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1.
Cell Mol Biol (Noisy-le-grand) ; 63(8): 115-119, 2017 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-28886324

RESUMEN

Acute respiratory infections (ARIs) in children younger than 5 years of age are one of the leading causes of morbidity and mortality, particularly in developing countries. Mycoplasma pneumoniae and Chlamydophila pneumoniae are prevalent causative agents of ARIs, worldwide. We sought M. pneumoniae and C. pneumoniae in respiratory samples from Iranian children with ARIs.  From November 2014 to April 2015, respiratory samples of 150 children aged 1 month to 15 years old were screened for presence of M. pneumoniae and C. pneumoniae. Polymerase chain reaction (PCR) and culture methods were used to detect these bacteria in respiratory samples in the form of throat swabs and nasopharyngeal aspirates. A questionnaire containing demographic and clinical information has been filled up for all participants in this study. Our obtained data showed that out of 150 tested samples, 7 (4.7%) were PCR positive for M. pneumoniae and only one (0.7%) positive sample for C. pneumoniae was detected. However, none of the tested samples was detected M. pneumoniae using the bacterial culture method. All patients with ARIs due to M. pneumoniae showed up with sore throat and flu like symptoms. According to our data, PCR method is more sensitive than culture for detection of M. pneumoniae. With regards to our results, it appears that M. pneumoniae and especially C. pneumoniae were infrequent causative agents in our studied population.


Asunto(s)
Chlamydophila pneumoniae/genética , ADN Bacteriano/genética , Mycoplasma pneumoniae/genética , Infecciones del Sistema Respiratorio/diagnóstico , Adolescente , Niño , Preescolar , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/aislamiento & purificación , Estudios Transversales , Hospitalización/estadística & datos numéricos , Humanos , Lactante , Recién Nacido , Irán , Mycoplasma pneumoniae/clasificación , Mycoplasma pneumoniae/aislamiento & purificación , Nasofaringe/microbiología , Reacción en Cadena de la Polimerasa , Estudios Prospectivos , Infecciones del Sistema Respiratorio/microbiología , Infecciones del Sistema Respiratorio/patología , Encuestas y Cuestionarios
2.
Genomics ; 106(6): 373-83, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26420648

RESUMEN

Chlamydia pneumoniae is an obligate intracellular bacterium implicated in a wide range of human diseases including atherosclerosis and Alzheimer's disease. Efforts to understand the relationships between C. pneumoniae detected in these diseases have been hindered by the availability of sequence data for non-respiratory strains. In this study, we sequenced the whole genomes for C. pneumoniae isolates from atherosclerosis and Alzheimer's disease, and compared these to previously published C. pneumoniae genomes. Phylogenetic analyses of these new C. pneumoniae strains indicate two sub-groups within human C. pneumoniae, and suggest that both recombination and mutation events have driven the evolution of human C. pneumoniae. Further fine-detailed analyses of these new C. pneumoniae sequences show several genetically variable loci. This suggests that similar strains of C. pneumoniae are found in the brain, lungs and cardiovascular system and that only minor genetic differences may contribute to the adaptation of particular strains in human disease.


Asunto(s)
Chlamydophila pneumoniae/genética , Genoma Bacteriano/genética , Genómica/métodos , Análisis de Secuencia de ADN/métodos , Adaptación Fisiológica/genética , Enfermedad de Alzheimer/microbiología , Aterosclerosis/microbiología , Encéfalo/microbiología , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/fisiología , Evolución Molecular , Corazón/microbiología , Interacciones Huésped-Patógeno , Humanos , Mutación , Filogenia , Polimorfismo de Nucleótido Simple , Recombinación Genética , Sistema Respiratorio/microbiología , Especificidad de la Especie
3.
BMC Genomics ; 16: 1094, 2015 Dec 22.
Artículo en Inglés | MEDLINE | ID: mdl-26694618

RESUMEN

BACKGROUND: The obligate intracellular bacterium Chlamydia pneumoniae is a common respiratory pathogen, which has been found in a range of hosts including humans, marsupials and amphibians. Whole genome comparisons of human C. pneumoniae have previously highlighted a highly conserved nucleotide sequence, with minor but key polymorphisms and additional coding capacity when human and animal strains are compared. RESULTS: In this study, we sequenced three Australian human C. pneumoniae strains, two of which were isolated from patients in remote indigenous communities, and compared them to all available C. pneumoniae genomes. Our study demonstrated a phylogenetically distinct human C. pneumoniae clade containing the two indigenous Australian strains, with estimates that the most recent common ancestor of these strains predates the arrival of European settlers to Australia. We describe several polymorphisms characteristic to these strains, some of which are similar in sequence to animal C. pneumoniae strains, as well as evidence to suggest that several recombination events have shaped these distinct strains. CONCLUSIONS: Our study reveals a greater sequence diversity amongst both human and animal C. pneumoniae strains, and suggests that a wider range of strains may be circulating in the human population than current sampling indicates.


Asunto(s)
Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/genética , Genotipo , Filogenia , Secuencia de Aminoácidos , Australia/epidemiología , Secuencia de Bases , Infecciones por Chlamydophila/epidemiología , Análisis por Conglomerados , Evolución Molecular , Orden Génico , Marcadores Genéticos , Variación Genética , Genoma Bacteriano , Humanos , Datos de Secuencia Molecular , Mutagénesis Insercional , Recombinación Genética , Alineación de Secuencia
4.
Emerg Infect Dis ; 21(6): 1049-51, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25988545

RESUMEN

During October 2013-May 2014, there were 102 cases of pneumonia diagnosed in US Air Force Academy cadets. A total of 73% of tested nasal washes contained Chlamydophila pneumoniae. This agent can be considered to be present on campus settings during outbreaks with numerous, seemingly disconnected cases of relatively mild pneumonia.


Asunto(s)
Infecciones por Chlamydophila/epidemiología , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Brotes de Enfermedades , Personal Militar , Neumonía Bacteriana/epidemiología , Neumonía Bacteriana/microbiología , Infecciones por Chlamydophila/diagnóstico , Colorado/epidemiología , Femenino , Humanos , Incidencia , Masculino , Neumonía Bacteriana/diagnóstico , Radiografía Torácica , Estaciones del Año
5.
BMC Microbiol ; 15: 228, 2015 Oct 23.
Artículo en Inglés | MEDLINE | ID: mdl-26494400

RESUMEN

BACKGROUND: Chlamydia pneumoniae is a common human pathogen that is associated with upper and lower respiratory tract infections. It has also been suggested that C. pneumoniae infection can trigger or promote a number of chronic inflammatory conditions, including asthma and atherosclerosis. Several strains of C. pneumoniae have been isolated from humans and animals, and sequence data demonstrates marked genetic conservation, leaving unanswered the question as to why chronic inflammatory conditions may occur following some respiratory-acquired infections. METHODS: C. pneumoniae strains AR39 and AO3 were used in vitro to infect murine bone marrow derived macrophages and L929 fibroblasts, or in vivo to infect C57BL/6 mice via the intranasal route. RESULTS: We undertook a comparative study of a respiratory isolate, AR39, and an atheroma isolate, AO3, to determine if bacterial growth and host responses to infection varied between these two strains. We observed differential growth depending on the host cell type and the growth temperature; however both strains were capable of forming plaques in vitro. The host response to the respiratory isolate was found to be more inflammatory both in vitro, in terms of inflammatory cytokine induction, and in vivo, as measured by clinical response and lung inflammatory markers using a mouse model of respiratory infection. CONCLUSIONS: Our data demonstrates that a subset of C. pneumoniae strains is capable of evading host innate immune defenses during the acute respiratory infection. Further studies on the genetic basis for these differences on both the host and pathogen side could enhance our understanding how C. pneumoniae contributes to the development chronic inflammation at local and distant sites.


Asunto(s)
Infecciones por Chlamydophila/patología , Chlamydophila pneumoniae/aislamiento & purificación , Evasión Inmune , Inmunidad Innata , Macrófagos/inmunología , Placa Aterosclerótica/microbiología , Sistema Respiratorio/microbiología , Animales , Células Cultivadas , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/crecimiento & desarrollo , Chlamydophila pneumoniae/inmunología , Modelos Animales de Enfermedad , Fibroblastos/inmunología , Fibroblastos/microbiología , Humanos , Macrófagos/microbiología , Ratones Endogámicos C57BL
6.
Microbiol Immunol ; 59(9): 507-15, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26215334

RESUMEN

Because many people visit zoos, prevention of zoonoses is important from the standpoint of public health. This study examined the prevalence of Chlamydia among zoo animals in Japan by PCR and characterized these bacteria by performing phylogenetic analyses of the sequences of the variable domain (VD) 2 and VD4 regions of the ompA gene, which encodes the Chlamydia major outer membrane protein. Fecal samples were collected from 1150 zoo animals in five zoos and examined for Chlamydia DNA. Chlamydia psittaci DNA was found in 3.9% of mammals, 7.2% of birds and 8.1% of reptiles. The prevalence of Chlamydia pneumoniae DNA was significantly higher in reptiles (5.8%) than in mammals (0.3%) and birds (0.3%). Phylogenetic analysis of the ompA VD2 region from 18 samples showed that nine were in three different clusters containing C. psittaci strains, six were in a cluster containing C. pneumoniae strains and three each formed a distinct branch. Furthermore, phylogenetic analysis of the ompA VD4 region showed that C. pneumoniae DNAs from reptiles were close to those from human patients. The C. pneumoniae DNAs from the European glass lizard, Emerald tree boa, and Panther chameleon were classified in clusters that were distinct from other strains, suggesting that these reptiles had each been infected with a specific C. pneumoniae genotype. This study showed that diverse Chlamydia strains have been prevalent among a variety of zoo animals.


Asunto(s)
Animales de Zoológico , Infecciones por Chlamydophila/veterinaria , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/genética , Chlamydophila psittaci/clasificación , Chlamydophila psittaci/genética , Animales , Proteínas de la Membrana Bacteriana Externa/genética , Infecciones por Chlamydophila/epidemiología , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/aislamiento & purificación , Chlamydophila psittaci/aislamiento & purificación , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , Heces/microbiología , Variación Genética , Japón , Datos de Secuencia Molecular , Filogenia , Reacción en Cadena de la Polimerasa , Prevalencia , Análisis de Secuencia de ADN , Homología de Secuencia
7.
J Bacteriol ; 196(11): 1915-24, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24682324

RESUMEN

The chlamydiae are obligate intracellular parasites that have evolved specific interactions with their various hosts and host cell types to ensure their successful survival and consequential pathogenesis. The species Chlamydia pneumoniae is ubiquitous, with serological studies showing that most humans are infected at some stage in their lifetime. While most human infections are asymptomatic, C. pneumoniae can cause more-severe respiratory disease and pneumonia and has been linked to chronic diseases such as asthma, atherosclerosis, and even Alzheimer's disease. The widely dispersed animal-adapted C. pneumoniae strains cause an equally wide range of diseases in their hosts. It is emerging that the ability of C. pneumoniae to survive inside its target cells, including evasion of the host's immune attack mechanisms, is linked to the acquisition of key metabolites. Tryptophan and arginine are key checkpoint compounds in this host-parasite battle. Interestingly, the animal strains of C. pneumoniae have a slightly larger genome, enabling them to cope better with metabolite restrictions. It therefore appears that as the evolutionarily more ancient animal strains have evolved to infect humans, they have selectively become more "susceptible" to the levels of key metabolites, such as tryptophan. While this might initially appear to be a weakness, it allows these human C. pneumoniae strains to exquisitely sense host immune attack and respond by rapidly reverting to a persistent phase. During persistence, they reduce their metabolic levels, halting progression of their developmental cycle, waiting until the hostile external conditions have passed before they reemerge.


Asunto(s)
Chlamydophila pneumoniae/metabolismo , Triptófano/metabolismo , Animales , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/genética , Chlamydophila pneumoniae/inmunología , Enfermedad Crónica , Humanos , Especificidad de la Especie
8.
Vestn Ross Akad Med Nauk ; (7): 16-21, 2011.
Artículo en Ruso | MEDLINE | ID: mdl-21899086

RESUMEN

Based on the results of the comparative analysis concerning relatedness and evolutional difference of the 16S - 23S nucleotide sequences of the middle ribosomal cluster and 23S rRNA I domain, and based on identification of phylogenetic position for Chlamydophila pneumoniae and Chlamydia trichomatis strains released from monkeys, relatedness of the above stated isolates with similar strains released from humans and with strains having nucleotide sequences presented in the GenBank electronic database has been detected for the first time ever. Position of these isolates in the Chlamydiaceae family phylogenetic tree has been identified. The evolutional position of the investigated original Chlamydia and Chlamydophila strains close to analogous strains from the GenBank electronic database has been demonstrated. Differences in the 16S - 23S nucleotide sequence of the middle ribosomal cluster and 23S rRNA I domain of plasmid and non-plasmid Chlamydia trachomatis strains released from humans and monkeys relative to different genotype groups (group B- B, Ba, D, Da, E, L1, L2, L2a; intermediate group - F, G, Ga) have been revealed for the first time ever. Abnormality in incA chromosomal gene expression resulting in Chlamydia life and development cycle disorder and decrease of Chlamydia virulence can be related to probable changes in the nucleotide sequence of the gene under consideration.


Asunto(s)
Chlamydia trachomatis/genética , Infecciones por Chlamydophila/genética , Chlamydophila pneumoniae/genética , ARN Ribosómico 16S , ARN Ribosómico 23S , Homología de Secuencia de Ácido Nucleico , Animales , Secuencia de Bases , Chlamydia trachomatis/clasificación , Chlamydia trachomatis/patogenicidad , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/patogenicidad , Evolución Molecular , Haplorrinos , Humanos , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Alineación de Secuencia
9.
Int J Med Sci ; 7(4): 181-90, 2010 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-20596362

RESUMEN

BACKGROUND: Limited body of evidence suggests that lipopolysaccharide of C. pneumoniae as well as C. pneumoniae-specific immune complexes can be detected and isolated from human serum. The aim of this study was to investigate the presence of viable elementary bodies of C.pneumoniae in serum samples of patients with acute coronary syndrome and healthy volunteers. MATERIAL AND METHODS: Serum specimens from 26 healthy volunteers and 56 patients with acute coronary syndrome were examined subsequently by serological (C.pneumoniae-specific IgA and IgG), PCR-based and bacteriological methods. Conventional, nested and TaqMan PCR were used to detect C.pneumoniae genetic markers (ompA and 16S rRNA) in DNA from serum specimens extracted with different methods. An alternative protocol which included culturing high-speed serum sediments in HL cells and further C.pneumoniae growth evaluation with immunofluorescence analysis and TaqMan PCR was established. Pellet fraction of PCR-positive serum specimens was also examined by immunoelectron microscopy. RESULTS: Best efficiency of final PCR product recovery from serum specimens has been shown with specific C. pneumoniae primers using phenol-chloroform DNA extraction protocol. TaqMan PCR analysis revealed that human serum of patients with acute coronary syndrome may contain genetic markers of C. pneumoniae with bacterial load range from 200 to 2000 copies/ml serum. However, reliability and reproducibility of TaqMan PCR were poor for serum specimens with low bacterial copy number (<200 /ml). Combination of bacteriological, immunofluorescence and PCR- based protocols applied for the evaluating HL cells infected with serum sediments revealed that 21.0 % of the patients with acute coronary syndrome have viable forms C.pneumoniae in serum. The detection rate of C.pneumoniae in healthy volunteers was much lower (7.7%). Immunological profile of the patients did not match accurately C.pneumoniae detection rate in serum specimens. Elementary bodies of C.pneumoniae with typical ultrastructural characteristics were also identified in serum sediments using immunoelectron microscopy. CONCLUSIONS: Viable forms C. pneumoniae with typical electron microscopic structure can be identified and isolated from serum specimens of the patients with acute coronary syndrome and some healthy volunteers. Increased detection rate of C. pneumoniae in serum among the patients with an acute coronary syndrome may contribute towards enhanced pro-inflammatory status in cardiovascular patients and development of secondary complications of atherosclerosis.


Asunto(s)
Síndrome Coronario Agudo/microbiología , Chlamydophila pneumoniae/genética , Chlamydophila pneumoniae/aislamiento & purificación , Anciano , Proteínas de la Membrana Bacteriana Externa/genética , Línea Celular , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/ultraestructura , Femenino , Humanos , Masculino , Persona de Mediana Edad , Reacción en Cadena de la Polimerasa , ARN Ribosómico 16S/genética
10.
Infect Dis Obstet Gynecol ; 2010: 130760, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20671971

RESUMEN

Based on the results of the comparative analysis concerning relatedness and evolutional difference of the 16S-23S nucleotide sequences of the middle ribosomal cluster and 23S rRNA I domain, and based on identification of phylogenetic position for Chlamydophila pneumoniae and Chlamydia trichomatis strains released from monkeys, relatedness of the above stated isolates with similar strains released from humans and with strains having nucleotide sequences presented in the GenBank electronic database has been detected for the first time ever. Position of these isolates in the Chlamydiaceae family phylogenetic tree has been identified. The evolutional position of the investigated original Chlamydia and Chlamydophila strains close to analogous strains from the Gen-Bank electronic database has been demonstrated. Differences in the 16S-23S nucleotide sequence of the middle ribosomal cluster and 23S rRNA I domain of plasmid and nonplasmid Chlamydia trachomatis strains released from humans and monkeys relative to different genotype groups (group B-B, Ba, D, Da, E, L1, L2, L2a; intermediate group-F, G, Ga) have been revealed for the first time ever. Abnormality in incA chromosomal gene expression resulting in Chlamydia life development cycle disorder, and decrease of Chlamydia virulence can be related to probable changes in the nucleotide sequence of the gene under consideration.


Asunto(s)
Chlamydia trachomatis/genética , Infecciones por Chlamydiaceae/microbiología , Chlamydiaceae/genética , Chlamydophila pneumoniae/genética , Enfermedades de los Monos/microbiología , Filogenia , Animales , Secuencia de Bases , Chlamydia trachomatis/clasificación , Chlamydia trachomatis/aislamiento & purificación , Chlamydiaceae/clasificación , Chlamydiaceae/aislamiento & purificación , Infecciones por Chlamydiaceae/veterinaria , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/aislamiento & purificación , ADN Bacteriano/genética , ADN Espaciador Ribosómico/análisis , ADN Espaciador Ribosómico/genética , Evolución Molecular , Femenino , Genes de ARNr , Genotipo , Haplorrinos , Humanos , Datos de Secuencia Molecular , Reacción en Cadena de la Polimerasa , ARN Ribosómico 16S/genética , ARN Ribosómico 23S/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico
11.
J Bacteriol ; 191(23): 7225-33, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19749045

RESUMEN

Zoonotic infections are a growing threat to global health. Chlamydia pneumoniae is a major human pathogen that is widespread in human populations, causing acute respiratory disease, and has been associated with chronic disease. C. pneumoniae was first identified solely in human populations; however, its host range now includes other mammals, marsupials, amphibians, and reptiles. Australian koalas (Phascolarctos cinereus) are widely infected with two species of Chlamydia, C. pecorum and C. pneumoniae. Transmission of C. pneumoniae between animals and humans has not been reported; however, two other chlamydial species, C. psittaci and C. abortus, are known zoonotic pathogens. We have sequenced the 1,241,024-bp chromosome and a 7.5-kb cryptic chlamydial plasmid of the koala strain of C. pneumoniae (LPCoLN) using the whole-genome shotgun method. Comparative genomic analysis, including pseudogene and single-nucleotide polymorphism (SNP) distribution, and phylogenetic analysis of conserved genes and SNPs against the human isolates of C. pneumoniae show that the LPCoLN isolate is basal to human isolates. Thus, we propose based on compelling genomic and phylogenetic evidence that humans were originally infected zoonotically by an animal isolate(s) of C. pneumoniae which adapted to humans primarily through the processes of gene decay and plasmid loss, to the point where the animal reservoir is no longer required for transmission.


Asunto(s)
Infecciones por Chlamydia/patología , Chlamydophila pneumoniae/genética , Animales , Infecciones por Chlamydia/genética , Chlamydophila pneumoniae/clasificación , Genoma Bacteriano/genética , Humanos , Datos de Secuencia Molecular , Phascolarctidae/microbiología , Filogenia , Polimorfismo de Nucleótido Simple/genética
12.
BMC Microbiol ; 8: 42, 2008 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-18307777

RESUMEN

BACKGROUND: The obligate intracellular growing bacterium Chlamydia trachomatis causes diseases like trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Several serovars and genotypes have been identified, but these could not be linked to clinical disease or outcome. The related Chlamydophila pneumoniae, of which no subtypes are recognized, causes respiratory infections worldwide. We developed a multi locus sequence typing (MLST) scheme to understand the population genetic structure and diversity of these species and to evaluate the association between genotype and disease. RESULTS: A collection of 26 strains of C. trachomatis of different serovars and clinical presentation and 18 strains of C. pneumoniae were included in the study. For comparison, sequences of C. abortus, C. psittaci, C. caviae, C. felis, C. pecorum (Chlamydophila), C. muridarum (Chlamydia) and of Candidatus protochlamydia and Simkania negevensis were also included. Sequences of fragments (400 - 500 base pairs) from seven housekeeping genes (enoA, fumC, gatA, gidA, hemN, hlfX, oppA) were analysed. Analysis of allelic profiles by eBurst revealed three non-overlapping clonal complexes among the C. trachomatis strains, while the C. pneumoniae strains formed a single group. An UPGMA tree produced from the allelic profiles resulted in three groups of sequence types. The LGV strains grouped in a single cluster, while the urogenital strains were distributed over two separated groups, one consisted solely of strains with frequent occurring serovars (E, D and F). The distribution of the different serovars over the three groups was not consistent, suggesting exchange of serovar encoding ompA sequences. In one instance, exchange of fumC sequences between strains of different groups was observed. Cluster analyses of concatenated sequences of the Chlamydophila and Chlamydia species together with those of Candidatus Protochlamydia amoebophila and Simkania negevensis resulted in a tree identical to that obtained with 23S RNA gene sequences. CONCLUSION: These data show that C. trachomatis and C. pneumoniae are highly uniform. The difference in genetic diversity between C. trachomatis and C. pneumoniae is in concordance with a later assimilation to the human host of the latter. Our data supports the taxonomy of the order of Chlamydiales.


Asunto(s)
Infecciones por Chlamydia/microbiología , Chlamydia trachomatis/clasificación , Genes Bacterianos , Alelos , Chlamydia trachomatis/genética , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/genética , Variación Genética , Humanos , Familia de Multigenes , Filogenia , ARN Bacteriano/genética , ARN Ribosómico 23S/genética , Análisis de Secuencia de ADN
13.
BMC Genomics ; 8: 355, 2007 Oct 04.
Artículo en Inglés | MEDLINE | ID: mdl-17916241

RESUMEN

BACKGROUND: Chlamydophila pneumoniae is an obligate intracellular bacterium that replicates in a biphasic life cycle within eukaryotic host cells. Four published genomes revealed an identity of > 99 %. This remarkable finding raised questions about the existence of distinguishable genotypes in correlation with geographical and anatomical origin. RESULTS: We studied the genetic diversity of C. pneumoniae by analysing synonymous single nucleotide polymorphisms (sSNPs) that are under reduced selection pressure. We conducted an in silico analysis of the four sequenced genomes, chose 232 representative sSNPs and analysed the loci in 38 C. pneumoniae isolates. We identified 15 different genotypes that were separated in four major clusters. Clusters were not associated with anatomical or geographical origin. However, animal lineages are basal on the C. pneumomiae phylogeny, suggesting a recent transmission to humans through successive bottlenecks some 150,000 years ago. A lack of detectable variation in 17 isolates emphasizes the extraordinary genetic conservation of this species and the high clonality of the population. Moreover, the largest cluster, which encompasses 80% of all analysed strains, is an extremely young clade, that went through an important population expansion some 3,300 years ago. CONCLUSION: sSNPs have proven useful as a sensitive marker to gain new insights into genetic diversity, population structure and evolutionary history of C. pneumoniae.


Asunto(s)
Chlamydophila pneumoniae/genética , Genoma Bacteriano , Polimorfismo de Nucleótido Simple , Chlamydophila pneumoniae/clasificación , Filogenia , Reacción en Cadena de la Polimerasa
14.
J Med Microbiol ; 56(Pt 3): 407-417, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17314374

RESUMEN

Chlamydophila pneumoniae is an obligate intracellular respiratory pathogen that has been associated with pneumonia and chronic bronchitis, atherosclerosis, asthma and other chronic diseases in humans. However, C. pneumoniae is not restricted to humans, as originally thought, and can cause infections in several animal hosts. C. pneumoniae was isolated in cell culture from nine Western barred bandicoots (Perameles bougainville) from Australia. The sequences of five genomic regions were determined, including full-length sequences of the 16S rRNA and ompA genes and the ygeD-urk intergenic spacer, and partial sequences of the 23S rRNA and rpoB genes. Sequence analysis of the entire 16S rRNA and ompA genes from bandicoot isolates demonstrated that they were 98.2-98.3% similar to human isolates, 94.6-99.3% similar to the equine biovar and almost identical, with 99.5-99.9% similarity, to the koala biovar. Comparative genotyping of the variable domain 4 region of the ompA gene demonstrated that bandicoot isolates seemed to be identical to the animal genotype that has been recently identified in human carotid plaque specimens. Minor sequence polymorphism observed in ompA, 16S rRNA and rpoB genes of animal isolates, indicating genomic diversity within C. pneumoniae, may have important implications for diagnostic PCR assays leading to false negative results. Forty percent of selected published species-specific PCR assays were found to have sequence variability in primer and/or probe that might affect their performance in detecting bandicoot isolates of C. pneumoniae, or possibly other animal and human strains where minor sequence polymorphisms may be present. The data from this study support the previous observations that C. pneumoniae is not restricted to humans and may be widespread in an animal reservoir with a potential risk of transmission to humans.


Asunto(s)
Infecciones por Chlamydophila/veterinaria , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/aislamiento & purificación , Marsupiales/microbiología , Animales , Animales Salvajes/microbiología , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas Bacterianas/genética , Secuencia de Bases , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/genética , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Intergénico/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Genes de ARNr , Genotipo , Humanos , Datos de Secuencia Molecular , Filogenia , Polimorfismo Genético , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico
15.
Jpn J Infect Dis ; 60(2-3): 97-101, 2007 May.
Artículo en Inglés | MEDLINE | ID: mdl-17515640

RESUMEN

During endemic infections, the sensitivity of diagnostic tests and rapid diagnosis of the respiratory tract pathogens is particularly important. Utilization of just one diagnostic technique, such as serological tests or polymerase chain reaction (PCR)-based detection methods, during outbreaks of lower respiratory tract infections (LRI) can result in some of the patients being missed. In this study we aimed to investigate the etiology of LRI in military recruits in Izmir, Turkey, among whom several pneumonia cases have been reported and 47 patients have been hospitalized. Nasopharyngeal swabs were used for PCR analysis of Chlamydophila pneumoniae, Mycoplasma pneumoniae and Legionella spp. Serum samples were collected in the acute and convalescent phase of infection for C. pneumoniae and M. pneumoniae. Thirty-nine patients were diagnosed with C. pneumoniae infection by PCR and/or serology. Diagnoses were established by PCR in the acute phase of infection in 40.4% of the group. Based on the results of these studies, PCR is a useful method for early detection and identification of C. pneumoniae-related LRI outbreaks. However, this technique is not sufficient to detect all positive cases per se. After effective therapy and introduction of appropriate infection control measures, the outbreak ceased without mortality. This is the first closed-community C. pneumoniae outbreak report from Turkey.


Asunto(s)
Anticuerpos Antibacterianos/sangre , Chlamydophila pneumoniae/genética , Chlamydophila pneumoniae/inmunología , Brotes de Enfermedades , Personal Militar , Infecciones del Sistema Respiratorio , Adulto , Infecciones por Chlamydophila/diagnóstico , Infecciones por Chlamydophila/epidemiología , Infecciones por Chlamydophila/microbiología , Infecciones por Chlamydophila/patología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/aislamiento & purificación , Humanos , Masculino , Reacción en Cadena de la Polimerasa , Infecciones del Sistema Respiratorio/diagnóstico , Infecciones del Sistema Respiratorio/epidemiología , Infecciones del Sistema Respiratorio/microbiología , Infecciones del Sistema Respiratorio/patología , Turquía/epidemiología
16.
Pathog Dis ; 75(4)2017 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-28387800

RESUMEN

Chlamydia pneumoniae is a respiratory pathogen associated with chronic inflammatory diseases such as asthma and atherosclerosis, and its detection in human carotid and coronary atheroma suggests some support for its involvement in atherogenesis. The main objective of our study was to evaluate the association between Chlamydia pneumoniae and atherosclerosis in Moroccan patients through a case-control approach and detected strain genotyping. A total of 137 cases and 124 controls were enrolled, nested PCR was performed for Chlamydia pneumoniae screening of the peripheral blood mononuclear cells (PBMCs) of both cases and controls as well as atheroma plaques from 37 cases, and positive samples were subjected to sequencing for genotyping and phylogenetic analysis. The results showed 54% and 18%, respectively, for positivity in cases and control PBMCs and 86.5% in atheroma plaques, the difference being significant between the two groups (P < 0.001, ORa = 8.580, CI, 95% [3.273-22.491]). Strain sequence analyses showed more than 98% similarity with human reference strains, and revealed various genotypes. This study supports the involvement of Chlamydia pneumoniae in atherosclerosis in the studied population and genotyping revealed that detected strains were identical to human strains circulating worldwide.


Asunto(s)
Aterosclerosis/microbiología , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/genética , ADN Bacteriano/genética , Filogenia , Placa Aterosclerótica/microbiología , Adulto , Anciano , Aterosclerosis/patología , Técnicas de Tipificación Bacteriana , Secuencia de Bases , Estudios de Casos y Controles , Infecciones por Chlamydophila/patología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/aislamiento & purificación , Femenino , Humanos , Leucocitos Mononucleares/metabolismo , Leucocitos Mononucleares/microbiología , Masculino , Persona de Mediana Edad , Marruecos , Placa Aterosclerótica/patología , Alineación de Secuencia , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico
17.
Artículo en Polaco | MEDLINE | ID: mdl-17199102

RESUMEN

Chlamydophila pneumoniae biotype TWAR is classified in the Chlamydiacea family and used to be considered a cause of pneumonia. Lately it has been also proved that it can cause heart disease and diseases of the blood vessels and also take part in the pathogenesis Alzheimer and multiple sclerosis, which shows that biotype TWAR has expanded its spectrum.


Asunto(s)
Enfermedad de Alzheimer/microbiología , Enfermedades Cardiovasculares/microbiología , Infecciones por Chlamydia/microbiología , Chlamydophila pneumoniae/clasificación , Esclerosis Múltiple/microbiología , Neumonía/microbiología , Técnicas de Tipificación Bacteriana , Chlamydophila pneumoniae/aislamiento & purificación , Humanos , Especificidad de la Especie
18.
BMC Bioinformatics ; 6: 171, 2005 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-16011797

RESUMEN

BACKGROUND: Public databases now contain multitude of complete bacterial genomes, including several genomes of the same species. The available data offers new opportunities to address questions about bacterial genome evolution, a task that requires reliable fine comparison data of closely related genomes. Recent analyses have shown, using pairwise whole genome alignments, that it is possible to segment bacterial genomes into a common conserved backbone and strain-specific sequences called loops. RESULTS: Here, we generalize this approach and propose a strategy that allows systematic and non-biased genome segmentation based on multiple genome alignments. Segmentation analyses, as applied to 13 different bacterial species, confirmed the feasibility of our approach to discern the 'mosaic' organization of bacterial genomes. Segmentation results are available through a Web interface permitting functional analysis, extraction and visualization of the backbone/loops structure of documented genomes. To illustrate the potential of this approach, we performed a precise analysis of the mosaic organization of three E. coli strains and functional characterization of the loops. CONCLUSION: The segmentation results including the backbone/loops structure of 13 bacterial species genomes are new and available for use by the scientific community at the URL: http://genome.jouy.inra.fr/mosaic.


Asunto(s)
Bacterias/clasificación , Bacterias/genética , Genoma Bacteriano/genética , Agrobacterium tumefaciens/clasificación , Bacillus cereus/clasificación , Chlamydophila pneumoniae/clasificación , Mapeo Cromosómico/instrumentación , Secuencia Conservada , Bases de Datos Genéticas , Escherichia coli/clasificación , Evolución Molecular , Sistemas de Información/organización & administración , Internet , Alineación de Secuencia , Especificidad de la Especie
19.
Diagn Microbiol Infect Dis ; 52(1): 7-14, 2005 May.
Artículo en Inglés | MEDLINE | ID: mdl-15878436

RESUMEN

Eighty-five cases community-acquired pneumonia (CAP) in children 5 years or younger, confirmed by chest X-ray, and 185 age-matched control patients with diarrhea or dermatitis from the Outpatient Department at Beijing Children's Hospital were enrolled into this study. Nasopharyngeal swab specimens were obtained from all subjects. Real-time PCR-based fluorescence assays were performed for Chlamydia pneumoniae and Mycoplasma pneumoniae. A nested PCR was also run for C. pneumoniae for comparison of assays. C. pneumoniae was found in 3 (3.5%) of CAP cases and in 4 (2.1%) of controls (P = 0.51). M. pneumoniae was found in 6 (7.1%) of CAP cases and in none of the controls (P = 0.001). The agreement rate of the 2 applied PCR methods used for C. pneumoniae detection was 98.5%. Our study demonstrates that M. pneumoniae may play a significant role in CAP affecting children up to 5 years in China, whereas C. pneumoniae in nasopharyngeal specimens was not associated with CAP in this age group.


Asunto(s)
Chlamydophila pneumoniae/aislamiento & purificación , Infecciones Comunitarias Adquiridas/epidemiología , Infecciones Comunitarias Adquiridas/microbiología , Mycoplasma pneumoniae/aislamiento & purificación , Neumonía Bacteriana/epidemiología , Neumonía Bacteriana/microbiología , Preescolar , China/epidemiología , Infecciones por Chlamydophila/epidemiología , Infecciones por Chlamydophila/microbiología , Chlamydophila pneumoniae/clasificación , Chlamydophila pneumoniae/genética , Femenino , Humanos , Lactante , Masculino , Mycoplasma pneumoniae/clasificación , Mycoplasma pneumoniae/genética , Neumonía por Mycoplasma/epidemiología , Neumonía por Mycoplasma/microbiología , Reacción en Cadena de la Polimerasa
20.
Arterioscler Thromb Vasc Biol ; 21(1): E1-8, 2001 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-11145952

RESUMEN

Chlamydia pneumoniae, an intracellular Gram-negative respiratory bacterium, and macrophages are present in inflammatory tissue sites such as atherosclerotic lesions, where abnormal degradation of the extracellular matrix takes place. To evaluate the potential of C pneumoniae for participation in matrix destruction, we studied the effect of this bacterium on the production of 3 matrix-degrading metalloproteinases, 92-kDa gelatinase, interstitial collagenase-1, and stromelysin-1, and their natural inhibitor TIMP-1 (tissue inhibitor of metalloproteinases-1) by human monocyte-derived macrophages differentiated in vitro. Spontaneous production of collagenase and stromelysin by these cells was minimal and was not influenced by C pneumoniae. In contrast, the cells secreted substantial basal quantities of 92-kDa gelatinase, the secretion of which was stimulated (on average, 2.5-fold) by C pneumoniae. C pneumoniae regulated the expression of 92-kDa gelatinase by macrophages at the pretranslational level. Macrophages secreted only small quantities of TIMP-1. The chlamydial proteins Omp2, MOMP, and HSP60 were also found to participate in the induction of 92-kDa gelatinase by C pneumoniae. Denaturation of chlamydial proteins by boiling reduced 92-kDa gelatinase secretion only partially (by 35%), suggesting that the heat-stabile lipopolysaccharide molecules also stimulate secretion of the enzyme. The results show that production of 92-kDa gelatinase by human macrophages is selectively upregulated by C pneumoniae, which suggests that these bacteria, when present in a macrophage-containing inflammatory environment, actively participate in the destruction of the extracellular matrix.


Asunto(s)
Antígenos Bacterianos , Proteínas Bacterianas/fisiología , Chlamydophila pneumoniae/fisiología , Gelatinasas/metabolismo , Macrófagos/enzimología , Macrófagos/microbiología , Monocitos/enzimología , Monocitos/microbiología , Proteínas de la Membrana Bacteriana Externa/fisiología , Diferenciación Celular , Células Cultivadas , Chaperonina 60/fisiología , Chlamydophila pneumoniae/clasificación , Electroforesis en Gel de Poliacrilamida , Gelatinasas/biosíntesis , Gelatinasas/genética , Regulación Bacteriana de la Expresión Génica , Calor , Humanos , Macrófagos/citología , Proteínas de la Membrana/fisiología , Monocitos/citología , Biosíntesis de Proteínas , Serotipificación , Factores de Tiempo
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