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1.

HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia.

Galbraith, Matthew D; Allen, Mary A; Bensard, Claire L; Wang, Xiaoxing; Schwinn, Marie K; Qin, Bo; Long, Henry W; Daniels, Danette L; Hahn, William C; Dowell, Robin D; Espinosa, Joaquín M.

Cell ; 153(6): 1327-39, 2013 Jun 06.

Article in English | MEDLINE | ID: mdl-23746844

2.

Macrophages derived from human induced pluripotent stem cells (iPSCs) serve as a high-fidelity cellular model for investigating HIV-1, dengue, and influenza viruses.

Yang, Qing; Barbachano-Guerrero, Arturo; Fairchild, Laurence M; Rowland, Teisha J; Dowell, Robin D; Allen, Mary A; Warren, Cody J; Sawyer, Sara L.

J Virol ; 98(3): e0156323, 2024 Mar 19.

Article in English | MEDLINE | ID: mdl-38323811

3.

HIV Diagnostics and Vaccines: It Takes Two to Tango.

Colón, Will; Oriol Mathieu, Valérie; Hural, John; Hattingh, Lucy; Adungo, Ferdinard; Lagatie, Ole; Lavreys, Ludo; Allen, Mary; Anzala, Omu; Espy, Nicole; Fransen, Katrien; Garcia, Patricia J; Maciel, Milton; Murtagh, Maurine; Peel, Sheila A; Peeling, Rosanna W; Tan, Litjen L J; Warren, Mitchell; Pau, Maria Grazia; D'Souza, Patricia M.

J Infect Dis ; 2024 Mar 07.

Article in English | MEDLINE | ID: mdl-38451247

4.

Vaccine Efficacy of ALVAC-HIV and Bivalent Subtype C gp120-MF59 in Adults.

Gray, Glenda E; Bekker, Linda-Gail; Laher, Fatima; Malahleha, Mookho; Allen, Mary; Moodie, Zoe; Grunenberg, Nicole; Huang, Yunda; Grove, Doug; Prigmore, Brittany; Kee, Jia J; Benkeser, David; Hural, John; Innes, Craig; Lazarus, Erica; Meintjes, Graeme; Naicker, Nivashnee; Kalonji, Dishiki; Nchabeleng, Maphoshane; Sebe, Modulakgotla; Singh, Nishanta; Kotze, Philip; Kassim, Sheetal; Dubula, Thozama; Naicker, Vimla; Brumskine, William; Ncayiya, Cleon N; Ward, Amy M; Garrett, Nigel; Kistnasami, Girisha; Gaffoor, Zakir; Selepe, Pearl; Makhoba, Philisiwe B; Mathebula, Matsontso P; Mda, Pamela; Adonis, Tania; Mapetla, Katlego S; Modibedi, Bontle; Philip, Tricia; Kobane, Gladys; Bentley, Carter; Ramirez, Shelly; Takuva, Simbarashe; Jones, Megan; Sikhosana, Mpho; Atujuna, Millicent; Andrasik, Michele; Hejazi, Nima S; Puren, Adrian; Wiesner, Lubbe.

N Engl J Med ; 384(12): 1089-1100, 2021 03 25.

Article in English | MEDLINE | ID: mdl-33761206

5.

RUN(X) out of blood: emerging RUNX1 functions beyond hematopoiesis and links to Down syndrome.

Rozen, Esteban J; Ozeroff, Christopher D; Allen, Mary Ann.

Hum Genomics ; 17(1): 83, 2023 09 05.

Article in English | MEDLINE | ID: mdl-37670378

6.

The ENGAGE study: a 3-arm randomized hybrid type 1 effectiveness and implementation study of an in-home, collaborative PCP model of remote telegenetic services to increase uptake of cancer genetic services in childhood cancer survivors.

Henderson, Tara O; Allen, Mary Ashley; Mim, Rajia; Egleston, Brian; Fleisher, Linda; Elkin, Elena; Oeffinger, Kevin; Krull, Kevin; Ofidis, Demetrios; Mcleod, Briana; Griffin, Hannah; Wood, Elizabeth; Cacioppo, Cara; Weinberg, Michelle; Brown, Sarah; Howe, Sarah; McDonald, Aaron; Vukadinovich, Chris; Alston, Shani; Rinehart, Dayton; Armstrong, Gregory T; Bradbury, Angela R.

BMC Health Serv Res ; 24(1): 253, 2024 Feb 28.

Article in English | MEDLINE | ID: mdl-38414045

7.

Transcription dosage compensation does not occur in Down syndrome.

Hunter, Samuel; Hendrix, Jo; Freeman, Justin; Dowell, Robin D; Allen, Mary A.

BMC Biol ; 21(1): 228, 2023 11 10.

Article in English | MEDLINE | ID: mdl-37946204

8.

Data quality in an HIV vaccine efficacy clinical trial in South Africa: through natural disasters and with discipline.

Laher, Fatima; Malahleha, Mookho; Ramirez, Shelly; Brumskine, William; Otwombe, Kennedy; Moodie, Zoe; Allen, Mary.

BMC Med Res Methodol ; 23(1): 147, 2023 06 24.

Article in English | MEDLINE | ID: mdl-37355583

9.

Use of Varied Screening Risk Criteria and HIV Incidence in Phase 1 and 2 HIV Vaccine Trials in South Africa.

Laher, Fatima; Otwombe, Kennedy; Mokwena, Ofentse; Bekker, Linda-Gail; Allen, Mary.

AIDS Behav ; 27(4): 1314-1320, 2023 Apr.

Article in English | MEDLINE | ID: mdl-36287343

10.

Risk Factors Associated with HIV Acquisition in Males Participating in HIV Vaccine Efficacy Trials in South Africa.

Malahleha, Mookho; Laher, Fatima; Dilraj, Athmanundh; Smith, Philip; Gray, Glenda E; Grove, Doug; Odhiambo, Jackline A; Andrasik, Michele P; Grunenberg, Nicole A; Moodie, Zoe; Huang, Yunda; Borate, Bhavesh R; Gillespie, Kevin M; Allen, Mary; Atujuna, Millicent; Singh, Nishanta; Kalonji, Dishiki; Meintjes, Graeme; Kotze, Phillip; Bekker, Linda-Gail; Janes, Holly.

AIDS Behav ; 27(9): 3027-3037, 2023 Sep.

Article in English | MEDLINE | ID: mdl-36929319

11.

Analysis of the HIV Vaccine Trials Network 702 Phase 2b-3 HIV-1 Vaccine Trial in South Africa Assessing RV144 Antibody and T-Cell Correlates of HIV-1 Acquisition Risk.

Moodie, Zoe; Dintwe, One; Sawant, Sheetal; Grove, Doug; Huang, Yunda; Janes, Holly; Heptinstall, Jack; Omar, Faatima Laher; Cohen, Kristen; De Rosa, Stephen C; Zhang, Lu; Yates, Nicole L; Sarzotti-Kelsoe, Marcella; Seaton, Kelly E; Laher, Fatima; Bekker, Linda Gail; Malahleha, Mookho; Innes, Craig; Kassim, Sheetal; Naicker, Nivashnee; Govender, Vaneshree; Sebe, Modulakgotla; Singh, Nishanta; Kotze, Philip; Lazarus, Erica; Nchabeleng, Maphoshane; Ward, Amy M; Brumskine, William; Dubula, Thozama; Randhawa, April K; Grunenberg, Nicole; Hural, John; Kee, Jia Jin; Benkeser, David; Jin, Yutong; Carpp, Lindsay N; Allen, Mary; D'Souza, Patricia; Tartaglia, James; DiazGranados, Carlos A; Koutsoukos, Marguerite; Gilbert, Peter B; Kublin, James G; Corey, Lawrence; Andersen-Nissen, Erica; Gray, Glenda E; Tomaras, Georgia D; McElrath, M Juliana.

J Infect Dis ; 226(2): 246-257, 2022 08 24.

Article in English | MEDLINE | ID: mdl-35758878

12.

Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries.

Hunter, Samuel; Sigauke, Rutendo F; Stanley, Jacob T; Allen, Mary A; Dowell, Robin D.

BMC Genomics ; 23(1): 187, 2022 Mar 07.

Article in English | MEDLINE | ID: mdl-35255806

13.

Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression.

Sasse, Sarah K; Gruca, Margaret; Allen, Mary A; Kadiyala, Vineela; Song, Tengyao; Gally, Fabienne; Gupta, Arnav; Pufall, Miles A; Dowell, Robin D; Gerber, Anthony N.

Genome Res ; 29(11): 1753-1765, 2019 11.

Article in English | MEDLINE | ID: mdl-31519741

14.

Characterization of Global Gene Expression, Regulation of Metal Ions, and Infection Outcomes in Immune-Competent 129S6 Mouse Macrophages.

Janiszewski, Lara N; Minson, Michael; Allen, Mary A; Dowell, Robin D; Palmer, Amy E.

Infect Immun ; 89(11): e0027321, 2021 10 15.

Article in English | MEDLINE | ID: mdl-34370511

15.

Enhancer RNA profiling predicts transcription factor activity.

Azofeifa, Joseph G; Allen, Mary A; Hendrix, Josephina R; Read, Timothy; Rubin, Jonathan D; Dowell, Robin D.

Genome Res ; 2018 Feb 15.

Article in English | MEDLINE | ID: mdl-29449408

16.

A retrospective analysis of incident pregnancy in phase 1 and 2a HIV-1 vaccine study participants does not support concern for adverse pregnancy or birth outcomes.

Stranix-Chibanda, Lynda; Yu, Chenchen; Isaacs, Margaret Brewinski; Allen, Mary; Andriesen, Jessica; Walsh, Stephen R.

BMC Infect Dis ; 21(1): 802, 2021 Aug 11.

Article in English | MEDLINE | ID: mdl-34380464

17.

Antibody and cellular responses to HIV vaccine regimens with DNA plasmid as compared with ALVAC priming: An analysis of two randomized controlled trials.

Moodie, Zoe; Walsh, Stephen R; Laher, Fatima; Maganga, Lucas; Herce, Michael E; Naidoo, Sarita; Hosseinipour, Mina C; Innes, Craig; Bekker, Linda-Gail; Grunenberg, Nicole; Mann, Philipp; Yu, Chenchen; deCamp, Allan C; Miner, Maurine D; Yates, Nicole L; Heptinstall, Jack; Mkhize, Nonhlanhla N; Dintwe, One; Frahm, Nicole; Cohen, Kristen W; Allen, Mary; Hutter, Julia; Wagner, Ralf; Pantaleo, Giuseppe; McElrath, M Juliana; Tomaras, Georgia D; Morris, Lynn; Montefiori, David C; Andersen-Nissen, Erica; Gray, Glenda E; Gilbert, Peter B; Kublin, James G.

PLoS Med ; 17(5): e1003117, 2020 05.

Article in English | MEDLINE | ID: mdl-32442195

18.

Safety and immune responses after a 12-month booster in healthy HIV-uninfected adults in HVTN 100 in South Africa: A randomized double-blind placebo-controlled trial of ALVAC-HIV (vCP2438) and bivalent subtype C gp120/MF59 vaccines.

Laher, Fatima; Moodie, Zoe; Cohen, Kristen W; Grunenberg, Nicole; Bekker, Linda-Gail; Allen, Mary; Frahm, Nicole; Yates, Nicole L; Morris, Lynn; Malahleha, Mookho; Mngadi, Kathryn; Daniels, Brodie; Innes, Craig; Saunders, Kevin; Grant, Shannon; Yu, Chenchen; Gilbert, Peter B; Phogat, Sanjay; DiazGranados, Carlos A; Koutsoukos, Marguerite; Van Der Meeren, Olivier; Bentley, Carter; Mkhize, Nonhlanhla N; Pensiero, Michael N; Mehra, Vijay L; Kublin, James G; Corey, Lawrence; Montefiori, David C; Gray, Glenda E; McElrath, M Juliana; Tomaras, Georgia D.

PLoS Med ; 17(2): e1003038, 2020 02.

Article in English | MEDLINE | ID: mdl-32092060

19.

Train students to navigate ethical swamps.

Allen, Mary A.

Nature ; 568(7751): 145, 2019 04.

Article in English | MEDLINE | ID: mdl-30971841

20.

Updated Methods for the Production of Toxorhynchites rutilus septentrionalis (Diptera, Culicidae) for Use as Biocontrol Agent Against Container Breeding Pest Mosquitoes in Harris County, Texas.

Schiller, Anita; Allen, Mary; Coffey, Jewel; Fike, Arielle; Carballo, Franklin.

J Insect Sci ; 19(2)2019 Mar 01.

Article in English | MEDLINE | ID: mdl-30843583

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