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1.
J Exp Biol ; 226(20)2023 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-37767755

RESUMEN

Testing acclimation plasticity informs our understanding of organismal physiology and applies to conservation management amidst our rapidly changing climate. Although there is a wealth of research on the plasticity of thermal and hydric physiology in response to temperature acclimation, there is a comparative gap for research on acclimation to different hydric regimes, as well as the interaction between water and temperature. We sought to fill this gap by acclimating western fence lizards (Sceloporus occidentalis) to experimental climate conditions (crossed design of hot or cool, dry or humid) for 8 days, and measuring cutaneous evaporative water loss (CEWL), plasma osmolality, hematocrit and body mass before and after acclimation. CEWL changed plastically in response to the different climates, with lizards acclimated to hot humid conditions experiencing the greatest increase in CEWL. Change in CEWL among individuals was negatively related to treatment vapor pressure deficit and positively related to treatment water vapor pressure. Plasma osmolality, hematocrit and body mass all showed greater changes in response to temperature than to humidity or vapor pressure deficit. CEWL and plasma osmolality were positively related across treatment groups before acclimation and within treatment groups after acclimation, but the two variables showed different responses to acclimation, suggesting that they are interrelated but governed by different mechanisms. This study is among few that assess more than one metric of hydric physiology and that test the interactive effects of temperature and humidity. Such measurements will be essential for predictive models of activity and survival for animals under climate change.


Asunto(s)
Lagartos , Animales , Temperatura , Humedad , Lagartos/fisiología , Aclimatación/fisiología , Frío , Calor
2.
Evol Dev ; 20(1): 40-47, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29194953

RESUMEN

Reptile embryos have recently been observed moving within the egg in response to temperature, raising the exciting possibility that embryos might behaviorally thermoregulate analogous to adults. However, the conjecture that reptile embryos have ample opportunity and capacity to adaptively control their body temperature warrants further discussion. Using turtles as a model, we discuss the spatiotemporal constraints to movement in reptile embryos. We demonstrate that, as embryos grow, the internal egg space rapidly diminishes such that the temporal window for appreciable displacement is confined to stages that feature incomplete neuromuscular differentiation. During this time, muscles are insufficiently developed to actively and consistently control movement. These constraints are well illustrated by the Chinese softshelled turtle (Pelodiscus sinensis), the first reptile reported to behaviorally thermoregulate. Furthermore, sporadic embryo activity peaks after the temperature-sensitive period in species with temperature-dependent sex determination, thus nullifying the opportunity for embryos to exhibit control over this important phenotype. These embryonic constraints add to previously-identified environmental constraints on behavioral thermoregulation by reptile embryos. We discuss alternative hypotheses to explain previously reported patterns of behavioral thermoregulation. Based on a holistic consideration of embryonic limitations, we conclude that reptile embryos are generally unable to adaptively behaviorally thermoregulate within the egg.


Asunto(s)
Regulación de la Temperatura Corporal , Embrión no Mamífero/fisiología , Óvulo/fisiología , Reptiles/embriología , Reptiles/fisiología , Animales , Conducta Animal , Embrión no Mamífero/citología , Desarrollo Embrionario , Óvulo/citología , Temperatura
3.
J Therm Biol ; 73: 71-79, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29549993

RESUMEN

Understanding the impacts of anthropogenic climate change requires knowing how animals avoid heat stress, and the consequences of failing to do so. Animals primarily use behavior to avoid overheating, but biologists' means for measuring and interpreting behavioral signs of stress require more development. Herein, we develop the measurement of behavioral thermal tolerance using four species of lizards. First, we adapt the voluntary thermal maximum concept (VTM) to facilitate its measurement, interpretation, and comparison across species. Second, we evaluate the sensitivity of the VTM to diverse measurement options (warming rate, time of day, etc) across four species with highly different life histories. Finally, we clarify the interpretation of VTM in two ways. First, we show the effects of exposure to the VTM on panting behavior, mass loss, and locomotor function loss of two species. Second, we compared the VTM with the preferred body temperatures (PBT) and critical thermal maximum (CTMAX) intraspecifically. We found that the VTM can be consistently estimated through different methods and methodological options, only very slow warming rates affected its estimates in one species. Exposure to the VTM caused panting between 5 and 50 min and induced exceptionally high mass loss rates. Loss of locomotion function started after 205 min. Further, the VTM did not show intraspecific correlations with the PBT and CTMAX. Our study suggests the VTM is a robust and flexible measure of thermal tolerance and highlights the need for multispecies evaluations of thermal indices. The lack of correlation between the VTM, the PBT and CTMAX suggests the VTM may evolve relatively free between the other parameters. We make reccommendations for understanding and using the VTM in studies of ecology, evolution, and conservation.


Asunto(s)
Aclimatación , Conducta Animal , Evolución Biológica , Regulación de la Temperatura Corporal , Ecología , Animales , Especies en Peligro de Extinción , Femenino , Respuesta al Choque Térmico , Lagartos/fisiología , Masculino , Temperatura
4.
Glob Chang Biol ; 23(3): 1075-1084, 2017 03.
Artículo en Inglés | MEDLINE | ID: mdl-27558698

RESUMEN

Although observations suggest the potential for phenotypic plasticity to allow adaptive responses to climate change, few experiments have assessed that potential. Modeling suggests that Sceloporus tristichus lizards will need increased nest depth, shade cover, or embryonic thermal tolerance to avoid reproductive failure resulting from climate change. To test for such plasticity, we experimentally examined how maternal temperatures affect nesting behavior and embryonic thermal sensitivity. The temperature regime that females experienced while gravid did not affect nesting behavior, but warmer temperatures at the time of nesting reduced nest depth. Additionally, embryos from heat-stressed mothers displayed increased sensitivity to high-temperature exposure. Simulations suggest that critically low temperatures, rather than high temperatures, historically limit development of our study population. Thus, the plasticity needed to buffer this population has not been under selection. Plasticity will likely fail to compensate for ongoing climate change when such change results in novel stressors.


Asunto(s)
Cambio Climático , Lagartos/fisiología , Comportamiento de Nidificación , Adaptación Fisiológica , Animales , Clima , Femenino , Temperatura
5.
J Anim Ecol ; 86(6): 1510-1522, 2017 10.
Artículo en Inglés | MEDLINE | ID: mdl-28796906

RESUMEN

The mechanisms that mediate the interaction between the thermal environment and species ranges are generally uncertain. Thermal environments may directly restrict species when environments exceed tolerance limits (i.e. the fundamental niche). However, thermal environments might also differentially affect relative performance among species prior to fundamental tolerances being met (i.e. the realized niche). We examined stress physiology (plasma glucose and corticosterone), mitochondrial performance and the muscle metabolome of congeneric lizards that naturally partition the thermal niche, Elgaria multicarinata (southern alligator lizards; SALs) and Elgaria coerulea (northern alligator lizards; NALs), in response to a thermal challenge to quantify variation in physiological performance and tolerance. Both NAL and SAL displayed physiological stress in response to high temperature, but neither showed signs of irreversible damage. NAL displayed a higher baseline mitochondrial respiration rate than SAL. Moreover, NAL substantially adjusted their physiology in response to thermal challenge, whereas SAL did not. For example, the metabolite profile of NAL shifted with changes in key energetic molecules, whereas these were unaffected in SAL. Our results indicate that near-critical high temperatures should incur greater energetic cost in NAL than SAL via an elevated metabolic rate and changes to the metabolome. Thus, SAL displace NAL in warm environments that are within NAL's fundamental thermal niche, but relatively costly. Our results suggest that subcritical thermal events can contribute to biogeographic patterns via physiological differences that alter the relative costs of living in warm or cool environments.


Asunto(s)
Aclimatación , Frío , Calor , Lagartos/fisiología , Animales , Especificidad de la Especie , Estrés Fisiológico
6.
Am Nat ; 188(1): E13-27, 2016 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-27322129

RESUMEN

Historically, egg-bound reptile embryos were thought to passively thermoconform to the nest environment. However, recent observations of thermal taxis by embryos of multiple reptile species have led to the widely discussed hypothesis that embryos behaviorally thermoregulate. Because temperature affects development, such thermoregulation could allow embryos to control their fate far more than historically assumed. We assessed the opportunity for embryos to behaviorally thermoregulate in nature by examining thermal gradients within natural nests and eggs of the common snapping turtle (Chelydra serpentina; which displays embryonic thermal taxis) and by simulating thermal gradients within nests across a range of nest depths, egg sizes, and soil types. We observed little spatial thermal variation within nests, and thermal gradients were poorly transferred to eggs. Furthermore, thermal gradients sufficiently large and constant for behavioral thermoregulation were not predicted to occur in our simulations. Gradients of biologically relevant magnitude have limited global occurrence and reverse direction twice daily when they do exist, which is substantially faster than embryos can shift position within the egg. Our results imply that reptile embryos will rarely, if ever, have the opportunity to behaviorally thermoregulate by moving within the egg. We suggest that embryonic thermal taxis instead represents a play behavior, which may be adaptive or selectively neutral, and results from the mechanisms for behavioral thermoregulation in free-living stages coming online prior to hatching.


Asunto(s)
Regulación de la Temperatura Corporal , Tortugas/embriología , Animales , Embrión no Mamífero/fisiología , Movimiento , Reptiles/embriología , Reptiles/fisiología , Temperatura , Tortugas/fisiología
7.
J Exp Biol ; 219(Pt 18): 2944-2954, 2016 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-27436139

RESUMEN

Extreme temperatures constrain organismal physiology and impose both acute and chronic effects. Additionally, temperature-induced hormone-mediated stress response pathways and energetic trade-offs are important drivers of life-history variation. This study employs an integrative approach to quantify acute physiological responses to high temperatures in divergent life-history ecotypes of the western terrestrial garter snake (Thamnophis elegans). Using wild-caught animals, we measured oxygen consumption rate and physiological markers of hormonal stress response, energy availability and anaerobic respiration in blood plasma across five ecologically relevant temperatures (24, 28, 32, 35 and 38°C; 3 h exposure). Corticosterone, insulin and glucose concentrations all increased with temperature, but with different thermal response curves, suggesting that high temperatures differently affect energy-regulation pathways. Additionally, oxygen consumption rate increased without plateau and lactate concentration did not increase with temperature, challenging the recent hypothesis that oxygen limitation sets upper thermal tolerance limits. Finally, animals had similar physiological thermal responses to high-temperature exposure regardless of genetic background, suggesting that local adaptation has not resulted in fixed differences between ecotypes. Together, these results identify some of the mechanisms by which higher temperatures alter hormonal-mediated energy balance in reptiles and potential limits to the flexibility of this response.

8.
Biol Lett ; 11(4): 20150113, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25926695

RESUMEN

The mechanisms that set the thermal limits to life remain uncertain. Classically, researchers thought that heating kills by disrupting the structures of proteins or membranes, but an alternative hypothesis focuses on the demand for oxygen relative to its supply. We evaluated this alternative hypothesis by comparing the lethal temperature for lizard embryos developing at oxygen concentrations of 10-30%. Embryos exposed to normoxia and hyperoxia survived to higher temperatures than those exposed to hypoxia, suggesting that oxygen limitation sets the thermal maximum. As all animals pass through an embryonic stage where respiratory and cardiovascular systems must develop, oxygen limitation may limit the thermal niches of terrestrial animals as well as aquatic ones.


Asunto(s)
Embrión no Mamífero/fisiología , Calor/efectos adversos , Lagartos/fisiología , Oxígeno/metabolismo , Aclimatación/fisiología , Animales , Lagartos/embriología , Consumo de Oxígeno
9.
Gen Comp Endocrinol ; 206: 184-92, 2014 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-25019656

RESUMEN

In response to conditions that threaten homeostasis and/or life, vertebrates generally increase production of glucocorticoid hormones, such as corticosterone (CORT), which induces an emergency physiological state referred to as the stress response. Given that extreme temperatures pose a threat to performance and survival, glucocorticoid upregulation might be an important component of a vertebrate ectotherm's response to extreme thermal conditions. To address this hypothesis, we experimentally examined the effects of body temperature (10, 20, 28, and 35°C; 5-h exposure) on CORT in two congeneric species of lizard naturally exposed to different thermal environments, northern and southern alligator lizards (Elgaria coerulea and Elgaria multicarinata, respectively). In both species, CORT was similarly elevated at medium and high temperatures (28 and 35°C, respectively), but CORT was only elevated at low temperatures (10°C) in southern alligator lizards. We also examined CORT before and after adrenocorticotrophic hormone (ACTH) challenge. In both species, ACTH induced higher CORT levels than any temperature, suggesting that these animals could respond to further stressors at all experimental temperatures. Finally, we compared our laboratory results to measurements of CORT in field-active southern alligator lizards. Plasma CORT concentrations from our laboratory experiment had the same mean and less variance than the field lizards, suggesting that our laboratory lizards displayed CORT within natural levels. Our results demonstrate that body temperature directly affects CORT in alligator lizards. Moreover, the CORT response of these lizards appears to be adapted to their respective thermal environments. Species-specific differences in the thermal CORT response might be common in vertebrate ectotherms and have implications for species' biogeography and responses to climate change.


Asunto(s)
Caimanes y Cocodrilos/fisiología , Cambio Climático , Corticosterona/sangre , Temperatura , Hormona Adrenocorticotrópica/farmacología , Caimanes y Cocodrilos/clasificación , Animales , Ambiente , Femenino , Hormonas/farmacología , Masculino , Especificidad de la Especie
10.
Conserv Physiol ; 12(1): coae019, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38715929

RESUMEN

Animals can respond to extreme climates by behaviourally avoiding it or by physiologically coping with it. We understand behavioural and physiological thermoregulation, but water balance has largely been neglected. Climate change includes both global warming and changes in precipitation regimes, so improving our understanding of organismal water balance is increasingly urgent. We assessed the hydric physiology of US federally endangered blunt-nosed leopard lizards (Gambelia sila) by measuring cutaneous evaporative water loss (CEWL), plasma osmolality and body condition. Measurements were taken throughout their active season, the short period of year when these lizards can be found aboveground. Compared to a more mesic species, G. sila had low CEWL which is potentially desert-adaptive, and high plasma osmolality that could be indicative of dehydration. We hypothesized that throughout the G. sila active season, as their habitat got hotter and drier, G. sila would become more dehydrated and watertight. Instead, CEWL and plasma osmolality showed minimal change for females and non-linear change for males, which we hypothesize is connected to sex-specific reproductive behaviours and changes in food availability. We also measured thermoregulation and microhabitat use, expecting that more dehydrated lizards would have lower body temperature, poorer thermoregulatory accuracy and spend less time aboveground. However, we found no effect of CEWL, plasma osmolality or body condition on these thermal and behavioural metrics. Finally, G. sila spends considerable time belowground in burrows, and burrows may serve not only as essential thermal refugia but also hydric refugia.

11.
Am Nat ; 181(5): 637-48, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23594547

RESUMEN

By altering phenology, organisms have the potential to match life-history events with suitable environmental conditions. Because of this, phenological plasticity has been proposed as a mechanism whereby populations might buffer themselves from climate change. We examine the potential buffering power of advancing one aspect of phenology, nesting date, on sex ratio in painted turtles (Chrysemys picta), a species with temperature-dependent sex determination. We developed a modified constant temperature equivalent model that accounts for the effect of the interaction among climate change, oviposition date, and seasonal thermal pattern on temperature during sexual differentiation and thus on offspring sex ratio. Our results suggest that females will not be able to buffer their progeny from the negative consequences of climate change by adjusting nesting date alone. Not only are offspring sex ratios predicted to become 100% female, but our model suggests that many nests will fail. Because the seasonal thermal trends that we consider are experienced by most temperate species, our result that adjusting spring phenology alone will be insufficient to counter the effects of directional climate change may be broadly applicable.


Asunto(s)
Cambio Climático , Reproducción , Temperatura , Tortugas/fisiología , Animales , Femenino , Masculino , Modelos Biológicos , Comportamiento de Nidificación , Estaciones del Año , Procesos de Determinación del Sexo , Razón de Masculinidad , Factores de Tiempo , Tortugas/crecimiento & desarrollo
12.
J Exp Zool A Ecol Integr Physiol ; 337(7): 739-745, 2022 08.
Artículo en Inglés | MEDLINE | ID: mdl-35652426

RESUMEN

The climate crisis necessitates predicting how organisms respond to changing environments, but this requires understanding the mechanisms underlying thermal tolerance. The Hierarchical Mechanisms of Thermal Limitation (HMTL) hypothesis proposes that respiratory capacity and marginal stability of proteins and membranes interact hierarchically to determine thermal performance and limits. An untested prediction of the HMTL hypothesis is that behavioral anapyrexia (i.e., reduced body temperature in hypoxia) is exacerbated when metabolic demand is high. We tested this prediction by manipulating western fence lizards' (Sceloporus occidentalis) metabolic demand and oxygen environment, then measuring selected body temperatures. Lizards with elevated metabolic demand selected lower body temperatures at higher oxygen concentrations than resting lizards, but this occurred only at oxygen concentrations <12% O2 , suggesting thermal limits are unaffected by naturally-occurring oxygen variation. Given our results and the ubiquity of behavioral anapyrexia, the HMTL hypothesis may generally explain how oxygen and temperature interactively affect reptile performance.


Asunto(s)
Lagartos , Animales , Regulación de la Temperatura Corporal/fisiología , Clima , Lagartos/fisiología , Oxígeno/metabolismo , Temperatura
13.
Artículo en Inglés | MEDLINE | ID: mdl-21820075

RESUMEN

Moisture availability is critical for successful embryonic development in many organisms. In most oviparous reptiles, for example, water exchange between eggs and the surrounding environment can have substantial fitness consequences, but regulation of this process is unclear. Here, we evaluate whether water uptake by eggs of the lizard Anolis sagrei is regulated by the presence of a live embryo or is a passive hydraulic response to substrate moisture conditions. Many eggs laid in our captive colony were infertile or contained embryos that died during early stages of development, yet these 'dead' eggs continued to gain mass similar to that of 'live' eggs at least during the first half of incubation. Our results suggest that water uptake by eggs is largely a passive hydraulic process during the first half of incubation, but active regulation by embryos may be necessary during latter stages. Maternal effects (e.g., deposition of salts into yolk) could influence this passive process during early incubation.


Asunto(s)
Embrión no Mamífero/fisiología , Lagartos/embriología , Óvulo/fisiología , Agua/fisiología , Animales , Embrión no Mamífero/metabolismo , Desarrollo Embrionario/fisiología , Ambiente , Femenino , Lagartos/metabolismo , Lagartos/fisiología , Oviparidad , Óvulo/metabolismo
14.
J Exp Zool A Ecol Integr Physiol ; 335(1): 5-12, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33544981

RESUMEN

Two themes emerging from the special issue "Beyond CTMAX and CTMIN : Advances in Studying the Thermal Limits of Reptiles and Amphibians" are: (1) the need to identify mechanisms that determine the shape of thermal performance curves and (2) how these curves can be best used predictively.


Asunto(s)
Anfibios/fisiología , Reptiles/fisiología , Temperatura , Adaptación Fisiológica , Animales , Evolución Biológica , Regulación de la Temperatura Corporal , Conservación de los Recursos Naturales , Femenino , Estadios del Ciclo de Vida , Masculino
15.
J Exp Zool A Ecol Integr Physiol ; 335(1): 86-95, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32483940

RESUMEN

Crested geckos (Correlophus ciliatus, formerly Rhacodactylus ciliatus) were rediscovered in New Caledonia 25 years ago and despite being common in the pet trade, there is no published information on their physiology. We measured thermoregulation (preferred body temperature, thermal set-point range, and voluntary limits) and performance (thermal performance curves [TPC] for 25 cm sprint speed and 1 m running speed) of adult and juvenile crested geckos in the laboratory to describe their thermal tolerances, differences among life stages, correlations between behavior and performance, and correlations with natural temperatures. Despite lacking special lighting or heating requirements in captivity, crested geckos displayed typical thermal biology for a lizard with no difference among life stages. They thermoregulated to a narrow set-point range (TSET , 24-28°C), that broadly overlaps natural air temperatures in New Caledonia, during activity. Somewhat surprisingly, the optimal temperature for performance (TOPT , 32°C) was substantially above preferred body temperatures and approximated the average maximum temperature voluntarily experienced (VTMAX , 33°C). Preferred body temperatures, by contrast, corresponded to the lower threshold temperature (Td ) where the TPC deviated from exponential, which we suggest is the temperature where performance is optimized after accounting for the costs of metabolic demand and overheating risk. Our results demonstrate that despite their lack of specific requirements when housed in human dwellings, crested geckos actively thermoregulate to temperatures that facilitate performance, and have thermal biology typical of other nocturnal or shade-dwelling species. Additionally, crested geckos appear at little risk of direct climate change-induced decline because increased temperatures should allow increased activity.


Asunto(s)
Evolución Biológica , Regulación de la Temperatura Corporal/genética , Lagartos/fisiología , Animales , Tamaño Corporal , Regulación de la Temperatura Corporal/fisiología , Femenino , Lagartos/genética , Masculino
16.
Front Physiol ; 12: 738992, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34803731

RESUMEN

Populations of insects can differ in how sensitive their development, growth, and performance are to environmental conditions such as temperature and daylength. The environmental sensitivity of development can alter phenology (seasonal timing) and ecology. Warming accelerates development of most populations. However, high-elevation and season-limited populations can exhibit developmental plasticity to either advance or prolong development depending on conditions. We examine how diurnal temperature variation and daylength interact to shape growth, development, and performance of several populations of the montane grasshopper, Melanoplus boulderensis, along an elevation gradient. We then compare these experimental results to observed patterns of development in the field. Although populations exhibited similar thermal sensitivities of development under long-day conditions, development of high-elevation populations was more sensitive to temperature under short-day conditions. This developmental plasticity resulted in rapid development of high elevation populations in short-day conditions with high temperature variability, consistent with their observed capacity for rapid development in the field when conditions are permissive early in the season. Notably, accelerated development generally did not decrease body size or alter body shape. Developmental conditions did not strongly influence thermal tolerance but altered the temperature dependence of performance in difficult-to-predict ways. In sum, the high-elevation and season-limited populations exhibited developmental plasticity that enables advancing or prolonging development consistent with field phenology. Our results suggest these patterns are driven by the thermal sensitivity of development increasing when days are short early in the season compared to when days are long later in the season. Developmental plasticity will shape phenological responses to climate change with potential implications for community and ecosystem structure.

17.
J Exp Zool A Ecol Integr Physiol ; 335(1): 13-44, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32638552

RESUMEN

Research on the thermal ecology and physiology of free-living organisms is accelerating as scientists and managers recognize the urgency of the global biodiversity crisis brought on by climate change. As ectotherms, temperature fundamentally affects most aspects of the lives of amphibians and reptiles, making them excellent models for studying how animals are impacted by changing temperatures. As research on this group of organisms accelerates, it is essential to maintain consistent and optimal methodology so that results can be compared across groups and over time. This review addresses the utility of reptiles and amphibians as model organisms for thermal studies by reviewing the best practices for research on their thermal ecology and physiology, and by highlighting key studies that have advanced the field with new and improved methods. We end by presenting several areas where reptiles and amphibians show great promise for further advancing our understanding of how temperature relations between organisms and their environments are impacted by global climate change.


Asunto(s)
Anfibios/fisiología , Temperatura Corporal/fisiología , Ecosistema , Reptiles/fisiología , Anfibios/embriología , Anfibios/crecimiento & desarrollo , Animales , Embrión no Mamífero/fisiología , Monitoreo Fisiológico , Reptiles/embriología , Reptiles/crecimiento & desarrollo
18.
Gigascience ; 10(10)2021 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-34599334

RESUMEN

BACKGROUND: High-quality genomic resources facilitate investigations into behavioral ecology, morphological and physiological adaptations, and the evolution of genomic architecture. Lizards in the genus Sceloporus have a long history as important ecological, evolutionary, and physiological models, making them a valuable target for the development of genomic resources. FINDINGS: We present a high-quality chromosome-level reference genome assembly, SceUnd1.0 (using 10X Genomics Chromium, HiC, and Pacific Biosciences data), and tissue/developmental stage transcriptomes for the eastern fence lizard, Sceloporus undulatus. We performed synteny analysis with other snake and lizard assemblies to identify broad patterns of chromosome evolution including the fusion of micro- and macrochromosomes. We also used this new assembly to provide improved reference-based genome assemblies for 34 additional Sceloporus species. Finally, we used RNAseq and whole-genome resequencing data to compare 3 assemblies, each representing an increased level of cost and effort: Supernova Assembly with data from 10X Genomics Chromium, HiRise Assembly that added data from HiC, and PBJelly Assembly that added data from Pacific Biosciences sequencing. We found that the Supernova Assembly contained the full genome and was a suitable reference for RNAseq and single-nucleotide polymorphism calling, but the chromosome-level scaffolds provided by the addition of HiC data allowed synteny and whole-genome association mapping analyses. The subsequent addition of PacBio data doubled the contig N50 but provided negligible gains in scaffold length. CONCLUSIONS: These new genomic resources provide valuable tools for advanced molecular analysis of an organism that has become a model in physiology and evolutionary ecology.


Asunto(s)
Lagartos , Animales , Cromosomas/genética , Genoma , Genómica , Lagartos/genética , Sintenía
19.
Integr Comp Biol ; 60(1): 70-78, 2020 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-32058560

RESUMEN

The stress phenotype is multivariate. Recent advances have broadened our understanding beyond characterizing the stress response in a single dimension. Simultaneously, the toolbox available to ecophysiologists has expanded greatly in recent years, allowing the measurement of multiple biomarkers from an individual at a single point in time. Yet these advances-in our conceptual understanding and available methodologies-have not yet been combined in a unifying multivariate statistical framework. Here, we offer a brief review of the multivariate stress phenotype and describe a general statistical approach for analysis using nonparametric multivariate analysis of variance with residual randomization in permutation procedures (RRPP) implemented using the "RRPP" package in R. We also provide an example illustrating the novel insights that can be gained from a holistic multivariate approach to stress and provide a tutorial for how we analyzed these data, including annotated R code and a guide to interpretation of outputs (Online Appendix 1). We hope that this statistical methodology will provide a quantitative framework facilitating the unification of our theoretical understanding and empirical observations into a quantitative, multivariate theory of stress.


Asunto(s)
Ecología/métodos , Fenotipo , Fisiología/métodos , Estrés Fisiológico , Modelos Estadísticos , Análisis Multivariante
20.
Ecology ; 90(1): 17-22, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19294908

RESUMEN

Species in which ambient temperatures directly determine offspring sex may be at particular risk as global climates change. Whether or not climate change affects sex ratio depends upon the effectiveness of buffering mechanisms that link ambient regimes to actual nest temperatures. For example, females may simply lay nests earlier in the season, or in more shaded areas, such that incubation thermal regimes are unchanged despite massive ambient fluctuation. Based on eight years of monitoring nests over a 10-year period in the field at an alpine site in southeastern Australia, we show that, even though lizards (Bassiana duperreyi, Scincidae) have adjusted both nest depth and seasonal timing of oviposition in response to rising ambient temperatures, they have been unable to compensate entirely for climate change. That inability stems from the fact that the seasonal progression of soil temperatures, and thus, the degree to which thermal regimes at the time of laying predict subsequent conditions during incubation, also has shifted with climate change. As a result, mean incubation temperatures in natural nests now have crossed the thermal threshold at which incubation temperature directly affects offspring sex in this population.


Asunto(s)
Efecto Invernadero , Lagartos/fisiología , Comportamiento de Nidificación/fisiología , Animales , Australia , Femenino , Masculino , Oviposición , Estaciones del Año , Factores de Tiempo
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