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The genome of Eucalyptus grandis.
Myburg, Alexander A; Grattapaglia, Dario; Tuskan, Gerald A; Hellsten, Uffe; Hayes, Richard D; Grimwood, Jane; Jenkins, Jerry; Lindquist, Erika; Tice, Hope; Bauer, Diane; Goodstein, David M; Dubchak, Inna; Poliakov, Alexandre; Mizrachi, Eshchar; Kullan, Anand R K; Hussey, Steven G; Pinard, Desre; van der Merwe, Karen; Singh, Pooja; van Jaarsveld, Ida; Silva-Junior, Orzenil B; Togawa, Roberto C; Pappas, Marilia R; Faria, Danielle A; Sansaloni, Carolina P; Petroli, Cesar D; Yang, Xiaohan; Ranjan, Priya; Tschaplinski, Timothy J; Ye, Chu-Yu; Li, Ting; Sterck, Lieven; Vanneste, Kevin; Murat, Florent; Soler, Marçal; Clemente, Hélène San; Saidi, Naijib; Cassan-Wang, Hua; Dunand, Christophe; Hefer, Charles A; Bornberg-Bauer, Erich; Kersting, Anna R; Vining, Kelly; Amarasinghe, Vindhya; Ranik, Martin; Naithani, Sushma; Elser, Justin; Boyd, Alexander E; Liston, Aaron; Spatafora, Joseph W.
Afiliación
  • Myburg AA; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Grattapaglia D; 1] Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil [2] Programa de Ciências Genômicas e Biotecnologia - Universidade Católica de Brasília SGAN 916, 70790-160 Brasília, Brazil.
  • Tuskan GA; 1] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [2] Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Hellsten U; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Hayes RD; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Grimwood J; HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.
  • Jenkins J; HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.
  • Lindquist E; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Tice H; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Bauer D; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Goodstein DM; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Dubchak I; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Poliakov A; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA.
  • Mizrachi E; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Kullan AR; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Hussey SG; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Pinard D; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • van der Merwe K; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Singh P; 1] Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • van Jaarsveld I; Bioinformatics and Computational Biology Unit, Department of Biochemistry, University of Pretoria, Pretoria, Private bag X20, Pretoria 0028, South Africa.
  • Silva-Junior OB; Laboratório de Bioinformática, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Togawa RC; Laboratório de Bioinformática, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Pappas MR; Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Faria DA; Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Sansaloni CP; Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Petroli CD; Laboratório de Genética Vegetal, EMBRAPA Recursos Genéticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasília, Brazil.
  • Yang X; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Ranjan P; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Tschaplinski TJ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Ye CY; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Li T; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
  • Sterck L; Department of Plant Biotechnology and Bioinformatics (VIB), Ghent University, Technologiepark 927, B-9000 Ghent, Belgium.
  • Vanneste K; Department of Plant Biotechnology and Bioinformatics (VIB), Ghent University, Technologiepark 927, B-9000 Ghent, Belgium.
  • Murat F; INRA/UBP UMR 1095, 5 Avenue de Beaulieu, 63100 Clermont Ferrand, France.
  • Soler M; Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
  • Clemente HS; Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
  • Saidi N; Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
  • Cassan-Wang H; Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
  • Dunand C; Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Toulouse III, UPS, CNRS, BP 42617, 31326 Castanet Tolosan, France.
  • Hefer CA; 1] Bioinformatics and Computational Biology Unit, Department of Biochemistry, University of Pretoria, Pretoria, Private bag X20, Pretoria 0028, South Africa [2] Department of Botany, University of British Columbia, 3529-6270 University Blvd, Vancouver V6T 1Z4, Canada.
  • Bornberg-Bauer E; Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D-48149, Muenster, Germany.
  • Kersting AR; 1] Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D-48149, Muenster, Germany [2] Department of Bioinformatics, Institute for Computer Science, University of Duesseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany.
  • Vining K; Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
  • Amarasinghe V; Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
  • Ranik M; Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331, USA.
  • Naithani S; 1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
  • Elser J; Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA.
  • Boyd AE; Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
  • Liston A; 1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
  • Spatafora JW; 1] Department of Botany and Plant Pathology, Oregon State University, 2082-Cordley Hall, Corvallis, Oregon 97331, USA [2] Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA.
Nature ; 510(7505): 356-62, 2014 Jun 19.
Article en En | MEDLINE | ID: mdl-24919147
ABSTRACT
Eucalypts are the world's most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes. Eucalyptus also shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils. Genome sequencing of the E. grandis sister species E. globulus and a set of inbred E. grandis tree genomes reveals dynamic genome evolution and hotspots of inbreeding depression. The E. grandis genome is the first reference for the eudicot order Myrtales and is placed here sister to the eurosids. This resource expands our understanding of the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.
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Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Genoma de Planta / Eucalyptus Idioma: En Revista: Nature Año: 2014 Tipo del documento: Article País de afiliación: Sudáfrica
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Genoma de Planta / Eucalyptus Idioma: En Revista: Nature Año: 2014 Tipo del documento: Article País de afiliación: Sudáfrica