Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 33
Filtrar
1.
Nucleic Acids Res ; 52(2): 513-524, 2024 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-38100361

RESUMEN

Protein translation is orchestrated through tRNA aminoacylation and ribosomal elongation. Among the highly conserved structure of tRNAs, they have distinguishing features which promote interaction with their cognate aminoacyl tRNA synthetase (aaRS). These key features are referred to as identity elements. In our study, we investigated the tRNA:aaRS pair that installs the 22nd amino acid, pyrrolysine (tRNAPyl:PylRS). Pyrrolysyl-tRNA synthetases (PylRSs) are naturally encoded in some archaeal and bacterial genomes to acylate tRNAPyl with pyrrolysine. Their large amino acid binding pocket and poor recognition of the tRNA anticodon have been instrumental in incorporating >200 noncanonical amino acids. PylRS enzymes can be divided into three classes based on their genomic structure. Two classes contain both an N-terminal and C-terminal domain, however the third class (ΔpylSn) lacks the N-terminal domain. In this study we explored the tRNA identity elements for a ΔpylSn tRNAPyl from Candidatus Methanomethylophilus alvus which drives the orthogonality seen with its cognate PylRS (MaPylRS). From aminoacylation and translation assays we identified five key elements in ΔpylSn tRNAPyl necessary for MaPylRS activity. The absence of a base (position 8) and a G-U wobble pair (G28:U42) were found to affect the high-resolution structure of the tRNA, while molecular dynamic simulations led us to acknowledge the rigidity imparted from the G-C base pairs (G3:C70 and G5:C68).


Enzymes known as PylRS offer the remarkable ability to expand the natural genetic code of a living cell with unnatural amino acids. Currently, over 200 unnatural amino acids can be genetically encoded with the help of PylRS and its partner tRNAPyl, enabling us to endow proteins with novel properties, or regulate protein activity using light or inducible cross-linking. One intriguing feature of PylRS enzymes is their ability to avoid cross-reactivity when two PylRS homologs from different organisms-such as those from the archaea Methanosarcina mazei and Methanomethylophilus alvus-are co-expressed in a single cell. This makes it possible to simultaneously encode two unnatural amino acids in a single protein. This study illuminates the elusive mechanism of PylRS specificity by using cryo-electron microscopy, biochemistry and molecular simulations. The interaction of PylRS from M. alvus with its tRNAPyl is best described as two pieces of a jigsaw puzzle; in which PylRS recognizes the unique shape of its cognate tRNA instead of specific nucleotides in the tRNA sequence like other tRNA-binding enzymes. This finding may streamline the rational design of tools for simultaneous genetic incorporation of multiple unnatural amino acids, thereby facilitating the development of valuable proteins for research, medicine, and biotechnology.


Asunto(s)
Aminoacil-ARNt Sintetasas , Archaea , Microbioma Gastrointestinal , Humanos , Aminoácidos/metabolismo , Aminoacil-ARNt Sintetasas/aislamiento & purificación , Aminoacil-ARNt Sintetasas/metabolismo , Archaea/enzimología , ARN de Transferencia/química , ARN de Transferencia/metabolismo , Aminoacilación de ARN de Transferencia
2.
Nucleic Acids Res ; 51(11): 5774-5790, 2023 06 23.
Artículo en Inglés | MEDLINE | ID: mdl-37102635

RESUMEN

In bacteria, release of newly synthesized proteins from ribosomes during translation termination is catalyzed by class-I release factors (RFs) RF1 or RF2, reading UAA and UAG or UAA and UGA codons, respectively. Class-I RFs are recycled from the post-termination ribosome by a class-II RF, the GTPase RF3, which accelerates ribosome intersubunit rotation and class-I RF dissociation. How conformational states of the ribosome are coupled to the binding and dissociation of the RFs remains unclear and the importance of ribosome-catalyzed guanine nucleotide exchange on RF3 for RF3 recycling in vivo has been disputed. Here, we profile these molecular events using a single-molecule fluorescence assay to clarify the timings of RF3 binding and ribosome intersubunit rotation that trigger class-I RF dissociation, GTP hydrolysis, and RF3 dissociation. These findings in conjunction with quantitative modeling of intracellular termination flows reveal rapid ribosome-dependent guanine nucleotide exchange to be crucial for RF3 action in vivo.


Asunto(s)
Bacterias , Terminación de la Cadena Péptídica Traduccional , Factores de Terminación de Péptidos , Bacterias/metabolismo , Guanosina Trifosfato/metabolismo , Factores de Terminación de Péptidos/metabolismo , Unión Proteica
3.
Small ; 20(13): e2306561, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-37968810

RESUMEN

The electrochemical properties of vanadium-based materials as cathode materials for aqueous zinc ion batteries are still restricted by low conductivity, sluggish reaction kinetics, and poor structural stability. Herein, the [VO6] octahedron, as the basic unit of vanadium-oxide layer of ammonium vanadates (NH4V4O10, denoted as NVO), is incorporated by F atoms to regulate the coordinated environment of vanadium. Density functional theory (DFT) calculations and experimental results show that both physicochemical and electrochemical properties of NVO are improved by F-doping. The enhanced electronic conductivity accelerates the electron transfer and the expanded interlayer spacing expedites the diffusion kinetics of zinc ions. As a result, the F-doped NVO (F-NVO) electrode shows a high discharge capacity (465 mAh g-1 at 0.1 A g-1), good rate capability (260 mAh g-1 at 5 A g-1), and long-term cycling stability (88% capacity retention over 2000 cycles at 4 A g-1). The reaction kinetics and energy storage mechanism of F-NVO are further validated by in situ and ex situ characterizations.

4.
Nucleic Acids Res ; 50(18): 10201-10211, 2022 10 14.
Artículo en Inglés | MEDLINE | ID: mdl-35882385

RESUMEN

Ribosomes are remarkable in their malleability to accept diverse aminoacyl-tRNA substrates from both the same organism and other organisms or domains of life. This is a critical feature of the ribosome that allows the use of orthogonal translation systems for genetic code expansion. Optimization of these orthogonal translation systems generally involves focusing on the compatibility of the tRNA, aminoacyl-tRNA synthetase, and a non-canonical amino acid with each other. As we expand the diversity of tRNAs used to include non-canonical structures, the question arises as to the tRNA suitability on the ribosome. Specifically, we investigated the ribosomal translation of allo-tRNAUTu1, a uniquely shaped (9/3) tRNA exploited for site-specific selenocysteine insertion, using single-molecule fluorescence. With this technique we identified ribosomal disassembly occurring from translocation of allo-tRNAUTu1 from the A to the P site. Using cryo-EM to capture the tRNA on the ribosome, we pinpointed a distinct tertiary interaction preventing fluid translocation. Through a single nucleotide mutation, we disrupted this tertiary interaction and relieved the translation roadblock. With the continued diversification of genetic code expansion, our work highlights a targeted approach to optimize translation by distinct tRNAs as they move through the ribosome.


Continued expansion of the genetic code has required the use of synthetic tRNAs for decoding. Some of these synthetic tRNAs have unique structural features that are not observed in canonical tRNAs. Here, the authors applied single-molecule, biochemical and structural methods to determine whether these distinct features were deleterious for efficient protein translation on the ribosome. With a focus on selenocysteine insertion, the authors explored an allo-tRNA with a 9/3 acceptor domain. They observed a translational roadblock that occurred in A to P site tRNA translocation. This block was mediated by a tertiary interaction across the tRNA core, directing the variable arm position into an unfavorable conformation. A single-nucleotide mutation disrupted this interaction, providing flexibility in the variable arm and promoting efficient protein production.


Asunto(s)
Biosíntesis de Proteínas , ARN de Transferencia/ultraestructura , Ribosomas/ultraestructura , Aminoácidos/genética , Aminoacil-ARNt Sintetasas/genética , Nucleótidos/metabolismo , ARN de Transferencia/metabolismo , Ribosomas/metabolismo , Selenocisteína/química
5.
Small ; 19(45): e2303915, 2023 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-37420323

RESUMEN

Designing superb dielectric capacitors is valuable but challenging since achieving simultaneously large energy-storage (ES) density and high efficiency is difficult. Herein, the synergistic effect of grain refining, bandgap widening, and domain engineering is proposed to boost comprehensive ES properties by incorporating CaTiO3 into 0.92NaNbO3 -0.08BiNi0.67 Ta0.33 O3 matrix (as abbreviated NN-BNT-xCT). Apart from grain refining and bandgap widening, multiple local distortions embedded in labyrinthine submicro-domains, as indicated by diffraction-freckle splitting and ½-type superlattices, produce slush-like polar clusters for the NN-BNT-0.2CT ceramic, which should be ascribed to the coexisting P4bm, P21 ma, and Pnma2 phases. Consequently, a high recoverable ES density Wrec of ≈ 7.1 J cm-3 and a high efficiency η of ≈ 90% at 646 kV cm-1 is achieved for the NN-BNT-0.2CT ceramic. Such hierarchically polar structure is favorable to superb comprehensive ES properties, which provide a strategy for developing high-performance dielectric capacitors.

6.
Small ; 19(12): e2206662, 2023 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-36587975

RESUMEN

The development of high-performance lead-free dielectric ceramic capacitors is essential in the field of advanced electronics and electrical power systems. A huge challenge, however, is how to simultaneously realize large recoverable energy density (Wrec ), ultrahigh efficiency (η), and satisfactory temperature stability to effectuate next-generation high/pulsed power capacitors applications. Here, a strategy of utilizing nanoscale polarization heterogeneous regions is demonstrated for high-performance dielectric capacitors, showing comprehensive properties of large Wrec (≈6.39 J cm-3 ) and ultrahigh η (≈94.4%) at 700 kV cm-1 accompanied by excellent thermal endurance (20-160 °C), frequency stability (5-200 Hz), cycling reliability (1-105 cycles) at 500 kV cm-1 , and superior charging-discharging performance (discharge rate t0.9 ≈ 28.4 ns, power density PD ≈161.3 MW cm-3 ). The observations reveal that constructing the polarization heterogeneous regions in a linear dielectric to form novel relaxor ferroelectrics produces favorable microstructural characters, including extremely small polar nanoregions with high dynamics and multiphase coexistence and stable local structure symmetry, which enables large breakdown strength and ultralow polarization switching hysteresis, hence synergistically contributing to high-efficient capacitive energy storage. This study thus opens up a novel strategy to design lead-free dielectrics with comprehensive high-efficient energy storage performance for advanced pulsed power capacitors applications.

7.
Small ; 19(40): e2303227, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37264764

RESUMEN

Vanadyl phosphate (VOPO4 ·2H2 O) has been regarded as one of the most promising cathode materials for aqueous Zn-ion batteries due to its distinct layered structure. However, VOPO4 ·2H2 O has not yet demonstrated the exceptional Zn ion storage performance owing to the structural deterioration during repeated charging/discharging process and poor intrinsic conductivity. In this work, 2D sodium vanadyl phosphate (NaVOPO4 ·0.83H2 O, denoted as NaVOP) is designed as a cathode material for Zn-ion batteries, in which sodium ions are preinserted into the interlayer, replacing part of water. Benefiting from the in situ surface oxidization, improved electronic conductivity, and increased hydrophobicity, the NaVOP electrode exhibits a high discharge capacity of 187 mAh g-1 at 0.1 A g-1 after activation, excellent rate capability and enhanced cycling performance with 85% capacity retention after 1500 cycles at 1 A g-1 . The energy storage mechanism of the NaVOP nanoflakes based on the rapid Zn2+ and H+ intercalation pseudocapacitance are investigated via multiple ex situ characterizations.

8.
Nat Chem Biol ; 16(3): 310-317, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31844301

RESUMEN

Chloramphenicol (CHL) and linezolid (LZD) are antibiotics that inhibit translation. Both were thought to block peptide-bond formation between all combinations of amino acids. Yet recently, a strong nascent peptide context-dependency of CHL- and LZD-induced translation arrest was discovered. Here we probed the mechanism of action of CHL and LZD by using single-molecule Förster resonance energy transfer spectroscopy to monitor translation arrest induced by antibiotics. The presence of CHL or LZD does not substantially alter dynamics of protein synthesis until the arrest-motif of the nascent peptide is generated. Inhibition of peptide-bond formation compels the fully accommodated A-site transfer RNA to undergo repeated rounds of dissociation and nonproductive rebinding. The glycyl amino-acid moiety on the A-site Gly-tRNA manages to overcome the arrest by CHL. Our results illuminate the mechanism of CHL and LZD action through their interactions with the ribosome, the nascent peptide and the incoming amino acid, perturbing elongation dynamics.


Asunto(s)
Cloranfenicol/farmacología , Linezolid/farmacología , Biosíntesis de Proteínas/efectos de los fármacos , Aminoácidos/metabolismo , Antibacterianos/farmacología , Sitios de Unión , Cloranfenicol/metabolismo , Escherichia coli/metabolismo , Transferencia Resonante de Energía de Fluorescencia/métodos , Linezolid/metabolismo , Péptidos/metabolismo , Unión Proteica , ARN de Transferencia/metabolismo , Ribosomas/metabolismo
9.
Inorg Chem ; 60(9): 6559-6568, 2021 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-33861589

RESUMEN

The development of lead-free ceramics with appropriate energy storage properties is essential for the successful practical application of advanced electronic devices. In this study, a site engineering strategy was proposed to concurrently decrease grain size, increase the band-gap, and enhance the relaxor nature in Ta-doped tungsten bronze ceramics (Sr2NaNb5-xTaxO15) for the improvement of the dielectric breakdown strength and the polarization difference. As a result, the ceramic with x = 1.5, that is, Sr2NaNb3.5Ta1.5O15, exhibited superior energy density (∼3.99 J/cm3) and outstanding energy efficiency (∼91.7%) (@380 kV/cm) as well as good thermal stability and remarkable fatigue endurance. In addition, the ceramic demonstrated an ultrashort discharge time (τ0.9 < 57 ns), a high discharge current density (925.8 A/cm2) along with a high power density (78.7 MW/cm3). The energy storage properties in combination with good stability achieved in this work indicate the powerful potential of Sr2NaNb5-xTaxO15 tungsten bronze ceramics for high-performance capacitor applications. This material can be considered as a complement to the widely studied perovskite-based relaxor ceramics and should be further investigated in the future.

10.
Opt Lett ; 45(8): 2391-2394, 2020 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-32287241

RESUMEN

A novel lead-free luminescent ferroelectric (FE) ceramic, ${{\rm Bi}_{0.5}}{{\rm Na}_{0.5}}{{\rm TiO}_3} {-} {0.{06\; \rm BaTiO}_3} {-} {0.{055\;\rm Sr}_{0.7}}{{\rm Bi}_{0.18}}{{\rm Er}_{0.02 \,\square\, 0.1}}$Bi0.5Na0.5TiO3-0.06BaTiO3-0.055Sr0.7Bi0.18Er0.02◻0.1${{\rm TiO}_3}$TiO3 (BNT-BT-SBET), is developed with an adiabatic temperature change ($\Delta T$ΔT) of 0.7 K under an electric field ($E$E) of 60 kV/cm at room temperature, an anti-Stokes fluorescence cooling, and a maximum optical $T$T sensitivity of ${0.0055}\;{{\rm K}^{ - 1}}$0.0055K-1 at 522 K. Interestingly, the electrocaloric response reaches a saturation at permittivity shoulder $T$T of 100°C; meanwhile, the maximized emission intensity of $^2{{\rm H}_{11/2}}{ \to ^4}{{\rm I}_{15/2}}$2H11/2→4I15/2 occurs. $T$T- and $E$E-tunable enhancement of $^2{{\rm H}_{11/2}}{ \to ^4}{{\rm I}_{15/2}}$2H11/2→4I15/2 emission intensity is due to the population inversion from the $^4{{\rm S}_{3/2}}$4S3/2 to $^2{{\rm H}_{11/2}}$2H11/2 states caused by an incoherent regime consisting of FE phase and polar nanoregions in a relaxor matrix.

11.
Nucleic Acids Res ; 46(3): 1362-1374, 2018 02 16.
Artículo en Inglés | MEDLINE | ID: mdl-29267976

RESUMEN

We studied the effects of aminoglycosides and changing Mg2+ ion concentration on the accuracy of initial codon selection by aminoacyl-tRNA in ternary complex with elongation factor Tu and GTP (T3) on mRNA programmed ribosomes. Aminoglycosides decrease the accuracy by changing the equilibrium constants of 'monitoring bases' A1492, A1493 and G530 in 16S rRNA in favor of their 'activated' state by large, aminoglycoside-specific factors, which are the same for cognate and near-cognate codons. Increasing Mg2+ concentration decreases the accuracy by slowing dissociation of T3 from its initial codon- and aminoglycoside-independent binding state on the ribosome. The distinct accuracy-corrupting mechanisms for aminoglycosides and Mg2+ ions prompted us to re-interpret previous biochemical experiments and functional implications of existing high resolution ribosome structures. We estimate the upper thermodynamic limit to the accuracy, the 'intrinsic selectivity' of the ribosome. We conclude that aminoglycosides do not alter the intrinsic selectivity but reduce the fraction of it that is expressed as the accuracy of initial selection. We suggest that induced fit increases the accuracy and speed of codon reading at unaltered intrinsic selectivity of the ribosome.


Asunto(s)
Antibacterianos/farmacología , Escherichia coli/efectos de los fármacos , Código Genético , Magnesio/farmacología , Biosíntesis de Proteínas/efectos de los fármacos , Ribosomas/efectos de los fármacos , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Cationes Bivalentes , Codón , Escherichia coli/genética , Escherichia coli/metabolismo , Gentamicinas/farmacología , Cinética , Neomicina/farmacología , Paromomicina/farmacología , Factor Tu de Elongación Peptídica/genética , Factor Tu de Elongación Peptídica/metabolismo , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/metabolismo , Aminoacil-ARN de Transferencia/genética , Aminoacil-ARN de Transferencia/metabolismo , Ribosomas/genética , Ribosomas/metabolismo , Fracciones Subcelulares/química , Fracciones Subcelulares/efectos de los fármacos , Fracciones Subcelulares/metabolismo
12.
Nucleic Acids Res ; 46(11): 5861-5874, 2018 06 20.
Artículo en Inglés | MEDLINE | ID: mdl-29733411

RESUMEN

The GTPase EF-Tu in ternary complex with GTP and aminoacyl-tRNA (aa-tRNA) promotes rapid and accurate delivery of cognate aa-tRNAs to the ribosomal A site. Here we used cryo-EM to study the molecular origins of the accuracy of ribosome-aided recognition of a cognate ternary complex and the accuracy-amplifying role of the monitoring bases A1492, A1493 and G530 of the 16S rRNA. We used the GTPase-deficient EF-Tu variant H84A with native GTP, rather than non-cleavable GTP analogues, to trap a near-cognate ternary complex in high-resolution ribosomal complexes of varying codon-recognition accuracy. We found that ribosome complexes trapped by GTPase-deficicent ternary complex due to the presence of EF-TuH84A or non-cleavable GTP analogues have very similar structures. We further discuss speed and accuracy of initial aa-tRNA selection in terms of conformational changes of aa-tRNA and stepwise activation of the monitoring bases at the decoding center of the ribosome.


Asunto(s)
Codón , Guanosina Trifosfato/química , Factor Tu de Elongación Peptídica/química , Aminoacil-ARN de Transferencia/química , Ribosomas/química , Microscopía por Crioelectrón , Guanosina Trifosfato/metabolismo , Modelos Moleculares , Mutación , Factor Tu de Elongación Peptídica/genética , Factor Tu de Elongación Peptídica/metabolismo , ARN Mensajero/química , ARN Ribosómico 16S/química
13.
Learn Mem ; 25(4): 147-157, 2018 04.
Artículo en Inglés | MEDLINE | ID: mdl-29545386

RESUMEN

The formation of mate recognition memory in mice is associated with neural changes at the reciprocal dendrodendritic synapses between glutamatergic mitral cell (MC) projection neurons and GABAergic granule cell (GC) interneurons in the accessory olfactory bulb (AOB). Although noradrenaline (NA) plays a critical role in the formation of the memory, the mechanism by which it exerts this effect remains unclear. Here we used extracellular field potential and whole-cell patch-clamp recordings to assess the actions of bath-applied NA (10 µM) on the glutamatergic transmission and its plasticity at the MC-to-GC synapse in the AOB. Stimulation (400 stimuli) of MC axons at 10 Hz but not at 100 Hz effectively induced N-methyl-d-aspartate (NMDA) receptor-dependent long-term potentiation (LTP), which exhibited reversibility. NA paired with subthreshold 10-Hz stimulation (200 stimuli) facilitated the induction of NMDA receptor-dependent LTP via the activation of α2-adrenergic receptors (ARs). We next examined how NA, acting at α2-ARs, facilitates LTP induction. In terms of acute actions, NA suppressed GC excitatory postsynaptic current (EPSC) responses to single pulse stimulation of MC axons by reducing glutamate release from MCs via G-protein coupled inhibition of calcium channels. Consequently, NA reduced recurrent inhibition of MCs, resulting in the enhancement of evoked EPSCs and spike fidelity in GCs during the 10-Hz stimulation used to induce LTP. These results suggest that NA, acting at α2-ARs, facilitates the induction of NMDA receptor-dependent LTP at the MC-to-GC synapse by shifting its threshold through disinhibition of MCs.


Asunto(s)
Potenciación a Largo Plazo , Neuronas/fisiología , Bulbo Olfatorio/fisiología , Receptores Adrenérgicos alfa 2/fisiología , Sinapsis/fisiología , Potenciales de Acción , Animales , Potenciales Postsinápticos Excitadores , Ácido Glutámico/metabolismo , Interneuronas/fisiología , Ratones Endogámicos BALB C , Receptores de N-Metil-D-Aspartato/fisiología , Ácido gamma-Aminobutírico/metabolismo
14.
RNA ; 22(6): 896-904, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-27090284

RESUMEN

The ribosome uses initial and proofreading selection of aminoacyl-tRNAs for accurate protein synthesis. Anomalously high initial misreading in vitro of near-cognate codons by tRNA(His) and tRNA(Glu) suggested potential error hotspots in protein synthesis, but in vivo data suggested their partial neutralization. To clarify the role of proofreading in this error reduction, we varied the Mg(2+) ion concentration to calibrate the total accuracy of our cell-free system to that in the living Escherichia coli cell. We found the total accuracy of tRNA selection in our system to vary by five orders of magnitude depending on tRNA identity, type of mismatch, and mismatched codon position. Proofreading and initial selection were positively correlated at high, but uncorrelated at low initial selection, suggesting hyperactivated proofreading as a means to neutralize potentially disastrous initial selection errors.


Asunto(s)
Código Genético , Biosíntesis de Proteínas , ARN de Transferencia/química , Codón
15.
BMC Neurol ; 18(1): 66, 2018 May 10.
Artículo en Inglés | MEDLINE | ID: mdl-29747571

RESUMEN

BACKGROUND: HIV is a neurotropic virus, and it can bring about neurodegeneration and may even result in cognitive impairments. The precise mechanism of HIV-associated white matter (WM) injury is unknown. The effects of multiple clinical contributors on WM impairments and the relationship between the WM alterations and cognitive performance merit further investigation. METHODS: Diffusion tensor imaging (DTI) was performed in 20 antiretroviral-naïve HIV-positive asymptomatic neurocognitive impairment (ANI) adults and 20 healthy volunteers. Whole-brain analysis of DTI metrics between groups was conducted by employing tract-based spatial statistics (TBSS), including fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD) and radial diffusivity (RD). DTI parameters were correlated with clinical variables (age, CD4+ cell count, CD4+/CD8+ ratio, plasma viral load and duration of HIV infection) and multiple cognitive tests by using multilinear regression analyses. RESULTS: DTI quantified diffusion alterations in the corpus callosum and corona radiata (MD increased significantly, P < 0.05) and chronic axonal injury in the corpus callosum, corona radiata, internal capsule, external capsule, posterior thalamic radiation, sagittal stratum, and superior longitudinal fasciculus (AD increased significantly, P < 0.05). The impairments in the corona radiata had significant correlations with the current CD4+/CD8+ ratios. Increased MD or AD values in multiple white matter structures showed significant associations with many cognitive domain tests. CONCLUSIONS: WM impairments are present in neurologically asymptomatic HIV+ adults, periventricular WM (corpus callosum and corona radiata) are preferential occult injuries, which is associated with axonal chronic damage rather than demyelination. Axonopathy may exist before myelin injury. DTI-TBSS is helpful to explore the WM microstructure abnormalities and provide a new perspective for the investigation of the pathomechanism of HIV-associated WM injury.


Asunto(s)
Axones/fisiología , Disfunción Cognitiva , Infecciones por VIH , Adulto , Disfunción Cognitiva/epidemiología , Disfunción Cognitiva/etiología , Disfunción Cognitiva/fisiopatología , Infecciones por VIH/complicaciones , Infecciones por VIH/epidemiología , Infecciones por VIH/fisiopatología , Humanos
16.
Proc Natl Acad Sci U S A ; 112(31): 9602-7, 2015 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-26195797

RESUMEN

We used a cell-free system with pure Escherichia coli components to study initial codon selection of aminoacyl-tRNAs in ternary complex with elongation factor Tu and GTP on messenger RNA-programmed ribosomes. We took advantage of the universal rate-accuracy trade-off for all enzymatic selections to determine how the efficiency of initial codon readings decreased linearly toward zero as the accuracy of discrimination against near-cognate and wobble codon readings increased toward the maximal asymptote, the d value. We report data on the rate-accuracy variation for 7 cognate, 7 wobble, and 56 near-cognate codon readings comprising about 15% of the genetic code. Their d values varied about 400-fold in the 200-80,000 range depending on type of mismatch, mismatch position in the codon, and tRNA isoacceptor type. We identified error hot spots (d = 200) for U:G misreading in second and U:U or G:A misreading in third codon position by His-tRNA(His) and, as also seen in vivo, Glu-tRNA(Glu). We suggest that the proofreading mechanism has evolved to attenuate error hot spots in initial selection such as those found here.


Asunto(s)
Bacterias/metabolismo , Codón/metabolismo , Aminoacil-ARN de Transferencia/metabolismo , Ribosomas/metabolismo , Secuencia de Bases , Guanosina Trifosfato/metabolismo , Hidrólisis , Cinética , Datos de Secuencia Molecular , ARN Mensajero/metabolismo
17.
Proc Natl Acad Sci U S A ; 109(1): 131-6, 2012 Jan 03.
Artículo en Inglés | MEDLINE | ID: mdl-22190491

RESUMEN

Rapid and accurate translation of the genetic code into protein is fundamental to life. Yet due to lack of a suitable assay, little is known about the accuracy-determining parameters and their correlation with translational speed. Here, we develop such an assay, based on Mg(2+) concentration changes, to determine maximal accuracy limits for a complete set of single-mismatch codon-anticodon interactions. We found a simple, linear trade-off between efficiency of cognate codon reading and accuracy of tRNA selection. The maximal accuracy was highest for the second codon position and lowest for the third. The results rationalize the existence of proofreading in code reading and have implications for the understanding of tRNA modifications, as well as of translation error-modulating ribosomal mutations and antibiotics. Finally, the results bridge the gap between in vivo and in vitro translation and allow us to calibrate our test tube conditions to represent the environment inside the living cell.


Asunto(s)
Código Genético/genética , Biosíntesis de Proteínas , ARN de Transferencia/genética , Selección Genética , Secuencia de Bases , Codón/genética , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Guanosina Trifosfato/metabolismo , Hidrólisis/efectos de los fármacos , Cinética , Magnesio/farmacología , Modelos Moleculares , Datos de Secuencia Molecular , Biosíntesis de Proteínas/efectos de los fármacos , Ribosomas/efectos de los fármacos , Ribosomas/metabolismo
18.
J Neurosci ; 33(7): 3228-39, 2013 Feb 13.
Artículo en Inglés | MEDLINE | ID: mdl-23407976

RESUMEN

The mammalian main olfactory pathway detects volatile chemicals using two families of G-protein-coupled receptors: a large repertoire of canonical odorant receptors and a much smaller set of trace amine-associated receptors (TAARs). The TAARs are evolutionarily conserved in vertebrates, including humans, suggesting an indispensible role in olfaction. However, little is known about the functional properties of TAARs when expressed in native olfactory sensory neurons. Here we describe experiments using gene targeting, electrophysiology, and optical imaging to study the response properties of TAAR-expressing sensory neurons and their associated glomeruli in mice. We show that olfactory sensory neurons that express a subset of the TAAR repertoire are preferentially responsive to amines. In addition, neurons expressing specific TAARs, TAAR3 or TAAR4, are highly sensitive and are also broadly tuned-responding to structurally diverse amines. Surprisingly, we find that TAAR4 is exquisitely sensitive, with apparent affinities for a preferred ligand, phenylethylamine, rivaling those seen with mammalian pheromone receptors. We provide evidence that this unprecedented sensitivity is mediated via receptor coupling to the canonical odorant transduction cascade. The data suggest that the TAARs are evolutionarily retained in the olfactory receptor repertoire to mediate high-sensitivity detection of a biologically relevant class of odorous stimuli.


Asunto(s)
Aminas/análisis , Receptores Acoplados a Proteínas G/fisiología , Aminas/metabolismo , Animales , Electrofisiología/métodos , Marcación de Gen , Humanos , Masculino , Ratones , Microscopía Fluorescente , Neuroimagen , Odorantes , Bulbo Olfatorio/fisiología , Mucosa Olfatoria/fisiología , Vías Olfatorias/fisiología , Neuronas Receptoras Olfatorias/fisiología , Técnicas de Placa-Clamp , Feromonas/farmacología , Receptores Acoplados a Proteínas G/metabolismo , Transducción de Señal/fisiología
19.
Dalton Trans ; 53(2): 484-492, 2024 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-38084054

RESUMEN

The energy loss (Eloss) caused by inefficient charge transfer and large energy level offset at the buried interface can easily restrict the performance of p-i-n perovskite solar cells (PVSCs). In this study, the utilization of poly-TPD and P3CT-N as a dual-hole transporting layer (HTLs) was implemented in a sequential manner. This approach aimed to improve the charge transfer efficiency of the HTL and mitigate charge recombination at the interface between the HTL and PVK. The results showed that this strategy also could achieve more suitable energy levels, improve the quality of the perovskite film layer, and ultimately enhance the device's stability. IPVSCs employing the dual-HTLs approach exhibited the highest power conversion efficiency of 19.85%, and the open-circuit voltage increased to 1.09 V from 1.00 V. This study offers a straightforward and efficient approach to boost the device performance by minimizing Eloss and reducing the buried interfacial defects. The findings underscore the potential of employing a dual-HTL strategy as a promising pathway for further advancements in PVSCs.

20.
Mol Cell Neurosci ; 51(3-4): 79-88, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22926192

RESUMEN

Sensory information is often mapped systematically in the brain with neighboring neurons responding to similar stimulus features. The olfactory system represents chemical information as spatial and temporal activity patterns across glomeruli in the olfactory bulb. However, the degree to which chemical features are mapped systematically in the glomerular array has remained controversial. Here, we test the hypothesis that the dual roles of odorant receptors, in axon guidance and odor detection, can serve as a mechanism to map olfactory inputs with respect to their function. We compared the relationship between response specificity and glomerular position in genetically-defined olfactory sensory neurons expressing variant odorant receptors. We find that sensory neurons with the same odor response profile can be mapped to different regions of the bulb, and that neurons with different response profiles can be mapped to the same glomeruli. Our data demonstrate that the two functions of odorant receptors can be uncoupled, indicating that the mechanisms that map olfactory sensory inputs to glomeruli do so without regard to stimulus specificity.


Asunto(s)
Bulbo Olfatorio/fisiología , Neuronas Receptoras Olfatorias/fisiología , Potenciales de Acción , Animales , Mapeo Encefálico , Técnicas In Vitro , Ligandos , Ratones , Mutación , Odorantes , Bulbo Olfatorio/citología , Mucosa Olfatoria/fisiología , Neuronas Receptoras Olfatorias/citología , Receptores Odorantes/genética , Receptores Odorantes/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA