , Hidrólisis , Péptidos/metabolismo , Tripsina/metabolismo
4.
Nat Chem Biol ; 16(10): 1071-1077, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32601485

RESUMEN

The increase in multi-drug resistant pathogenic bacteria is making our current arsenal of clinically used antibiotics obsolete, highlighting the urgent need for new lead compounds with distinct target binding sites to avoid cross-resistance. Here we report that the aromatic polyketide antibiotic tetracenomycin (TcmX) is a potent inhibitor of protein synthesis, and does not induce DNA damage as previously thought. Despite the structural similarity to the well-known translation inhibitor tetracycline, we show that TcmX does not interact with the small ribosomal subunit, but rather binds to the large subunit, within the polypeptide exit tunnel. This previously unappreciated binding site is located adjacent to the macrolide-binding site, where TcmX stacks on the noncanonical basepair formed by U1782 and U2586 of the 23S ribosomal RNA. Although the binding site is distinct from the macrolide antibiotics, our results indicate that like macrolides, TcmX allows translation of short oligopeptides before further translation is blocked.


Asunto(s)
Amycolatopsis/efectos de los fármacos , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Amycolatopsis/genética , Amycolatopsis/metabolismo , Sitios de Unión , Microscopía por Crioelectrón , Farmacorresistencia Bacteriana , Escherichia coli , Células HEK293 , Humanos , Pruebas de Sensibilidad Microbiana , Modelos Moleculares , Mutación , Naftacenos/química , Naftacenos/farmacología , Unión Proteica , Biosíntesis de Proteínas/efectos de los fármacos , Conformación Proteica , Ribosomas/metabolismo
5.
Mol Cell ; 56(4): 531-40, 2014 Nov 20.
Artículo en Inglés | MEDLINE | ID: mdl-25306919

RESUMEN

We demonstrate that the antibiotic amicoumacin A (AMI) is a potent inhibitor of protein synthesis. Resistance mutations in helix 24 of the 16S rRNA mapped the AMI binding site to the small ribosomal subunit. The crystal structure of bacterial ribosome in complex with AMI solved at 2.4 Å resolution revealed that the antibiotic makes contacts with universally conserved nucleotides of 16S rRNA in the E site and the mRNA backbone. Simultaneous interactions of AMI with 16S rRNA and mRNA and the in vivo experimental evidence suggest that it may inhibit the progression of the ribosome along mRNA. Consistent with this proposal, binding of AMI interferes with translocation in vitro. The inhibitory action of AMI can be partly compensated by mutations in the translation elongation factor G.


Asunto(s)
Antibacterianos/química , Cumarinas/química , Biosíntesis de Proteínas/efectos de los fármacos , Inhibidores de la Síntesis de la Proteína/química , Estabilidad del ARN , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Secuencia de Bases , Sitios de Unión , Cumarinas/farmacología , Cristalografía por Rayos X , Farmacorresistencia Bacteriana , Escherichia coli , Pruebas de Sensibilidad Microbiana , Modelos Moleculares , Factor G de Elongación Peptídica/genética , Inhibidores de la Síntesis de la Proteína/farmacología , ARN Mensajero/metabolismo , Subunidades Ribosómicas Grandes Bacterianas/química , Subunidades Ribosómicas Pequeñas Bacterianas/química , Staphylococcus aureus/genética , Thermus thermophilus
6.
Biochemistry (Mosc) ; 87(4): 356-365, 2022 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-35527374

RESUMEN

2-Oxoacids are involved in a number of important metabolic processes and can be used as biomarkers in some human diseases. A new optimized method for quantification of 2,4-dinitrophenylhydrazine derivatives of 2-oxoacids using high-performance liquid chromatography was developed based on available techniques for quantification of 2-oxoacids in mammalian brain. The use of the 2,4-dinitrophenylhydrazine derivatives of 2-oxoacids was shown to be more advantageous in comparison with the previously used phenylhydrazine derivatives, due to a high chemical stability of the former. Here, we determined the concentrations of pyruvate, glyoxylate, 2-oxoglutarate, 2-oxomalonate, and 4-methylthio-2-oxobutyrate in the methanol/acetic acid extracts of the rat brain using the developed method, as well discussed the procedures for the sample preparation in analysis of mammalian brain extracts. The validation parameters of the method demonstrated that the quantification limits for each of the analyzed of 2-oxoacids was 2 nmol/mg tissue. The developed method facilitates identification of subtle changes in the tissue and cellular content of 2-oxoacids as (patho)physiological biomarkers of metabolism in mammalian tissues.


Asunto(s)
Cetoácidos , Ácido Pirúvico , Animales , Encéfalo , Cromatografía Líquida de Alta Presión/métodos , Mamíferos , Ratas
7.
Biochemistry (Mosc) ; 87(9): 871-889, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-36180983

RESUMEN

Design and synthesis of conjugates consisting of the macrolide antibiotic desmycosin and fragments of the antibacterial peptide oncocin were performed in attempt to develop new antimicrobial compounds. New compounds were shown to bind to the E. coli 70S ribosomes, to inhibit bacterial protein synthesis in vitro, as well as to suppress bacterial growth. The conjugates of N-terminal hexa- and tripeptide fragments of oncocin and 3,2',4''-triacetyldesmycosin were found to be active against some strains of macrolide-resistant bacteria. By simulating molecular dynamics of the complexes of these compounds with the wild-type bacterial ribosomes and with ribosomes, containing A2059G 23S RNA mutation, the specific structural features of their interactions were revealed.


Asunto(s)
Péptidos Antimicrobianos , Escherichia coli , Antibacterianos/química , Péptidos Catiónicos Antimicrobianos/farmacología , Proteínas Bacterianas/metabolismo , Escherichia coli/metabolismo , Macrólidos/análisis , Macrólidos/metabolismo , Inhibidores de la Síntesis de la Proteína/química , ARN/metabolismo , Ribosomas/química , Tilosina/análogos & derivados
8.
Int J Mol Sci ; 23(1)2022 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-35008907

RESUMEN

The mitochondrial membrane potential (∆Ψ) is the driving force providing the electrical component of the total transmembrane potential of hydrogen ions generated by proton pumps, which is utilized by the ATP synthase. The role of ∆Ψ is not limited to its role in bioenergetics since it takes part in other important intracellular processes, which leads to the mandatory requirement of the homeostasis of ∆Ψ. Conventionally, ∆Ψ in living cells is estimated by the fluorescence of probes such as rhodamine 123, tetramethylrodamine, etc. However, when assessing the fluorescence, the possibility of the intracellular/intramitochondrial modification of the rhodamine molecule is not taken into account. Such changes were revealed in this work, in which a comparison of normal (astrocytic) and tumor (glioma) cells was conducted. Fluorescent microscopy, flow cytometry, and mass spectrometry revealed significant modifications of rhodamine molecules developing over time, which were prevented by amiodarone apparently due to blocking the release of xenobiotics from the cell and their transformation with the participation of cytochrome P450. Obviously, an important role in these processes is played by the increased retention of rhodamines in tumor cells. Our data require careful evaluation of mitochondrial ∆Ψ potential based on the assessment of the fluorescence of the mitochondrial probe.


Asunto(s)
Potencial de la Membrana Mitocondrial , Mitocondrias/metabolismo , Sondas Moleculares/metabolismo , Rodamina 123/metabolismo , Animales , Astrocitos/metabolismo , Extractos Celulares , Línea Celular Tumoral , Fluorescencia , Glioma/metabolismo , Ratas , Factores de Tiempo
9.
Int J Mol Sci ; 22(5)2021 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-33673708

RESUMEN

Nucleic acid aptamers are generally accepted as promising elements for the specific and high-affinity binding of various biomolecules. It has been shown for a number of aptamers that the complexes with several related proteins may possess a similar affinity. An outstanding example is the G-quadruplex DNA aptamer RHA0385, which binds to the hemagglutinins of various influenza A virus strains. These hemagglutinins have homologous tertiary structures but moderate-to-low amino acid sequence identities. Here, the experiment was inverted, targeting the same protein using a set of related, parallel G-quadruplexes. The 5'- and 3'-flanking sequences of RHA0385 were truncated to yield parallel G-quadruplex with three propeller loops that were 7, 1, and 1 nucleotides in length. Next, a set of minimal, parallel G-quadruplexes with three single-nucleotide loops was tested. These G-quadruplexes were characterized both structurally and functionally. All parallel G-quadruplexes had affinities for both recombinant hemagglutinin and influenza virions. In summary, the parallel G-quadruplex represents a minimal core structure with functional activity that binds influenza A hemagglutinin. The flanking sequences and loops represent additional features that can be used to modulate the affinity. Thus, the RHA0385-hemagglutinin complex serves as an excellent example of the hypothesis of a core structure that is decorated with additional recognizing elements capable of improving the binding properties of the aptamer.


Asunto(s)
Aptámeros de Nucleótidos/metabolismo , G-Cuádruplex , Glicoproteínas Hemaglutininas del Virus de la Influenza/metabolismo , Virus de la Influenza A/metabolismo , Infecciones por Orthomyxoviridae/metabolismo , Animales , Aptámeros de Nucleótidos/química , Pollos , Cricetinae , Glicoproteínas Hemaglutininas del Virus de la Influenza/química , Infecciones por Orthomyxoviridae/virología
10.
J Cell Biochem ; 120(3): 3124-3136, 2019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30272820

RESUMEN

The cholesterol hydroxylase/lyase (CHL) system, consisting of cytochrome P450scc, adrenodoxin (Adx) and adrenodoxin reductase (AdR), initiates mammalian steroidogenesis, converting cholesterol to pregnenolone. The foot-and-mouth disease virus 2A-based method allows to express multiple proteins from a single transcript. We developed a 2A-based multicistronic system for the coexpression of three bovine CHL system proteins as the self-processing polyprotein pCoxIV-P450scc-2A-Adx-2A-AdR-GFP (pCoxIV-CHL-GFP), with a cleavable N-terminal mitochondrial targeting presequence. HEK293T cells transfected with plasmid, containing complementary DNA (cDNA) for pCoxIV-CHL-GFP, efficiently performed the expression of P450scc-2A, targeted to mitochondria, and Adx-2A, AdR-GFP and the fusion protein Adx-2A-AdR-GFP, which were predominantly localized in the cytosol. Despite the spatial separation of expressed P450scc and redox partners, the transfected HEK293T cells were able to convert the steroid substrates of cytochrome P450scc to pregnenolone, whereas control HEK293T cells were not catalytically active. The presence of 2А peptide residue on the C-terminus of P450scc did not preclude its enzymatic activity. HEK293T cells transfected with a vector directing the synthesis of only P450scc-2A demonstrated cytochrome P450scc activity comparable to that of cells expressing all three CHL system components, and to that of nature steroidogenic cells. Thus, the P450scc activity detected in cells transfected with both constructed plasmids was the result of the effective functional coupling of the bovine cytochrome P450scc and endogenous mitochondrial electron transport proteins of HEK293T cells. The produced pregnenolone did not undergo further conversion to progesterone, which indicates the absence of catalytically active 3ß-hydroxysteroid dehydrogenase. Therefore, HEK293T cells may be suitable for the expression of steroidogenic enzymes and the study of their characteristics.


Asunto(s)
Enzima de Desdoblamiento de la Cadena Lateral del Colesterol/metabolismo , Mitocondrias/metabolismo , 3-Hidroxiesteroide Deshidrogenasas/metabolismo , Adrenodoxina/metabolismo , Western Blotting , Enzima de Desdoblamiento de la Cadena Lateral del Colesterol/genética , Cromatografía Líquida de Alta Presión , Ferredoxina-NADP Reductasa , Citometría de Flujo , Células HEK293 , Humanos , Microscopía Fluorescente , Plásmidos/genética , Pregnenolona/metabolismo
11.
Phys Chem Chem Phys ; 21(42): 23355-23363, 2019 Nov 14.
Artículo en Inglés | MEDLINE | ID: mdl-31621727

RESUMEN

Penetrating cations are widely used for the design of bioactive mitochondria-targeted compounds. The introduction of various substituents into the phenyl rings of dodecyltriphenylphosphonium and the measurement of the flip-flop of the synthesized cations by the current relaxation method revealed that methyl groups accelerated significantly the cation penetration through the lipid membrane, depending on the number of groups introduced. However, halogenation slowed down the penetration of the analogues. This result is strictly opposite to the flip-flop acceleration observed for halogenated tetraphenylborate anions. Density functional theory and the polarizable continuum solvent model were used to calculate the solvation energies of methyltriphenylphosphonium and methyltriphenylborate analogues. A good agreement was demonstrated between the difference in the free energy of ion solvation in water and octane and the absolute value of the central free energy barrier estimated from experimental data. Our results reveal that increasing the size of the lipophilic ion can lead to both acceleration and deceleration of the transmembrane flip-flop rate depending on the substituent and sign of the ion. This finding also emphasizes the different nature of ion-water interactions for structurally similar substituted hydrophobic anions and cations.


Asunto(s)
Halógenos/química , Membrana Dobles de Lípidos/química , Teoría Funcional de la Densidad , Electricidad , Interacciones Hidrofóbicas e Hidrofílicas , Iones/química , Compuestos Organofosforados/química , Solventes/química , Tetrafenilborato/química , Agua/química
12.
Biochim Biophys Acta Biomembr ; 1860(2): 329-334, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29038022

RESUMEN

The present study demonstrated for the first time the interaction between adenosine 3',5'-cyclic monophosphate (cAMP), one of the most important signaling compounds in living organisms, and the mitochondria-targeted antioxidant plastoquinonyl-decyltriphenylphosphonium (SkQ1). The data obtained on model liquid membranes and human platelets revealed the ability of SkQ1 to selectively transport cAMP, but not guanosine 3',5'-cyclic monophosphate (cGMP), across both artificial and natural membranes. In particular, SkQ1 elicited translocation of cAMP from the source to the receiving phase of a Pressman-type cell, while showing low activity with cGMP. Importantly, only conjugate with plastoquinone, but not dodecyl-triphenylphosphonium, was effective in carrying cAMP. In human platelets, SkQ1 also appeared to serve as a carrier of cAMP, but not cGMP, from outside to inside the cell, as measured by phosphorylation of the vasodilator stimulated phosphoprotein. The SkQ1-induced transfer of cAMP across the plasma membrane found here can be tentatively suggested to interfere with cAMP signaling pathways in living cells.


Asunto(s)
Membrana Celular/metabolismo , AMP Cíclico/metabolismo , Membranas Artificiales , Compuestos Onio/metabolismo , Compuestos Organofosforados/metabolismo , Plastoquinona/metabolismo , Animales , Transporte Biológico , Plaquetas/metabolismo , GMP Cíclico/metabolismo , Membrana Eritrocítica/metabolismo , Humanos , Liposomas/metabolismo , Compuestos Onio/química , Compuestos Organofosforados/química , Fosforilación , Plastoquinona/química , Ratas
13.
Biochim Biophys Acta Biomembr ; 1859(3): 377-387, 2017 03.
Artículo en Inglés | MEDLINE | ID: mdl-28011176

RESUMEN

In search for new effective uncouplers of oxidative phosphorylation, we studied 4-aryl amino derivatives of a fluorescent group 7-nitrobenz-2-oxa-1,3-diazol (NBD). In our recent work (Denisov et al., Bioelectrochemistry, 2014), NBD-conjugated alkyl amines (NBD-Cn) were shown to exhibit uncoupling activity. It was concluded that despite a pKa value being about 10, the expected hindering of the uncoupling activity could be overcome by insertion of an alkyl chain. There is evidence in the literature that the introduction of an aryl substituent in the 4-amino NBD group shifts the pKa to neutral values. Here we report the data on the properties of a number of 4-arylamino derivatives of NBD, namely, alkylphenyl-amino-NBD (Cn-phenyl-NBD) with varying alkyl chain Cn. By measuring the electrical current across planar bilayer lipid membrane, the protonophoric activity of Cn-phenyl-NBD at neutral pH grew monotonously from C1- to C6-phenyl-NBD. All of these compounds increased the respiration rate and reduced the membrane potential of isolated rat liver mitochondria. Importantly, the uncoupling action of C6- and C4-phenyl-NBD was partially reversed by glutamate, diethyl pyrocarbonate (DEPC), 6-ketocholestanol, and carboxyatractyloside, thus pointing to the involvement of membrane proteins in the uncoupling activity of Cn-phenyl-NBD in mitochondria. The pronounced recoupling effect of DEPC, an inhibitor of an aspartate-glutamate carrier (AGC), and that of its substrates for the first time highlighted AGC participation in the action of potent uncouplers on mitochondria. C6-phenyl-NBD produced strong antimicrobial effect on Bacillus subtilis, which manifested itself in cell membrane depolarization and suppression of bacterial growth at submicromolar concentrations.


Asunto(s)
Antibacterianos/farmacología , Proteínas de la Membrana/química , Oxadiazoles/química , Fosforilación Oxidativa/efectos de los fármacos , Sistemas de Transporte de Aminoácidos Acídicos/química , Sistemas de Transporte de Aminoácidos Acídicos/metabolismo , Animales , Antibacterianos/química , Antibacterianos/metabolismo , Antiportadores/química , Antiportadores/metabolismo , Bacillus subtilis/efectos de los fármacos , Dietil Pirocarbonato/química , Dietil Pirocarbonato/metabolismo , Membrana Dobles de Lípidos/química , Membrana Dobles de Lípidos/metabolismo , Potenciales de la Membrana/efectos de los fármacos , Proteínas de la Membrana/metabolismo , Mitocondrias Hepáticas/efectos de los fármacos , Mitocondrias Hepáticas/metabolismo , Oxadiazoles/metabolismo , Oxadiazoles/farmacología , Ratas
14.
Antimicrob Agents Chemother ; 60(12): 7481-7489, 2016 12.
Artículo en Inglés | MEDLINE | ID: mdl-27736765

RESUMEN

In order to accelerate drug discovery, a simple, reliable, and cost-effective system for high-throughput identification of a potential antibiotic mechanism of action is required. To facilitate such screening of new antibiotics, we created a double-reporter system for not only antimicrobial activity detection but also simultaneous sorting of potential antimicrobials into those that cause ribosome stalling and those that induce the SOS response due to DNA damage. In this reporter system, the red fluorescent protein gene rfp was placed under the control of the SOS-inducible sulA promoter. The gene of the far-red fluorescent protein, katushka2S, was inserted downstream of the tryptophan attenuator in which two tryptophan codons were replaced by alanine codons, with simultaneous replacement of the complementary part of the attenuator to preserve the ability to form secondary structures that influence transcription termination. This genetically modified attenuator makes possible Katushka2S expression only upon exposure to ribosome-stalling compounds. The application of red and far-red fluorescent proteins provides a high signal-to-background ratio without any need of enzymatic substrates for detection of the reporter activity. This reporter was shown to be efficient in high-throughput screening of both synthetic and natural chemicals.


Asunto(s)
Antibacterianos/farmacología , Escherichia coli/efectos de los fármacos , Ensayos Analíticos de Alto Rendimiento , Biosíntesis de Proteínas/efectos de los fármacos , Ribosomas/efectos de los fármacos , Transcripción Genética/efectos de los fármacos , Daño del ADN , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Colorantes Fluorescentes/química , Genes Reporteros , Ingeniería Genética , Proteínas Luminiscentes/genética , Proteínas Luminiscentes/metabolismo , Regiones Promotoras Genéticas , Ribosomas/genética , Respuesta SOS en Genética , Proteína Fluorescente Roja
15.
Biochim Biophys Acta ; 1837(1): 149-58, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24076107

RESUMEN

In our search for fluorescent uncouplers of oxidative phosphorylation, three esters of fluorescein, n-butyl-, n-octyl-, and n-dodecyl-oxycarbonyl-fluorescein (C4-FL, C8-FL, C12-FL) were synthesized and characterized. With increasing liposomal lipid content, the long-chain alkyl derivatives of fluorescein (C8-FL, C12-FL and commercially available C18-FL), but not C4-FL and unsubstituted fluorescein, exhibited an increase in fluorescence polarization reflecting the dye binding to liposomes. C12-FL induced proton permeability in lipid membranes, while C4-FL was inactive. In contrast to C4-FL and C18-FL, C12-FL and C8-FL increased the respiration rate and decreased the membrane potential of isolated rat liver mitochondria with half-maximal effective concentrations of 700nM and 300nM, respectively. The effect of Cn-FL on the respiration correlated with that on proton permeability of the inner mitochondrial membrane, as measured by induction of mitochondria swelling in the potassium acetate medium. Binding of C8-FL to mitochondria depended on their energization, which was apparently associated with pH gradient generation across the inner mitochondrial membrane in the presence of a respiratory substrate. In wild-type yeast cells, C12-FL localized predominantly in plasma membrane, whereas in AD1-8 mutants lacking MDR pumps, it stained cytoplasmic organelles with some preference for mitochondria. Fluorescent uncouplers can be useful as a tool for determining their localization in a cell or distribution between different tissues in a living animal by fluorescent microscopy.


Asunto(s)
Respiración de la Célula/fisiología , Ésteres/química , Fluoresceína/síntesis química , Membranas Mitocondriales/metabolismo , Fosforilación Oxidativa , Animales , Respiración de la Célula/efectos de los fármacos , Ésteres/metabolismo , Fluoresceína/química , Fluoresceína/farmacología , Liposomas/química , Liposomas/metabolismo , Lípidos de la Membrana/química , Lípidos de la Membrana/metabolismo , Potenciales de la Membrana/efectos de los fármacos , Mitocondrias Hepáticas/efectos de los fármacos , Mitocondrias Hepáticas/metabolismo , Membranas Mitocondriales/efectos de los fármacos , Permeabilidad/efectos de los fármacos , Protones , Ratas , Desacopladores/química , Desacopladores/metabolismo
16.
Pharmaceutics ; 16(1)2024 Jan 22.
Artículo en Inglés | MEDLINE | ID: mdl-38276518

RESUMEN

Antimicrobial peptides (AMPs) have recently attracted attention as promising antibacterial agents capable of acting against resistant bacterial strains. In this work, an approach was applied, consisting of the conjugation of a peptide related to the sequences of bactenecin 7 (Bac7) and oncocin (Onc112) with the alkyl(triphenyl)phosphonium (alkyl-TPP) fragment in order to improve the properties of the AMP and introduce new ones, expand the spectrum of antimicrobial activity, and reduce the inhibitory effect on the eukaryotic translation process. Triphenylphosphonium (TPP) derivatives of a decapeptide RRIRPRPPYL were synthesized. It was comprehensively studied how the modification of the AMP affected the properties of the new compounds. It was shown that while the reduction in the Bac7 length to 10 a.a. residues dramatically decreased the affinity to bacterial ribosomes, the modification of the peptide with alkyl-TPP moieties led to an increase in the affinity. New analogs with structures that combined a decapeptide related to Bac7 and Onc112-Bac(1-10, R/Y)-and TPP attached to the C-terminal amino acid residue via alkylamide linkers, inhibited translation in vitro and were found to be more selective inhibitors of bacterial translation compared with eukaryotic translation than Onc112 and Bac7. The TPP analogs of the decapeptide related to Bac7 and Onc112 suppressed the growth of both Gram-negative bacteria, similar to Onc112 and Bac7, and Gram-positive ones, similar to alkyl-TPP derivatives, and also acted against some resistant laboratory strains. Bac(1-10, R/Y)-C2-TPP, containing a short alkylamide linker between the decapeptide and TPP, was transferred into the E. coli cells via the SbmA transporter protein. TPP derivatives of the decapeptide Bac(1-10, R/Y) containing either a decylamide or ethylamide linker caused B. subtilis membrane depolarization, similar to alkyl-TPP. The Bac(1-10, R/Y)-C2-TPP analog was proven to be non-toxic for mammalian cells using the MTT test.

17.
Biochimie ; 204: 136-139, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36174793

RESUMEN

Mitoregulin (Mtln) is a recently identified 56 amino acid long mitochondrial peptide conserved in vertebrates. Mtln is known to enhance function of respiratory complex I, which is likely mediated by modulation of lipid composition. To address an influence of Mtln gene on the metabolism we created knockout mice deficient in Mtln gene. In line with accumulation of triglycerides observed earlier on a model of Mtln knockout cell lines, we observed Mtln KO mice to develop obesity on a high fat diet. An increased weight gain could be attributed to enhanced fat accumulation according to the magnetic resonance live imaging. In addition, Mtln KO mice demonstrate elevated serum triglycerides and other oxidation substrates accompanied by an exhaustion of tricarboxylic acids cycle intermediates, suggesting suboptimal oxidation of respiration substrates by mitochondria lacking Mtln.


Asunto(s)
Mitocondrias , Aumento de Peso , Ratones , Animales , Mitocondrias/metabolismo , Péptidos/metabolismo , Triglicéridos/metabolismo , Ratones Noqueados , Dieta Alta en Grasa/efectos adversos , Estrés Oxidativo , Metabolismo de los Lípidos
18.
J Phys Chem B ; 126(2): 412-422, 2022 01 20.
Artículo en Inglés | MEDLINE | ID: mdl-34994564

RESUMEN

The alkyltriphenylphosphonium (TPP) group is the most widely used vector targeted to mitochondria. Previously, the length of the alkyl linker was varied as well as structural modifications in the TPP phenyl rings to obtain the optimal therapeutic effect of a pharmacophore conjugated with a lipophilic cation. In the present work, we synthesized butyltriphenylphosphonium cations halogenated and methylated in phenyl rings (C4TPP-X) and measured electrical current through a planar lipid bilayer in the presence of C4TPP-X. The permeability of C4TPP-X varied in the range of 6 orders of magnitude and correlates well with the previously measured translocation rate constant for dodecyltriphenylphosphonium analogues. The partition coefficient of the butyltriphenylphosphonium analogues obtained by calculating the difference in the free energy of cation solvation in water and octane using quantum chemical methods correlates well with the permeability values. Using an ion-selective electrode, a lower degree of accumulation of analogues with halogenated phenyl groups was found on isolated mitochondria of rat liver, which is in agreement with their permeability decrease. Our results indicate the translocation of the butyltriphenylphosphonium cations across the hydrophobic membrane core as rate-limiting stage in the permeability process rather than their binding/release to/from the membrane.


Asunto(s)
Membrana Dobles de Lípidos , Compuestos Onio , Animales , Cationes/química , Membrana Dobles de Lípidos/química , Compuestos Onio/química , Compuestos Organofosforados , Permeabilidad , Ratas
19.
Bioelectrochemistry ; 145: 108081, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35131667

RESUMEN

A great variety of coumarin-related compounds, both natural and synthetic, being often brightly fluorescent, have shown themselves beneficial in medicine for both therapeutic and imaging purposes. Here, in search for effective uncouplers of oxidative phosphorylation, we synthesized a series of 7-hydroxycoumarin (umbelliferone, UB) derivatives combining rather high membrane affinity with the presence of a hydroxyl group deprotonable at physiological pH - alkyl esters of umbelliferone-4-acetic acid (UB-4 esters) differing in alkyl chain length. Addition of UB-4 esters to isolated rat liver mitochondria (RLM) resulted in their rapid depolarization, unexpectedly followed by membrane potential recovery on a minute time scale. According to TLC and HPLC data, incubation of RLM with UB-4 esters caused their hydrolysis, which led to disappearance of the uncoupling activity (recoupling). Both mitochondrial recoupling and hydrolysis of UB-4 esters were suppressed by inhibitors of mitochondrial aldehyde dehydrogenase (ALDH2), disulfiram and daidzin, thus pointing to the involvement of this enzyme in the recoupling of RLM incubated with UB-4 esters. The protonophoric mechanism of mitochondrial uncoupling by UB-4 esters was proved in experiments with artificial bilayer lipid membranes (BLM): these compounds induced proton-selective electrical current across planar BLM and caused dissipation of pH gradient on liposomes. UB-4 esters showed antibacterial activity against Bacillus subtilis, Staphylococcus aureus and Mycobacterium smegmatis.


Asunto(s)
Ésteres , Mitocondrias Hepáticas , Ácido Acético/farmacología , Aldehído Deshidrogenasa Mitocondrial , Animales , Ésteres/farmacología , Membrana Dobles de Lípidos/química , Ratas , Umbeliferonas/farmacología , Desacopladores/farmacología
20.
Biochimie ; 192: 63-71, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34592388

RESUMEN

The aromatic polyketide tetracenomycin X (TcmX) was recently found to be a potent inhibitor of protein synthesis; its binding site is located in a unique locus within the tunnel of the large ribosomal subunit. The distinct mode of action makes this relatively narrow class of aromatic polyketides promising for drug development in the quest to prevent the spread of drug-resistant pathogens. Here we report the isolation and structure elucidation of a novel natural tetracenomycin X congener - 6-hydroxytetraceonomycin X (6-OH-TcmX). In contrast to TcmX, 6-OH-TcmX exhibited lower antimicrobial and cytotoxic activity, but comparable in vitro protein synthesis inhibition ability. A survey on spectral properties of tetracenomycins revealed profound differences in both UV-absorption and fluorescence spectra between TcmX and 6-OH-TcmX, suggesting a significant influence of 6-hydroxylation on the tetracenomycin X chromophore. Nonetheless, characteristic spectral properties of tetracenomycins make them suitable candidates for semi-synthetic drug development (e.g., for targeted delivery, chemical biology, or cell imaging).


Asunto(s)
Amycolatopsis/química , Antibacterianos/química , Células A549 , Amycolatopsis/metabolismo , Antibacterianos/metabolismo , Antibacterianos/farmacología , Células HEK293 , Humanos , Células MCF-7 , Estructura Molecular , Naftacenos/química , Naftacenos/metabolismo , Naftacenos/farmacología , Resonancia Magnética Nuclear Biomolecular
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