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1.
Biosci Biotechnol Biochem ; 86(5): 681-690, 2022 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-35150230

RESUMEN

We identified a novel flavoprotein-cytochrome c complex d-gluconate dehydrogenase (GADH) encoded by gndXYZ of Gluconobacter oxydans NBRC 3293, which is phylogenetically distinct from previously reported GADHs encoded by gndFGH and gndSLC of Gluconobacter spp. To analyze the biochemical properties of respective GADHs, Gluconobacter japonicus NBRC 3271 mutant strain lacking membranous d-gluconate dehydrogenase activity was constructed. All GADHs (GndFGH, GndSLC, and GndXYZ) were successfully overexpressed in the constructed strain. The optimal pH and KM value at that pH of GndFGH, GndSLC, and GndXYZ were 5, 6, and 4, and 8.82 ± 1.15, 22.9 ± 5.0, and 11.3 ± 1.5 m m, respectively. When the mutants overexpressing respective GADHs were cultured in d-glucose-containing medium, all of them produced 2-keto-d-gluconate, revealing that GndXYZ converts d-gluconate to 2-keto-d-gluconate as well as other GADHs. Among the recombinants, the gndXYZ-overexpressing strain accumulated the highest level of 2-keto-d-gluconate, suggesting its potential for 2-keto-d-gluconate production.


Asunto(s)
Gluconobacter oxydans , Gluconobacter , Gluconatos/química , Gluconobacter/genética , Gluconobacter oxydans/genética , Oxidorreductasas
2.
Biosci Biotechnol Biochem ; 85(3): 722-727, 2021 Feb 24.
Artículo en Inglés | MEDLINE | ID: mdl-33624784

RESUMEN

There are only a few combinations of antifungal drugs with known resistance marker genes in the Aspergillus species; therefore, the transformation of their wild-type strains is limited. In this study, to develop the novel dominant selectable marker for itraconazole, a fungal cell membrane synthesis inhibitor, we focused on Aspergillus luchuensis cyp51A (Alcyp51A), which encodes a 14-α-sterol demethylase related to the steroid synthesis pathway. We found that the G52R mutation in AlCyp51A and the replacement of the native promoter with a high-expression promoter contributed to itraconazole resistance in Aspergillus oryzae, designated as itraconazole resistant gene (itrA). The random integration in the A. luchuensis genome of the itrA marker cassette gene also allowed for transformation using itraconazole. Therefore, we succeed in developing a novel itraconazole resistance marker as a dominant selectable marker for transformation in A. oryzae and A. luchuensis.


Asunto(s)
Antifúngicos/farmacología , Aspergillus oryzae/efectos de los fármacos , Aspergillus/efectos de los fármacos , Farmacorresistencia Fúngica/genética , Marcadores Genéticos , Itraconazol/farmacología , Aspergillus/genética , Aspergillus oryzae/genética , Genes Fúngicos
3.
Appl Environ Microbiol ; 84(10)2018 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-29549098

RESUMEN

Thermotolerant microorganisms are beneficial to the fermentation industry because they reduce the need for cooling and offer other operational advantages. Previously, we obtained a thermally adapted Gluconobacter frateurii strain by experimental evolution. In the present study, we found only a single G insertion in the adapted strain, which causes a frameshift in a gene encoding a putative drug transporter. A mutant derivative strain with the single G insertion in the transporter gene (Wild-G) was constructed from the wild-type strain and showed increased thermotolerance. We found that the thermotolerant strains accumulated substantial intracellular trehalose and manifested a defect in sorbose assimilation, suggesting that the transporter is partly involved in trehalose efflux and sorbose uptake and that the defect in the transporter can improve thermotolerance. The ΔotsAB strain, constructed by elimination of the trehalose synthesis gene in the wild type, showed no trehalose production but, unexpectedly, much better growth than the adapted strain at high temperatures. The ΔotsAB mutant produced more acetate as the final metabolite than the wild-type strain did. We hypothesized that trehalose does not contribute to thermotolerance directly; rather, a metabolic change including increased carbon flux to the pentose phosphate pathway may be the key factor. The NADPH/NADP+ ratio was higher in strain Wild-G, and much higher in the ΔotsAB strain, than in the wild-type strain. Levels of reactive oxygen species (ROS) were lower in the thermotolerant strains. We propose that the defect of the transporter causes the metabolic flux to generate more NADPH, which may enhance thermotolerance in G. frateuriiIMPORTANCE The biorefinery industry has to ensure that microorganisms are robust and retain their viability and function at high temperatures. Here we show that Gluconobacterfrateurii, an industrially important member of the acetic acid bacteria, exhibited enhanced thermotolerance through the reduction of trehalose excretion after thermal adaptation. Although intracellular trehalose may play a key role in thermotolerance, the molecular mechanisms of action of trehalose in thermotolerance are a matter of debate. Our mutated strain that was defective in trehalose synthase genes, producing no trehalose but a larger amount of acetic acid as the end metabolite instead, unexpectedly showed higher thermotolerance than the wild type. Our adapted and mutated thermotolerant strains showed increased NADPH/NADP+ ratios and reductions in ROS levels. We concluded that in G. frateurii, trehalose does not contribute to thermotolerance directly; rather, the metabolic change increases the NADPH/NADP+ ratio to enhance thermotolerance.


Asunto(s)
Proteínas Bacterianas/genética , Gluconobacter/genética , Gluconobacter/metabolismo , Mutagénesis Insercional , NADP/metabolismo , Ácido Acético/metabolismo , Proteínas Bacterianas/metabolismo , Calor , Mutagénesis Sitio-Dirigida , Fenotipo , Sorbosa/metabolismo , Termotolerancia , Trehalosa/metabolismo
4.
Protein Expr Purif ; 145: 100-107, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29366965

RESUMEN

Gluconobacter oxydans produces 3-dehydroquinate by oxidation of quinate through a reaction catalyzed by the quinate dehydrogenase (QDH), membrane-bound, pyrroloquinoline quinone (PQQ)-dependent dehydrogenase. We previously reported the nucleotide and deduced amino acid sequence of QDH and constructed a heterologous expression system of QDH in Pseudomonas sp. (A.S. Vangnai, W. Promden, W. De-Eknamkul, K. Matsushita, H. Toyama, Biochemistry (Moscow) 75:452-459, 2010). Through this study, we aim to update the sequences of QDH and improve the heterologous expression of QDH in Gluconobacter strains using a broad-host-range plasmid. Expression of QDH using a plasmid containing a long 5'-UTR was higher than that using a plasmid with a short 5'-UTR. In addition, the usage of the putative promoter region of the membrane-bound, alcohol dehydrogenase (ADH) of Gluconobacter resulted in higher expression levels compared to the usage of the lacZ promoter. Base substitution experiments allowed to identify the correct TTG initiation codon between two possibilities, and the result of these experiments were consistent with the N-terminal amino acid sequence of the expressed QDH. However, change of the TTG codon to ATG did not increase QDH expression. Therefore, the optimal plasmid for QDH expression included the structural gene with a long 5'-UTR and the ADH promoter. Cell membrane of the recombinant Gluconobacter strain presented approximately 10-times higher specific QDH activity than that observed in the wild-type strain.


Asunto(s)
Oxidorreductasas de Alcohol/genética , Regulación Bacteriana de la Expresión Génica , Gluconobacter oxydans/enzimología , Proteínas Bacterianas/genética , Clonación Molecular , Escherichia coli/genética , Expresión Génica , Gluconobacter oxydans/genética , Proteínas Recombinantes
5.
Biochim Biophys Acta ; 1837(10): 1810-20, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24862920

RESUMEN

The bacterial aerobic respiratory chain has a terminal oxidase of the heme-copper oxidase superfamily, comprised of cytochrome c oxidase (COX) and ubiquinol oxidase (UOX); UOX evolved from COX. Acetobacter pasteurianus, an α-Proteobacterial acetic acid bacterium (AAB), produces UOX but not COX, although it has a partial COX gene cluster, ctaBD and ctaA, in addition to the UOX operon cyaBACD. We expressed ctaB and ctaA genes of A. pasteurianus in Escherichia coli and demonstrated their function as heme O and heme A synthases. We also found that the absence of ctaD function is likely due to accumulated mutations. These COX genes are closely related to other α-Proteobacterial COX proteins. However, the UOX operons of AAB are closely related to those of the ß/γ-Proteobacteria (γ-type UOX), distinct from the α/ß-Proteobacterial proteins (α-type UOX), but different from the other γ-type UOX proteins by the absence of the cyoE heme O synthase. Thus, we suggest that A. pasteurianus has a functional γ-type UOX but has lost the COX genes, with the exception of ctaB and ctaA, which supply the heme O and A moieties for UOX. Our results suggest that, in AAB, COX was replaced by ß/γ-Proteobacterial UOX via horizontal gene transfer, while the COX genes, except for the heme O/A synthase genes, were lost.


Asunto(s)
Acetobacter/metabolismo , Evolución Biológica , Complejo IV de Transporte de Electrones/metabolismo , Oxidorreductasas/metabolismo , Acetobacter/enzimología , Acetobacter/genética , Escherichia coli/genética , Genes Bacterianos , Filogenia
6.
Appl Microbiol Biotechnol ; 98(7): 2955-63, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24352733

RESUMEN

Shikimate and 3-dehydroshikimate are useful chemical intermediates for the synthesis of various compounds, including the antiviral drug oseltamivir. Here, we show an almost stoichiometric biotransformation of quinate to 3-dehydroshikimate by an engineered Gluconobacter oxydans strain. Even under pH control, 3-dehydroshikimate was barely detected during the growth of the wild-type G. oxydans strain NBRC3244 on the medium containing quinate, suggesting that the activity of 3-dehydroquinate dehydratase (DHQase) is the rate-limiting step. To identify the gene encoding G. oxydans DHQase, we overexpressed the gox0437 gene from the G. oxydans strain ATCC621H, which is homologous to the aroQ gene for type II DHQase, in Escherichia coli and detected high DHQase activity in cell-free extracts. We identified the aroQ gene in a draft genome sequence of G. oxydans NBRC3244 and constructed G. oxydans NBRC3244 strains harboring plasmids containing aroQ and different types of promoters. All recombinant G. oxydans strains produced a significant amount of 3-dehydroshikimate from quinate, and differences between promoters affected 3-dehydroshikimate production levels with little statistical significance. By using the recombinant NBRC3244 strain harboring aroQ driven by the lac promoter, a sequential pH adjustment for each step of the biotransformation was determined to be crucial because 3-dehydroshikimate production was enhanced. Under optimal conditions with a shift in pH, the strain could efficiently produce a nearly equimolar amount of 3-dehydroshikimate from quinate. In the present study, one of the important steps to convert quinate to shikimate by fermenting G. oxydans cells was investigated.


Asunto(s)
Expresión Génica , Gluconobacter oxydans/enzimología , Gluconobacter oxydans/metabolismo , Hidroliasas/biosíntesis , Ingeniería Metabólica/métodos , Ácido Quínico/metabolismo , Ácido Shikímico/análogos & derivados , Biotransformación , Medios de Cultivo/química , Dosificación de Gen , Gluconobacter oxydans/genética , Hidroliasas/genética , Concentración de Iones de Hidrógeno , Plásmidos , Regiones Promotoras Genéticas , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Ácido Shikímico/metabolismo
7.
Biosci Biotechnol Biochem ; 78(3): 533-41, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25036846

RESUMEN

From the pellicle formed on top of brewing coconut water vinegar in Sri Lanka, three Acetobacter strains (SL13E-2, SL13E-3, and SL13E-4) that grow at 42 °C and four Gluconobacter strains (SL13-5, SL13-6, SL13-7, and SL13-8) grow at 37 °C were identified as Acetobacter pasteurianus and Gluconobacter frateurii, respectively. Acetic acid production by the isolated Acetobacter strains was examined. All three strains gave 4% acetic acid from 6% initial ethanol at 37 °C, and 2.5% acetic acid from 4% initial ethanol at 40 °C. Compared with the two other strains, SL13E-4 showed both slower growth and slower acetic acid production. As well as the thermotolerant SKU1108 strain, the activities of the alcohol dehydrogenase and the aldehyde dehydrogenase of SL13E-2 and SL13E-4 were more stable than those of the mesophilic strain. The isolated strains were used to produce coconut water vinegar at higher temperatures than typically used for vinegar production.


Asunto(s)
Ácido Acético/metabolismo , Cocos/microbiología , Fermentación , Gluconobacter/metabolismo , Ácido Acético/química , Alcohol Deshidrogenasa/química , Aldehído Deshidrogenasa/química , Estabilidad de Enzimas , Etanol/química , Gluconobacter/enzimología , Gluconobacter/aislamiento & purificación , Calor , ARN Ribosómico 16S/genética , Sri Lanka
8.
Appl Microbiol Biotechnol ; 95(6): 1531-40, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22434571

RESUMEN

We succeeded in obtaining a strain adapted to higher temperature from a thermotolerant strain, Gluconobacter frateurii CHM43, for sorbose fermentation. The adapted strain showed higher growth and L-sorbose production than original CHM43 strain at higher temperature around 38.5-40 °C. It was also shown to be useful even with the fermentation without temperature control. To understand the sorbose fermentation ability of the adapted strain at higher temperature, D-sorbitol-oxidizing respiratory chain was compared with the CHM43 strain and the adapted strain. We found that the activity of pyrroloquinoline quinone (PQQ)-dependent glycerol dehydrogenase (GLDH), which is a primary dehydrogenase of the respiratory chain and responsible for L-sorbose production, was decreased when the temperature increased, but the decreased activity of GLDH was recovered by the addition of PQQ. Since the adapted strain was found to produce more PQQ than the CHM43 strain, it was suggested that the adapted strain keeps GLDH as holoenzyme with the increased PQQ production, and thus produces more L-sorbose and grows better under higher temperature.


Asunto(s)
Gluconobacter/fisiología , Mutación , Sorbosa/metabolismo , Adaptación Fisiológica , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Fermentación , Regulación Bacteriana de la Expresión Génica , Gluconobacter/enzimología , Gluconobacter/genética , Gluconobacter/crecimiento & desarrollo , Calor , Cofactor PQQ/metabolismo , Deshidrogenasas del Alcohol de Azúcar/genética , Deshidrogenasas del Alcohol de Azúcar/metabolismo
9.
Biosci Biotechnol Biochem ; 76(8): 1497-505, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22878210

RESUMEN

Further upstream of sldSLC, genes for FAD-dependent D-sorbitol dehydrogenase in Gluconobacter frateurii, three additional genes (sldR, xdhA, and perA) are found: for a transcriptional regulator, NAD(P)-dependent xylitol dehydrogenase, and a transporter protein, a member of major facilitator superfamily, respectively. xdhA and perA but not sldR were found to be in the same transcriptional unit. Disruption of sldR resulted in a dramatic decrease in sldSLC promoter activity, indicating that it is an activator for sldSLC expression. The recombinant protein of XdhA expressed in Escherichia coli showed NAD-dependent dehydrogenase activities with xylitol and D-sorbitol, but a mutant strain defective in this gene showed similar activities with both substrates as compared to the wild-type strain. Nonetheless, the growth of the xdhA mutant strain on D-sorbitol and xylitol was retarded, and so was that of a mutant strain defective in perA. These results indicate that xdhA and perA are involved in assimilation of D-sorbitol and xylitol.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteínas Portadoras/metabolismo , D-Xilulosa Reductasa/metabolismo , Gluconobacter/genética , L-Iditol 2-Deshidrogenasa/metabolismo , Sorbitol/metabolismo , Xilitol/metabolismo , Proteínas Bacterianas/genética , Proteínas Portadoras/genética , D-Xilulosa Reductasa/genética , Escherichia coli , Gluconobacter/enzimología , Calor , L-Iditol 2-Deshidrogenasa/genética , Mutación , NADP/metabolismo , Oxidación-Reducción , Regiones Promotoras Genéticas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Transcripción Genética
10.
Front Microbiol ; 13: 879246, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35685922

RESUMEN

Acetic acid bacteria (AAB) are a group of Gram-negative, strictly aerobic bacteria, including 19 reported genera until 2021, which are widely found on the surface of flowers and fruits, or in traditionally fermented products. Many AAB strains have the great abilities to incompletely oxidize a large variety of carbohydrates, alcohols and related compounds to the corresponding products mainly including acetic acid, gluconic acid, gulonic acid, galactonic acid, sorbose, dihydroxyacetone and miglitol via the membrane-binding dehydrogenases, which is termed as AAB oxidative fermentation (AOF). Up to now, at least 86 AOF products have been reported in the literatures, but no any monograph or review of them has been published. In this review, at first, we briefly introduce the classification progress of AAB due to the rapid changes of AAB classification in recent years, then systematically describe the enzymes involved in AOF and classify the AOF products. Finally, we summarize the application of molecular biology technologies in AOF researches.

11.
Biochemistry ; 50(9): 1556-66, 2011 Mar 08.
Artículo en Inglés | MEDLINE | ID: mdl-21155540

RESUMEN

PQQ is an exogenous, tricyclic, quino-cofactor for a number of bacterial dehydrogenases. The final step of PQQ formation is catalyzed by PqqC, a cofactorless oxidase. This study focuses on the activation of molecular oxygen in an enzyme active site without metal or cofactor and has identified a specific oxygen binding and activating pocket in PqqC. The active site variants H154N, Y175F,S, and R179S were studied with the goal of defining the site of O(2) binding and activation. Using apo-glucose dehydrogenase to assay for PQQ production, none of the mutants in this "O(2) core" are capable of PQQ/PQQH(2) formation. Spectrophotometric assays give insight into the incomplete reactions being catalyzed by these mutants. Active site variants Y175F, H154N, and R179S form a quinoid intermediate (Figure 1) anaerobically. Y175S is capable of proceeding further from quinoid to quinol, whereas Y175F, H154N, and R179S require O(2) to produce the quinol species. None of the mutations precludes substrate/product binding or oxygen binding. Assays for the oxidation of PQQH(2) to PQQ show that these O(2) core mutants are incapable of catalyzing a rate increase over the reaction in buffer, whereas H154N can catalyze the oxidation of PQQH(2) to PQQ in the presence of H(2)O(2) as an electron acceptor. Taken together, these data indicate that none of the targeted mutants can react fully to form quinone even in the presence of bound O(2). The data indicate a successful separation of oxidative chemistry from O(2) binding. The residues H154, Y175, and R179 are proposed to form a core O(2) binding structure that is essential for efficient O(2) activation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Cofactor PQQ/biosíntesis , Anaerobiosis , Apraxia Ideomotora , Proteínas Bacterianas/genética , Dominio Catalítico , Clonación Molecular , Methylobacterium/enzimología , Modelos Moleculares , Oxígeno/metabolismo , Conformación Proteica
12.
Biosci Biotechnol Biochem ; 75(3): 586-9, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21389606

RESUMEN

Selective, high-yield production of 5-keto-D-gluconate (5KGA) from D-glucose by Gluconobacter was achieved without genetic modification. 5KGA production by Gluconobacter suffers byproduct formation of 2-keto-D-gluconate (2KGA). By controlling the medium pH strictly in a range of pH 3.5-4.0, 5KGA was accumulated with 87% conversion yield from D-glucose. The pH dependency of 5KGA formation appeared to be related to that of gluconate oxidizing activity.


Asunto(s)
Gluconatos/metabolismo , Glucosa/metabolismo , Proteínas Bacterianas/metabolismo , Reactores Biológicos , Biotransformación , Fermentación , Gluconobacter/enzimología , Concentración de Iones de Hidrógeno , Oxidación-Reducción , Deshidrogenasas del Alcohol de Azúcar/metabolismo
13.
Biosci Biotechnol Biochem ; 75(10): 1921-8, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21979075

RESUMEN

Acetobacter tropicalis SKU1100 is a thermotolerant acetic acid bacterium that grows even at 42 °C, a much higher temperature than the limit for the growth of mesophilic strains. To elucidate the mechanism underlying the thermotolerance of this strain, we attempted to identify the genes essential for growth at high temperature by transposon (Tn10) mutagenesis followed by gene or genome analysis. Among the 4,000 Tn10-inserted mutants obtained, 32 exhibited a growth phenotype comparable to that of the parent strain at 30 °C but not at higher temperatures. We identified the insertion site of Tn10 on the chromosomes of all the mutant strains by TAIL (Thermal Asymmetric Interlaced)-PCR, and found 24 genes responsible for thermotolerance. The results also revealed a partial overlap between the genes required for thermotolerance and those required for acetic acid resistance. In addition, the origin and role of these thermotolerant genes are discussed.


Asunto(s)
Acetobacter/genética , Acetobacter/fisiología , Adaptación Biológica/genética , Genes Bacterianos/genética , Genómica , Temperatura , Acetobacter/crecimiento & desarrollo , Elementos Transponibles de ADN/genética , Mutación , Análisis de Secuencia
14.
J Ind Microbiol Biotechnol ; 38(9): 1485-92, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-21298320

RESUMEN

An acid proteinase from Monascus purpureus No. 3403, MpuAP, was previously purified and some characterized in our laboratory (Agric Biol Chem 48:1637-1639, 1984). However, further information about this enzyme is lacking. In this study, we investigated MpuAP's comprehensive substrate specificity, storage stability, and prospects for reducing antigenicity of whey proteins for application in the food industry. MpuAP hydrolyzed primarily five peptide bonds, Gln(4)-His(5), His(10)-Leu(11), Ala(14)-Leu(15), Gly(23)-Phe(24) and Phe(24)-Phe(25) in the oxidized insulin B-chain. The lyophilized form of the enzyme was well preserved at 30-40°C for 7 days without stabilizers. To investigate the possibility of reducing the antigenicity of the milk whey protein, enzymatic hydrolysates of the whey protein were evaluated by inhibition ELISA. Out of the three main components of whey protein, casein and α-lactalbumin were efficiently degraded by MpuAP. The sequential reaction of MpuAP and trypsin against the whey protein successfully degraded casein, α-lactalbumin and ß-lactoglobulin with the highest degree of hydrolysis. As a result, the hydrolysates obtained by using the MpuAP-trypsin combination showed the lowest antigenicity compared with the single application of pepsin, trypsin or pepsin-trypsin combination. Therefore, the overall result suggested that the storage-stable MpuAP and trypsin combination will be a productive approach for making hypoallergic bovine milk whey protein hydrolysates.


Asunto(s)
Proteínas de la Leche/inmunología , Proteínas de la Leche/metabolismo , Monascus/enzimología , Péptido Hidrolasas/metabolismo , Animales , Antígenos/inmunología , Antígenos/metabolismo , Caseínas/metabolismo , Bovinos , Hidrólisis , Lactalbúmina/metabolismo , Lactoglobulinas/metabolismo , Papaína/metabolismo , Pepsina A/metabolismo , Hidrolisados de Proteína/inmunología , Tripsina/metabolismo , Proteína de Suero de Leche
15.
Microbiol Resour Announc ; 10(25): e0141420, 2021 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-34165330

RESUMEN

We report here the draft genome sequence for Saccharomyces cerevisiae strain Awamori number 101, an industrial strain used for producing awamori, a distilled alcohol beverage. It was constructed by assembling the short reads obtained by next-generation sequencing. The 315 contigs constitute an 11.5-Mbp genome sequence encoding 6,185 predicted proteins.

16.
Proteins ; 78(11): 2554-62, 2010 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-20602352

RESUMEN

Pyrroloquinoline quinone [4,5-dihydro-4,5-dioxo-1H-pyrrolo[2,3-f]quinoline-2,7,9-tricarboxylic acid (PQQ)] is a bacterial cofactor in numerous alcohol dehydrogenases including methanol dehydrogenase and glucose dehydrogenase. Its biosynthesis in Klebsiella pneumoniae is facilitated by six genes, pqqABCDEF and proceeds by an unknown pathway. PqqC is one of two metal free oxidases of known structure and catalyzes the last step of PQQ biogenesis which involves a ring closure and an eight-electron oxidation of the substrate [3a-(2-amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9-dicarboxylic acid (AHQQ)]. PqqC has 14 conserved active site residues, which have previously been shown to be in close contact with bound PQQ. Herein, we describe the structures of three PqqC active site variants, H154S, Y175F, and the double mutant R179S/Y175S. The H154S crystal structure shows that, even with PQQ bound, the enzyme is still in the "open" conformation with helices alpha5b and alpha6 unfolded and the active site solvent accessible. The Y175F PQQ complex crystal structure reveals the closed conformation indicating that Y175 is not required for the conformational change. The R179S/Y175S AHQQ complex crystal structure is the most mechanistically informative, indicating an open conformation with a reaction intermediate trapped in the active site. The intermediate seen in R179S/Y175S is tricyclic but nonplanar, implying that it has not undergone oxidation. These studies implicate a stepwise process in which substrate binding leads to the generation of the closed protein conformation, with the latter playing a critical role in O(2) binding and catalysis.


Asunto(s)
Proteínas Bacterianas/química , Mutación , Oxígeno/química , Cofactor PQQ/química , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Dominio Catalítico , Secuencia Conservada , Cristalografía por Rayos X , Klebsiella pneumoniae/enzimología , Klebsiella pneumoniae/genética , Oxígeno/metabolismo , Cofactor PQQ/metabolismo
17.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 66(Pt 12): 1680-2, 2010 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-21139224

RESUMEN

NADPH-dependent 5-keto-D-gluconate reductase from Gluconobacter suboxydans IFO12528 (5KGR) catalyzes oxidoreduction between 5-keto-D-gluconate and D-gluconate with high specificity. 5KGR was expressed in Escherichia coli, purified and crystallized with 5-keto-D-gluconate and NADPH using the sitting-drop vapour-diffusion method at 288 K. A crystal of the 5KGR-NADPH complex was obtained using reservoir solution containing PEG 4000 as a precipitant and diffracted X-rays to 1.75 Šresolution. The crystal of the complex belonged to space group P4(2)2(1)2, with unit-cell parameters a=b=128.6, c=62.9 Å. A crystal of the 5KGR-NADPH-5-keto-D-gluconate complex was prepared by soaking the 5KGR-NADPH complex crystal in reservoir solution supplemented with 100 mM 5-keto-D-gluconate and 10 mM NADPH for 20 min and diffracted X-rays to 2.26 Šresolution. The crystal of the ternary complex belonged to space group P4(2)2(1)2, with unit-cell parameters a=b=128.7, c=62.5 Å. Both crystals contained two molecules in the asymmetric unit.


Asunto(s)
Proteínas Bacterianas/química , Deshidrogenasas de Carbohidratos/química , Gluconatos/química , Gluconobacter/enzimología , NADP/química , Oxidorreductasas/química , Cristalización , Cristalografía por Rayos X
18.
Appl Microbiol Biotechnol ; 85(3): 741-51, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19711069

RESUMEN

We isolated several thermotolerant Acetobacter species of which MSU10 strain, identified as Acetobacter pasteurianus, could grow well on agar plates at 41 degrees C, tolerate to 1.5% acetic acid or 4% ethanol at 39 degrees C, similarly seen with A. pasteurianus SKU1108 previously isolated. The MSU10 strain showed higher acetic acid productivity in a medium containing 6% ethanol at 37 degrees C than SKU1108 while SKU1108 strain could accumulate more acetic acid in a medium supplemented with 4-5% ethanol at the same temperature. The fermentation ability at 37 degrees C of these thermotolerant strains was superior to that of mesophilic A. pasteurianus IFO3191 strain having weak growth and very delayed acetic acid production at 37 degrees C even at 4% ethanol. Alcohol dehydrogenases (ADHs) were purified from MSU10, SKU1108, and IFO3191 strains, and their properties were compared related to the thermotolerance. ADH of the thermotolerant strains had a little higher optimal temperature and heat stability than that of mesophilic IFO3191. More critically, ADHs from MSU10 and SKU1108 strains exhibited a higher resistance to ethanol and acetic acid than IFO3191 enzyme at elevated temperature. Furthermore, in this study, the ADH genes were cloned, and the amino acid sequences of ADH subunit I, subunit II, and subunit III were compared. The difference in the amino acid residues could be seen, seemingly related to the thermotolerance, between MSU10 or SKU1108 ADH and IFO 3191 ADH.


Asunto(s)
Acetobacter/enzimología , Acetobacter/crecimiento & desarrollo , Oxidorreductasas de Alcohol/metabolismo , Proteínas Bacterianas/metabolismo , Calor , Viabilidad Microbiana/efectos de la radiación , Ácido Acético/metabolismo , Acetobacter/genética , Acetobacter/efectos de la radiación , Oxidorreductasas de Alcohol/genética , Oxidorreductasas de Alcohol/aislamiento & purificación , Sustitución de Aminoácidos/genética , Proteínas Bacterianas/genética , Clonación Molecular , Medios de Cultivo/química , Análisis Mutacional de ADN , Estabilidad de Enzimas , Etanol/metabolismo , Datos de Secuencia Molecular , Análisis de Secuencia de ADN
19.
Appl Environ Microbiol ; 75(13): 4240-7, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19411430

RESUMEN

We isolated thermotolerant Gluconobacter strains that are able to produce 5-keto-d-gluconic acid (5KGA) at 37 degrees C, a temperature at which regular mesophilic 5KGA-producing strains showed much less growth and 5KGA production. The thermotolerant strains produced 2KGA as the major product at both 30 and 37 degrees C. The amount of ketogluconates produced at 37 degrees C was slightly less than the amount produced at 30 degrees C. To improve the yield of 5KGA in these strains, we disrupted flavin adenine dinucleotide-gluconate dehydrogenase (FAD-GADH), which is responsible for 2KGA production. Genes for FAD-GADH were cloned by using inverse PCR and an in vitro cloning strategy. The sequences obtained for three thermotolerant strains were identical and showed high levels of identity to the FAD-GADH sequence reported for the genome of Gluconobacter oxydans 621 H. A kanamycin resistance gene cassette was used to disrupt the FAD-GADH genes in the thermotolerant strains. The mutant strains produced 5KGA exclusively, and the final yields were over 90% at 30 degrees C and 50% at 37 degrees C. We found that the activity of pyrroloquinoline quinone (PQQ)-dependent glycerol dehydrogenase, which is responsible for 5KGA production, increased in response to addition of PQQ and CaCl(2) in vitro when cells were grown at 37 degrees C. Addition of 5 mM CaCl(2) to the culture medium of the mutant strains increased 5KGA production to the point where over 90% of the initial substrate was converted. The thermotolerant Gluconobacter strains that we isolated in this study provide a promising new option for industrial 5KGA production.


Asunto(s)
Deshidrogenasas de Carbohidratos/metabolismo , Eliminación de Gen , Gluconatos/metabolismo , Gluconobacter/enzimología , Gluconobacter/genética , Temperatura , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cloruro de Calcio/farmacología , Deshidrogenasas de Carbohidratos/genética , Clonación Molecular , Coenzimas/farmacología , Activadores de Enzimas/farmacología , Orden Génico , Genes Bacterianos , Gluconobacter/metabolismo , Datos de Secuencia Molecular , Mutagénesis Insercional , Cofactor PQQ/farmacología , Análisis de Secuencia de ADN , Homología de Secuencia , Deshidrogenasas del Alcohol de Azúcar/metabolismo
20.
Artículo en Inglés | MEDLINE | ID: mdl-19478431

RESUMEN

NADPH-dependent L-sorbose reductase (SR) from Gluconobacter frateurii was expressed in Escherichia coli, purified and crystallized with L-sorbose or NADPH using the sitting-drop vapour-diffusion method at 293 K. Crystals of the SR-L-sorbose complex and the SR-NADPH complex were obtained using reservoir solutions containing PEG 2000 or PEG 400 as precipitants and diffracted X-rays to 2.38 and 1.90 A resolution, respectively. The crystal of the SR-L-sorbose complex belonged to space group C222(1), with unit-cell parameters a = 124.2, b = 124.1, c = 60.8 A. The crystal of the SR-NADPH complex belonged to space group P2(1), with unit-cell parameters a = 124.3, b = 61.0, c = 124.5 A, beta = 89.99 degrees . The crystals contained two and eight molecules, respectively, in the asymmetric unit.


Asunto(s)
Gluconobacter/enzimología , NADP/metabolismo , Sorbosa/metabolismo , Deshidrogenasas del Alcohol de Azúcar/aislamiento & purificación , Deshidrogenasas del Alcohol de Azúcar/metabolismo , Clonación Molecular , Cristalización , Recolección de Datos , Escherichia coli/genética , Genes Bacterianos , Estadística como Asunto , Especificidad por Sustrato , Deshidrogenasas del Alcohol de Azúcar/genética , Temperatura , Difracción de Rayos X
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