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1.
Environ Res ; 247: 118127, 2024 Apr 15.
Article in English | MEDLINE | ID: mdl-38220075

ABSTRACT

Remediating inorganic pollutants is an important part of protecting coastal ecosystems, which are especially at risk from the effects of climate change. Different Phragmites karka (Retz) Trin. ex Steud ecotypes were gathered from a variety of environments, and their abilities to remove inorganic contaminants from coastal wetlands were assessed. The goal is to learn how these ecotypes process innovation might help reduce the negative impacts of climate change on coastal environments. The Phragmites karka ecotype E1, found in a coastal environment in Ichkera that was impacted by residential wastewater, has higher biomass production and photosynthetic pigment content than the Phragmites karka ecotypes E2 (Kalsh) and E3 (Gatwala). Osmoprotectant accumulation was similar across ecotypes, suggesting that all were able to successfully adapt to polluted marine environments. The levels of both total soluble sugars and proteins were highest in E2. The amount of glycine betaine (GB) rose across the board, with the highest levels being found in the E3 ecotype. The study also demonstrated that differing coastal habitats significantly influenced the antioxidant activity of all ecotypes, with E1 displaying the lowest superoxide dismutase (SOD) activity, while E2 exhibited the lowest peroxidase (POD) and catalase (CAT) activities. Significant morphological changes were evident in E3, such as an expansion of the phloem, vascular bundle, and metaxylem cell areas. When compared to the E3 ecotype, the E1 and E2 ecotypes showed striking improvements across the board in leaf anatomy. Mechanistic links between architectural and physio-biochemical alterations are crucial to the ecological survival of different ecotypes of Phragmites karka in coastal environments affected by climate change. Their robustness and capacity to reduce pollution can help coastal ecosystems endure in the face of persistent climate change.


Subject(s)
Ecosystem , Ecotype , Climate Change , Poaceae/chemistry , Poaceae/metabolism , Biomass , Antioxidants/metabolism
2.
Appl Microbiol Biotechnol ; 108(1): 150, 2024 Jan 19.
Article in English | MEDLINE | ID: mdl-38240838

ABSTRACT

The evolution and rapid spread of multidrug-resistant (MDR) bacterial pathogens have become a major concern for human health and demand the development of alternative antimicrobial agents to combat this emergent threat. Conventional intracellular methods for producing metal nanoparticles (NPs) using whole-cell microorganisms have limitations, including binding of NPs to cellular components, potential product loss, and environmental contamination. In contrast, this study introduces a green, extracellular, and sustainable methodology for the bio-materialization of silver NPs (AgNPs) using renewable resource cell-free yeast extract. These extracts serve as a sustainable, biogenic route for both reducing the metal precursor and stabilizing the surface of AgNPs. This method offers several advantages such as cost-effectiveness, environment-friendliness, ease of synthesis, and scalability. HR-TEM imaging of the biosynthesized AgNPs revealed an isotropic growth route, resulting in an average size of about ~ 18 nm and shapes ranging from spherical to oval. Further characterization by FTIR and XPS results revealed various functional groups, including carboxyl, hydroxyl, and amide contribute to enhanced colloidal stability. AgNPs exhibited potent antibacterial activity against tested MDR strains, showing particularly high efficacy against Gram-negative bacteria. These findings suggest their potential role in developing alternative treatments to address the growing threat of antimicrobial resistance. Additionally, seed priming experiments demonstrated that pre-sowing treatment with AgNPs improves both the germination rate and survival of Sorghum jowar and Zea mays seedlings. KEY POINTS: •Yeast extract enables efficient, cost-effective, and eco-friendly AgNP synthesis. •Biosynthesized AgNPs showed strong antibacterial activity against MDR bacteria. •AgNPs boost seed germination and protect against seed-borne diseases.


Subject(s)
Metal Nanoparticles , Silver , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Metal Nanoparticles/chemistry , Plant Extracts/pharmacology , Plant Extracts/chemistry , Seeds , Silver/pharmacology , Silver/chemistry , Spectroscopy, Fourier Transform Infrared
3.
Environ Res ; 216(Pt 3): 114741, 2023 01 01.
Article in English | MEDLINE | ID: mdl-36347394

ABSTRACT

Nowadays, fast-growing industrialization has resulted in the release of enormous amounts of contaminants such as toxic dyes into water bodies and leading to cause health and environmental risks. In this regard, we prepared inorganic nanocomposites for the treatment of toxic dyes. Hence, we synthesized TiO2/PAni/GO nanocomposites and examined them by using XRD, SEM, TEM, UV-Vis spectroscopy, BET analysis, and a photoluminescence investigation. In addition, band gap energies of the nanocomposites were determined, and Total Organic Carbon (TOC) testing was used to determine dye degradation levels. The photocatalytic degradations of Thymol Blue and Rose Bengal dyes were investigated at different dye concentrations, illumination periods, solution pH values, and photocatalyst dosages. By using TiO2/PAni/GO, TiO2/PAni, and TiO2 at neutral pH, a photocatalyst dose of 1600 mg/L, and exposure to visible light, Thymol Blue and Rose Bengal were photodegraded 85-99%, 60-97%, and 10-20%, respectively, at a concentration of 25 ppm (180 min). Reductions in the TOCs confirmed their photodegradation, and a kinetic study revealed photodegradation followed first-order kinetics. This study shows the coating of polyaniline (PAni) and graphene oxide (GO) on TiO2 improved its ability to photodegrade Thymol Blue and Rose Bengal dye.


Subject(s)
Nanocomposites , Water Pollutants, Chemical , Photolysis , Coloring Agents , Rose Bengal , Water Pollutants, Chemical/analysis , Nanocomposites/chemistry , Light
4.
Arch Pharm (Weinheim) ; 356(11): e2300430, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37718357

ABSTRACT

Alzheimer's disease (AD) presents a multifactorial neurological disorder with multiple enzyme involvement in its onset. Conventional monotherapies fall short in providing long-term relief, necessitating the exploration of alternative multitargeting approaches to address the complexity of AD. Therefore, the design, synthesis, and in vitro and in silico evaluation of 2-oxoquinoline-based thiosemicarbazones 9a-r as multipotent analogs, able to simultaneously inhibit the cholinesterase (ChE) and monoamine oxidase (MAO) enzymes for the potential treatment of AD, are reported. In the in vitro experimental evaluation of MAO and ChE inhibition, all tested compounds demonstrated remarkable potency exhibiting nonselective inhibition of both MAO-A and MAO-B, and selective inhibition of acetylcholinesterase (AChE) over butyrylcholinesterase (BChE), with 9d, 9j, and 9m evolving as lead compounds for MAO-A, MAO-B, and AChE, displaying IC50 values of 0.35 ± 0.92, 0.50 ± 0.02, and 0.25 ± 0.13 µM, respectively. Moreover, the kinetic studies revealed that all tested compounds inhibited all three enzymes through a competitive mode of inhibition. Furthermore, the molecular docking studies of the most active compounds revealed several crucial interactions, particularly hydrogen bonding interactions. These interactions were observed between the nitrogen and sulfur atoms of thiosemicarbazone and the nitrogen and oxygen atoms of the quinoline ring with various amino acids, suggesting the strong interactions of these compounds with the enzymes.


Subject(s)
Alzheimer Disease , Quinolones , Thiosemicarbazones , Humans , Cholinesterase Inhibitors/chemistry , Monoamine Oxidase/metabolism , Alzheimer Disease/drug therapy , Butyrylcholinesterase/metabolism , Acetylcholinesterase/metabolism , Monoamine Oxidase Inhibitors/chemistry , Molecular Docking Simulation , Thiosemicarbazones/pharmacology , Kinetics , Structure-Activity Relationship , Nitrogen
5.
J Environ Manage ; 326(Pt A): 116615, 2023 Jan 15.
Article in English | MEDLINE | ID: mdl-36395641

ABSTRACT

Novel ZnS-Cu7S4 nanohybrid supported on chitosan matrix, as an ideal photocatalyst, was fabricated by the sonochemical method wherein high-resolution transmission electron microscopy (HRTEM) and X-ray powder diffraction (XRD) analysis confirmed the co-existence of both ZnS and Cu7S4; presence of vacancy sites in ZnS was verified by electron paramagnetic resonance (EPR) analysis and their introduction could promote two-photon excitation facilitated visible light response and charge transport/separation. The type II interface is formed in the ZnS-Cu7S4/Chitosan heterojunction owing to interstitial states that promote charge separation. The ZnS-Cu7S4/Chitosan was used for the photodegradation of a pharmaceutical pollutant, p-chlorophenol (PCP); over 98.8% of PCP photodegradation was achieved under visible-light irradiation where the ensued ·O2- and ·OH serve a key role in the photodegradation of PCP. In vitro cytotoxicity studies substantiated that the ZnS-Cu7S4/Chitosan is nontoxic to the ecosystem and human beings and endowed with promising photodegradation properties and accessibility via an environmentally friendly design, bodes well for its potential remediation applications.


Subject(s)
Chitosan , Humans , Photolysis , Ecosystem
6.
Bioorg Chem ; 107: 104626, 2021 02.
Article in English | MEDLINE | ID: mdl-33450545

ABSTRACT

Vincamine, a well-known plant alkaloid, has been used as a dietary supplement and as a peripheral vasodilator to combat aging in humans. In this study, for the very first time, we demonstrated that vincamine can function as an anticancer agent in a human alveolar basal epithelial cell line A549 (IC50 = 309.7 µM). The anticancer potential of vincamine in A549 cells was assessed by molecular assays to determine cell viability, generation of intracellular ROS, nuclear condensation, caspase-3 activity and inhibition, and change in mitochondrial membrane potential (ΔΨm). In silico studies predicted that the anti-proliferative potential of vincamine is enhanced by its interaction with the apoptotic protein caspase-3, and that this interaction is driven by two hydrogen bonds and has a high free energy of binding (-5.64 kcal/mol) with an estimated association constant (Ka) of 73.67 µM. We found that vincamine stimulated caspase-3-dependent apoptosis and lowered mitochondrial membrane potential, which ultimately led to cytochrome C release. Vincamine was also found to quench hydroxyl free radicals and deplete iron ions in cancer cells. As a dietary supplement, vincamine is almost non-toxic in BEAS-2B and 3T3-L1 cells. Therefore, we propose that vincamine represents a safe anticancer agent in lung cancer cells. Its role in other cancers has yet to be explored.


Subject(s)
Antineoplastic Agents/chemistry , A549 Cells , Alkaloids/chemistry , Alkaloids/pharmacology , Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Binding Sites , Caspase 3/chemistry , Caspase 3/metabolism , Caspase Inhibitors/pharmacology , Catalytic Domain , Cell Survival/drug effects , Humans , Kinetics , Membrane Potential, Mitochondrial/drug effects , Molecular Docking Simulation , Reactive Oxygen Species/metabolism , Thermodynamics , Vincamine/chemistry , Vincamine/pharmacology
7.
Molecules ; 26(19)2021 Sep 23.
Article in English | MEDLINE | ID: mdl-34641304

ABSTRACT

The current research work illustrates an economical and rapid approach towards the biogenic synthesis of silver nanoparticles using aqueous Punica granatum leaves extract (PGL-AgNPs). The optimization of major parameters involved in the biosynthesis process was done using Box-Behnken Design (BBD). The effects of different independent variables (parameters), namely concentration of AgNO3, temperature and ratio of extract to AgNO3, on response viz. particle size and polydispersity index were analyzed. As a result of experiment designing, 17 reactions were generated, which were further validated experimentally. The statistical and mathematical approaches were employed on these reactions in order to interpret the relationship between the factors and responses. The biosynthesized nanoparticles were initially characterized by UV-vis spectrophotometry followed by physicochemical analysis for determination of particle size, polydispersity index and zeta potential via dynamic light scattering (DLS), SEM and EDX studies. Moreover, the determination of the functional group present in the leaves extract and PGL-AgNPs was done by FTIR. Antibacterial and antibiofilm efficacies of PGL-AgNPs against Gram-positive and Gram-negative bacteria were further determined. The physicochemical studies suggested that PGL-AgNPs were round in shape and of ~37.5 nm in size with uniform distribution. Our studies suggested that PGL-AgNPs exhibit potent antibacterial and antibiofilm properties.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gram-Negative Bacteria/physiology , Gram-Positive Bacteria/physiology , Pomegranate/chemistry , Silver Nitrate/pharmacology , Anti-Bacterial Agents/chemistry , Biofilms/drug effects , Gram-Negative Bacteria/drug effects , Gram-Positive Bacteria/drug effects , Metal Nanoparticles , Microbial Sensitivity Tests , Particle Size , Plant Extracts/chemistry , Plant Extracts/pharmacology , Plant Leaves/chemistry , Silver Nitrate/chemistry
8.
Molecules ; 26(15)2021 Jul 29.
Article in English | MEDLINE | ID: mdl-34361745

ABSTRACT

The edible parts of the plants Camellia sinensis, Vitis vinifera and Withania somnifera were extensively used in ancient practices such as Ayurveda, owing to their potent biomedical significance. They are very rich in secondary metabolites such as polyphenols, which are very good antioxidants and exhibit anti-carcinogenic properties. This study aims to evaluate the anti-cancerous properties of these plant crude extracts on human liver cancer HepG2 cells. The leaves of Camellia sinensis, Withania somnifera and the seeds of Vitis vinifera were collected and methanolic extracts were prepared. Then, these extracts were subjected to DPPH, α- amylase assays to determine the antioxidant properties. A MTT assay was performed to investigate the viability of the extracts of HepG2 cells, and the mode of cell death was detected by Ao/EtBr staining and flow cytometry with PI Annexin- V FITC dual staining. Then, the protein expression of BAX and BCl2 was studied using fluorescent dye to determine the regulation of the BAX and BCl2 genes. We observed that all the three extracts showed the presence of bioactive compounds such as polyphenols or phytochemicals. The W. somnifera bioactive compounds were found to have the highest anti-proliferative activity on human liver cancer cells.


Subject(s)
Antineoplastic Agents, Phytogenic/pharmacology , Antioxidants/pharmacology , Camellia sinensis/chemistry , Gene Expression Regulation, Neoplastic/drug effects , Vitis/chemistry , Withania/chemistry , Alkaloids/chemistry , Alkaloids/isolation & purification , Antineoplastic Agents, Phytogenic/chemistry , Antineoplastic Agents, Phytogenic/isolation & purification , Antioxidants/chemistry , Antioxidants/isolation & purification , Biphenyl Compounds/antagonists & inhibitors , Biphenyl Compounds/chemistry , Cell Death/drug effects , Flavonoids/chemistry , Flavonoids/isolation & purification , Hep G2 Cells , Humans , Picrates/antagonists & inhibitors , Picrates/chemistry , Plant Extracts/chemistry , Plant Leaves/chemistry , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-2/metabolism , Seeds/chemistry , Signal Transduction , Tannins/chemistry , Tannins/isolation & purification , Terpenes/chemistry , Terpenes/isolation & purification , alpha-Amylases/genetics , alpha-Amylases/metabolism , bcl-2-Associated X Protein/genetics , bcl-2-Associated X Protein/metabolism
9.
Environ Monit Assess ; 193(12): 824, 2021 Nov 18.
Article in English | MEDLINE | ID: mdl-34792658

ABSTRACT

Globally, the production of zinc oxide nanoparticles (ZnO NPs) increased due to its wide applications including cosmetics, paints etc., and gets accumulated in the environment during their production, use or end-of-life. The toxic effects of the NPs vary with the presence of various surface modification agents. In the current report, toxic effect of bare and capped ZnO NPs with polymeric surface modifying agent including polyvinyl alcohol (PVA), polyethylene glycol (PEG) and polyvinylpyrrolidone (PVP) is studied against adult as well as embryonic zebra fish. The surface capped NPs showed great variation in toxicity levels. It was observed that ZnO-PVA showed highly reduced toxic effects relative to ZnO-PEG and ZnO-PVP. Further, various environmental agents including humic acid can also have an impact on NPs toxicity. ZnO particles showed increased toxic effect in humic acid presence. The uptake of ZnO particles by D. rerio was high in the order of PVP-, PEG- and PVA- followed by bare-ZnO. The current investigation found that ZnO NPs dissolution and uptake are the major factors which cause the toxicity against adult as well as embryonic zebra fishes respectively.


Subject(s)
Metal Nanoparticles , Nanoparticles , Zinc Oxide , Animals , Environmental Monitoring , Metal Nanoparticles/toxicity , Nanoparticles/toxicity , Polyethylene Glycols/toxicity , Polyvinyl Alcohol/toxicity , Povidone/toxicity , Zebrafish , Zinc Oxide/toxicity
10.
Molecules ; 25(18)2020 Sep 16.
Article in English | MEDLINE | ID: mdl-32947799

ABSTRACT

Combination therapy using chemically distinct drugs has appeared as one of the promising strategies to improve anticancer treatment efficiency. In the present investigation, poly-(lactic-co-glycolic) acid (PLGA) nanoparticles electrostatically conjugated with polyethylenimine (PEI)-based co-delivery system for epirubicin and paclitaxel (PLGA-PEI-EPI-PTX NPs) has been developed. The PLGA-PEI-EPI-PTX NPs exhibited a monodispersed size distribution with an average size of 240.93 ± 12.70 nm as measured through DLS and 70.8-145 nm using AFM. The zeta potential of 41.95 ± 0.65 mV from -17.45 ± 2.15 mV further confirmed the colloidal stability and PEI modification on PLGA nanoparticles. Encapsulation and loading efficiency along with in vitro release of drug for nanoparticles were done spectrophotometrically. The FTIR analysis of PLGA-PEI-EPI-PTX NPs revealed the involvement of amide moiety between polymer PLGA and PEI. The effect of nanoparticles on the cell migration was also corroborated through wound healing assay. The MTT assay demonstrated that PLGA-PEI-EPI-PTX NPs exhibited considerable anticancer potential as compared to the naïve drugs. Further, p53 protein expression analysed through western blot showed enhanced expression. This study suggests that combination therapy using PLGA-PEI-EPI-PTX NPs represent a potential approach and could offer clinical benefits in the future for lung cancer patients.


Subject(s)
Antineoplastic Agents/chemistry , Drug Carriers/chemistry , Epirubicin/chemistry , Nanoparticles/chemistry , Paclitaxel/chemistry , Polylactic Acid-Polyglycolic Acid Copolymer/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacology , Cell Line, Tumor , Cell Movement/drug effects , Cell Survival/drug effects , Drug Liberation , Epirubicin/metabolism , Epirubicin/pharmacology , Humans , Hydrogen-Ion Concentration , Kinetics , Lung Neoplasms/metabolism , Lung Neoplasms/pathology , Paclitaxel/metabolism , Paclitaxel/pharmacology
11.
Molecules ; 25(6)2020 Mar 19.
Article in English | MEDLINE | ID: mdl-32204366

ABSTRACT

Nitroaromatic and nitroamine compounds such as 2,4,6-trinitrotoluene (TNT) are teratogenic, cytotoxic, and may cause cellular mutations in humans, animals, plants, and microorganisms. Microbial-based bioremediation technologies have been shown to offer several advantages against the cellular toxicity of nitro-organic compounds. Thus, the current study was designed to evaluate the ability of Trichoderma viride to degrade nitrogenous explosives, such as TNT, by microbiological assay and Gas chromatography-mass spectrometry (GC-MS) analysis. In this study, T. viride fungus was shown to have the ability to decompose, and TNT explosives were used at doses of 50 and 100 ppm on the respective growth media as a nitrogenous source needed for normal growth. The GC/MS analysis confirmed the biodegradable efficiency of TNT, whereas the initial retention peak of the TNT compounds disappeared, and another two peaks appeared at the retention times of 9.31 and 13.14 min. Mass spectrum analysis identified 5-(hydroxymethyl)-2-furancarboxaldehyde with the molecular formula C6H6O3 and a molecular weight of 126 g·mol-1 as the major compound, and 4-propyl benzaldehyde with a formula of C10H12O and a molecular weight of 148 g mol-1 as the minor compound, both resulting from the biodegradation of TNT by T. viride. In conclusion, T. viride could be used in microbial-based bioremediation technologies as a biological agent to eradicate the toxicity of the TNT explosive. In addition, future molecular-based studies should be conducted to clearly identify the enzymes and the corresponding genes that give T. viride the ability to degrade and remediate TNT explosives. This could help in the eradication of soils contaminated with explosives or other toxic biohazards.


Subject(s)
Explosive Agents/chemistry , Trichoderma/growth & development , Trinitrotoluene/chemistry , Biodegradation, Environmental , Culture Media/analysis , Culture Media/chemistry , Gas Chromatography-Mass Spectrometry , Nitrogen/chemistry , Soil Pollutants/chemistry , Trichoderma/metabolism
12.
Molecules ; 25(21)2020 Oct 30.
Article in English | MEDLINE | ID: mdl-33143044

ABSTRACT

The increasing interest in developing potent non-toxic drugs in medicine is widening the opportunities for studying the usage of nanostructures in the treatment of various diseases. The present work reports a method for a facile and an eco-friendly synthesis of silver nanoparticles (AgNPs) using Terminalia chebula fruit extract (TCE). The obtained AgNPs was characterized by using different spectroscopic and microscopic techniques. The analysis of the results revealed that the as-obtained AgNPs have spherical morphology with an average diameter of 22 nm. Furthermore, the preliminary bioactivity evaluations revealed that the bio-conjugation of AgNPs, using TCE, significantly enhanced the antibacterial and anti-breast cancer potentials of the latter. The antibacterial activity of the as-prepared AgNPs showed that B. subtilis was more sensitive towards the AgNPs, followed by P. aeruginosa; while, E. coli and S. mutans showed comparatively minimal sensitivity toward the AgNPs. The IC50 values of TCE, AgNPs and TCE + AgNPs treatment of MCF-7 were found to be 17.53, 14.25 and 6.484 µg/mL, respectively. Therefore, it can be ascertained that the bio-conjugation may provide a headway with regard to the therapeutic employment of T. chebula, upon mechanistically understanding the basis of observed antibacterial and anticancer activities.


Subject(s)
Anti-Infective Agents , Bacillus subtilis/growth & development , Breast Neoplasms/drug therapy , Cytotoxins , Fruit/chemistry , Metal Nanoparticles , Plant Extracts/chemistry , Silver , Terminalia/chemistry , Anti-Infective Agents/chemical synthesis , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Breast Neoplasms/metabolism , Breast Neoplasms/pathology , Cell Line, Tumor , Cytotoxins/chemical synthesis , Cytotoxins/chemistry , Cytotoxins/pharmacology , Female , Humans , Metal Nanoparticles/chemistry , Metal Nanoparticles/therapeutic use , Silver/chemistry , Silver/pharmacology
13.
Microb Pathog ; 119: 42-48, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29635050

ABSTRACT

In this study, monodispersed, highly biocompatible and substantially stable glucose encapsulated CdO nanoparticles (G-CdO NPs) of uniform sizes were synthesized using a sol-gel route. In addition, naked CdO (n-CdO) NPs without any capping or surface functionalization were synthesized using the same method. These NPs were uniformly dispersed in an aqueous solution. The synthesis of G-CdO and n-CdO NP was confirmed by UV-Vis spectroscopy, transmission electron microscopy (TEM), zeta potential, and dynamic light scattering analyses. The average size of G-CdO and n-CdO NP was found to be 17±1and 27 ±â€¯1 nm, under TEM, respectively. X-ray diffraction analysis of G-CdO and n-CdO NPs confirmed their sizes to be 18.83 and 28.41 nm, respectively, and revealed their cubic crystal structures with no impurity. The surface functionalization of G-CdO NPs with glucose was confirmed by Nuclear Magnetic Resonance and Fourier-transform infrared spectroscopy analyses. As per our knowledge, this is the first report to investigate the potencies of G-CdO and n-CdO NPs against gram-negative and gram-positive multi-drug resistant (MDR) bacteria. The minimum inhibitory concentrations of G-CdO and n-CdO NPs were6.42 and 16.29 µg/ml, respectively, against Escherichia coli (NCIM 2571-MDR), whereas 7.5 µg/ml & 11.6 µg/ml, respectively against S. aureus (NCIM- 2079) as determined by the double dilution method. The minimum bactericidal concentration was determined at the concentration for which no growth was observed. TEM analysis of E. coli cells treated with G-CdO NPs revealed cell shrinkage and degraded cell membranes, while the cell surfaces of untreated viable cells were smooth.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Cadmium Compounds/pharmacology , Drug Resistance, Multiple, Bacterial/drug effects , Escherichia coli/drug effects , Glucose/metabolism , Metal Nanoparticles/chemistry , Oxides/pharmacology , Silver/chemistry , Biocompatible Materials/pharmacology , Cadmium Compounds/chemistry , Cell Membrane/drug effects , Escherichia coli/growth & development , Magnetic Resonance Spectroscopy , Metal Nanoparticles/ultrastructure , Microbial Sensitivity Tests , Microbial Viability/drug effects , Microscopy, Electron, Transmission , Oxides/chemistry , Particle Size , Spectroscopy, Fourier Transform Infrared , Staphylococcus aureus/drug effects , X-Ray Diffraction
14.
PLoS Genet ; 8(11): e1003088, 2012.
Article in English | MEDLINE | ID: mdl-23209441

ABSTRACT

We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens Cladosporium fulvum (Cfu) (syn. Passalora fulva) and Dothistroma septosporum (Dse) that are closely related phylogenetically, but have different lifestyles and hosts. Although both fungi grow extracellularly in close contact with host mesophyll cells, Cfu is a biotroph infecting tomato, while Dse is a hemibiotroph infecting pine. The genomes of these fungi have a similar set of genes (70% of gene content in both genomes are homologs), but differ significantly in size (Cfu >61.1-Mb; Dse 31.2-Mb), which is mainly due to the difference in repeat content (47.2% in Cfu versus 3.2% in Dse). Recent adaptation to different lifestyles and hosts is suggested by diverged sets of genes. Cfu contains an α-tomatinase gene that we predict might be required for detoxification of tomatine, while this gene is absent in Dse. Many genes encoding secreted proteins are unique to each species and the repeat-rich areas in Cfu are enriched for these species-specific genes. In contrast, conserved genes suggest common host ancestry. Homologs of Cfu effector genes, including Ecp2 and Avr4, are present in Dse and induce a Cf-Ecp2- and Cf-4-mediated hypersensitive response, respectively. Strikingly, genes involved in production of the toxin dothistromin, a likely virulence factor for Dse, are conserved in Cfu, but their expression differs markedly with essentially no expression by Cfu in planta. Likewise, Cfu has a carbohydrate-degrading enzyme catalog that is more similar to that of necrotrophs or hemibiotrophs and a larger pectinolytic gene arsenal than Dse, but many of these genes are not expressed in planta or are pseudogenized. Overall, comparison of their genomes suggests that these closely related plant pathogens had a common ancestral host but since adapted to different hosts and lifestyles by a combination of differentiated gene content, pseudogenization, and gene regulation.


Subject(s)
Adaptation, Physiological/genetics , Cladosporium/genetics , Genome , Host-Pathogen Interactions , Base Sequence , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Solanum lycopersicum/genetics , Solanum lycopersicum/parasitology , Phylogeny , Pinus/genetics , Pinus/parasitology , Plant Diseases/genetics
15.
Fungal Divers ; 69(1): 1-55, 2014 Nov.
Article in English | MEDLINE | ID: mdl-27284275

ABSTRACT

Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and nonpleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data.

16.
Environ Pollut ; 351: 124065, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38697253

ABSTRACT

The effect of peach shell biochar (PSB) amendment on sheep manure (SM) composting was investigated. Five different ratios of PSB were applied (0%, 2.5%, 5%, 7.5%, and 10% PSB), and named T1 to T5, and run 50 days of composting experiment. It was found that PSB (especially 7.5% and 10%) could improve the compost environment, regulate the activity of microorganisms and related enzymes, and promote the decomposition of compost. 7.5% and 10% PSB advanced the heap into the thermophilic stage and increased the maximum temperature, while also increasing the germination index by 1.40 and 1.39 times compared to control. Importantly, 10% PSB effectively retained more than 60% of carbon and 55% of nitrogen by inhibiting the excess release of NH3 and greenhouse gases. High proportion PSB amendment increased the activity of dehydrogenase and cellulase, but inhibited protease and urease. The correlation results indicated that PSB changed the key bacterial genus, and there was a stronger association with environmental factors at 7.5% and 10%. Therefore, 7.5% and 10% peach shell biochar can be used as appropriate proportions to improve composting conditions.


Subject(s)
Charcoal , Composting , Manure , Prunus persica , Animals , Charcoal/chemistry , Sheep , Prunus persica/chemistry , Nitrogen , Soil/chemistry , Carbon , Ammonia/metabolism
17.
Environ Pollut ; 356: 124372, 2024 Jun 14.
Article in English | MEDLINE | ID: mdl-38880326

ABSTRACT

This study pursued to regulate bacterial community succession pattern and expedited biodegradation of microplastics (MP) during pig manure (PM) composting employing walnut shell biochar (WSB) and montmorillonite (M). The WSB with concentration of 0%, 2.5%, 5%, 7.5%, 10% and 12% along with 10% M participated into PM for 42 days compost to search the optimal solution. The results confirmed the most prosperous bacterial phylum consisted of Firmicutes (3.02%-91.80%), Proteobacteria (2.08%-48.54%), Chloroflexi (0-44.62%) and Bacteroidetes (0.85%-40.93%). The addition of biochar has dramatically arranged bacterial community at different stages of composting. Energy Dispersive Spectrometer (EDS) revealed that carbon element in MPs decreased since the chemical bond fracture, under the intervention of high-temperature composting and WSB, the carbon content of MPs was maximum reduced by 20.25%. Fourier transform infrared spectrum indicated that CC, C-O, C-H and -COOH abundance of MPs in 10% and 12% dose biochar addition sharply reduced, interestingly, explicating WSB and composting made MP biodegradable. This experiment possesses affirmatory practical meaning for elimination of potential hazards by composting.

18.
Curr Pharm Des ; 30(4): 295-309, 2024.
Article in English | MEDLINE | ID: mdl-38213175

ABSTRACT

BACKGROUND: Urolithiasis is a prevalent condition with significant morbidity and economic implications. The economic burden associated with urolithiasis primarily stems from medical expenses. Previous literature suggests that herbal plants, including Cucurbita pepo, have lithotriptic capabilities. C. pepo is an annual, herbaceous, widely grown, and monoecious vegetative plant known for its antioxidants, fibers, and fatty acids. Recent studies on C. pepo seeds have shown therapeutic potential in reducing bladder stones and urodynamic illnesses, like kidney stones. However, the precise molecular and pharmacological mechanisms are unclear. OBJECTIVE: In this research, we employed network pharmacology and molecular docking to examine the active compounds and biological mechanisms of Cucurbita pepo against kidney stones. METHODS: Active constituents were obtained from previous studies and the IMPPAT database, with their targets predicted using Swiss target prediction. Kidney stone-associated genes were collected from DisGeNET and GeneCards. The active constituent-target-pathway network was constructed using Cytoscape, and the target protein-protein interaction network was generated using the STRING database. Gene enrichment analysis of C. pepo core targets was conducted using DAVID. Molecular docking was performed to identify potential kidney stone-fighting agents. RESULTS: The findings revealed that Cucurbita pepo contains 18 active components and has 192 potential gene targets, including AR, EGFR, ESR1, AKT1, MAPK3, SRC, and MTOR. Network analysis demonstrated that C. pepo seeds may prevent kidney stones by influencing disease-related signaling pathways. Molecular docking indicated that key kidney stone targets (mTOR, EGFR, AR, and ESR1) effectively bind with active constituents of C. pepo. CONCLUSION: These findings provide insight into the anti-kidney stone effects of Cucurbita pepo at a molecular level. In conclusion, this study contributes to understanding the potential of Cucurbita pepo in combating kidney stones and lays the foundation for further research.


Subject(s)
Cucurbita , Kidney Calculi , Molecular Docking Simulation , Network Pharmacology , Seeds , Cucurbita/chemistry , Kidney Calculi/drug therapy , Seeds/chemistry , Humans
19.
Spectrochim Acta A Mol Biomol Spectrosc ; 314: 124191, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38565046

ABSTRACT

The facilegreen synthesis techniqueis becoming more and more important, and it has been proposed as a potential substitute for chemical techniques. The current study describes a low-cost, environmentally friendly method for producing tungsten trioxide (WO3) and tantalum (Ta) doped WO3nanoparticles that uses 15 % (w/v) Azadirachta indica (Neem) leaf extract and different concentrations of Ta dopant (1 to 5 %) due to its well-matched ionic radius with WO3. Various techniques FESEM, TEM, EDX, BET, UV-Vis and PL, XRD, and FTIR were used to illustrate the morphological, elemental, optical, structural, and vibrational analysis of the synthesized nanoparticles respectively. Interestingly, the band gap was significantly reduced to 1.88 eV by the addition of a dopant element. For 3 % Ta/WO3, the average particle size was also reduced to 31.6 nm. The synthesized WO3nanoparticles employed in the current study have been used for photocatalytic activitypurposes. Methylene blue (MB), one of the principal water pollutants, was degraded more quickly by the synthesized Ta/WO3nanoparticles when exposed to UV radiation. Among them, 3 % Ta/WO3 gives significantly higher photodegradation 89 % attributed to the Burstein-Moss effect. The significant output of optimized nano-photocatalyst has been observed from the trapping experiment and reusability test. Furthermore, Zeta potential and TOC analysis have been taken to check the stability and mineralization performance. Additionally, the results of the simulation that was carried out using the finite element analysis approach in the RF module of COMSOL Multiphysics 5.3a are quite similar to the experimental findings. This simulation method made it easier for readers to understand the numerous aspects of the photocatalytic process that has been discussed here.

20.
J Hazard Mater ; 465: 133161, 2024 Mar 05.
Article in English | MEDLINE | ID: mdl-38103291

ABSTRACT

The increasing global demand for tellurium, driven by its critical role in alloys, photovoltaic devices, and electronics, has raised concerns about its environmental pollution and neurotoxicity. In response, the potential of alginic acid (AA), a renewable, low-cost, and sustainable biopolymer, was explored for the biosynthesis of ultra-small silver nanoparticles (AgNPs) and their application in the detection of tellurium (Te(IV)). The effect of key synthesis parameters on desired physicochemical properties and yield of AgNPs was established to ensure high specificity and sensitivity towards Te(IV). The purified AgNPs with AA surface ligands were utilized to demonstrate a ratiometric absorbance sensor that exhibits excellent linearity and nanomolar-level affinity. This approach achieved a high correlation coefficient of ∼ 0.982, with a low detection limit of about 22 nM. Further investigations into the effect of pH, ionic strength, and organic molecules were conducted to elucidate detection performance and molecular understanding. The detection mechanism relies on the coordination between Te(IV) ions and the carboxylate groups of AA, which initiates aggregation-induced plasmon coupling in adjacent AgNPs. The capability of this analytical method to monitor Te(IV) in real-world water samples features its rapidity, user-friendliness, and suitability for point-of-care monitoring, making it a promising alternative to more complex techniques.

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