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1.
Nat Immunol ; 14(11): 1137-45, 2013 Nov.
Article in English | MEDLINE | ID: mdl-24076636

ABSTRACT

The T cell repertoire comprises αß and γδ T cell lineages. Although it is established how αß T cell antigen receptors (TCRs) interact with antigen presented by antigen-presenting molecules, this is unknown for γδ TCRs. We describe a population of human Vδ1(+) γδ T cells that exhibit autoreactivity to CD1d and provide a molecular basis for how a γδ TCR binds CD1d-α-galactosylceramide (α-GalCer). The γδ TCR docked orthogonally, over the A' pocket of CD1d, in which the Vδ1-chain, and in particular the germ line-encoded CDR1δ loop, dominated interactions with CD1d. The TCR γ-chain sat peripherally to the interface, with the CDR3γ loop representing the principal determinant for α-GalCer specificity. Accordingly, we provide insight into how a γδ TCR binds specifically to a lipid-loaded antigen-presenting molecule.


Subject(s)
Antigens, CD1d/chemistry , Galactosylceramides/chemistry , Molecular Docking Simulation , Receptors, Antigen, T-Cell, gamma-delta/chemistry , T-Lymphocyte Subsets/immunology , Amino Acid Sequence , Antigens, CD1d/immunology , Binding Sites , Databases, Protein , Galactosylceramides/immunology , Humans , Molecular Sequence Data , Protein Binding , Protein Structure, Tertiary , Receptors, Antigen, T-Cell, gamma-delta/immunology , T-Lymphocyte Subsets/cytology
2.
Nat Immunol ; 14(9): 908-16, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23872678

ABSTRACT

Human T cells that express a T cell antigen receptor (TCR) containing γ-chain variable region 9 and δ-chain variable region 2 (Vγ9Vδ2) recognize phosphorylated prenyl metabolites as antigens in the presence of antigen-presenting cells but independently of major histocompatibility complex (MHC), the MHC class I-related molecule MR1 and antigen-presenting CD1 molecules. Here we used genetic approaches to identify the molecule that binds and presents phosphorylated antigens. We found that the butyrophilin BTN3A1 bound phosphorylated antigens with low affinity, at a stoichiometry of 1:1, and stimulated mouse T cells with transgenic expression of a human Vγ9Vδ2 TCR. The structures of the BTN3A1 distal domain in complex with host- or microbe-derived phosphorylated antigens had an immunoglobulin-like fold in which the antigens bound in a shallow pocket. Soluble Vγ9Vδ2 TCR interacted specifically with BTN3A1-antigen complexes. Accordingly, BTN3A1 represents an antigen-presenting molecule required for the activation of Vγ9Vδ2 T cells.


Subject(s)
Antigens, CD/metabolism , Antigens/immunology , Antigens/metabolism , Receptors, Antigen, T-Cell, gamma-delta/metabolism , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism , Animals , Antigen Presentation/genetics , Antigen Presentation/immunology , Antigen-Presenting Cells/immunology , Antigen-Presenting Cells/metabolism , Antigens, CD/chemistry , Antigens, CD/genetics , Butyrophilins , Chromosomes, Human, Pair 6 , Humans , Mice , Mice, Transgenic , Models, Molecular , Organophosphates/chemistry , Organophosphates/metabolism , Phosphorylation , Protein Binding , Protein Conformation , Receptors, Antigen, T-Cell, gamma-delta/immunology
3.
Nat Immunol ; 14(9): 901-7, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23872679

ABSTRACT

Type I interferons are important in regulating immune responses to pathogens and tumors. All interferons are considered to signal via the heterodimeric IFNAR1-IFNAR2 complex, yet some subtypes such as interferon-ß (IFN-ß) can exhibit distinct functional properties, although the molecular basis of this is unclear. Here we demonstrate IFN-ß can uniquely and specifically ligate to IFNAR1 in an IFNAR2-independent manner, and we provide the structural basis of the IFNAR1-IFN-ß interaction. The IFNAR1-IFN-ß complex transduced signals that modulated expression of a distinct set of genes independently of Jak-STAT pathways. Lipopolysaccharide-induced sepsis was ameliorated in Ifnar1(-/-) mice but not Ifnar2(-/-) mice, suggesting that IFNAR1-IFN-ß signaling is pathologically relevant. Thus, we provide a molecular basis for understanding specific functions of IFN-ß.


Subject(s)
Interferon-beta/chemistry , Interferon-beta/metabolism , Receptor, Interferon alpha-beta/chemistry , Receptor, Interferon alpha-beta/metabolism , Signal Transduction , Animals , Disease Models, Animal , Female , Lipopolysaccharides/adverse effects , Mice , Mice, Knockout , Models, Molecular , Multiprotein Complexes/chemistry , Multiprotein Complexes/metabolism , Protein Binding , Protein Conformation , Protein Stability , Receptor, Interferon alpha-beta/genetics , Shock, Septic/chemically induced , Shock, Septic/genetics , Shock, Septic/metabolism , Shock, Septic/mortality
4.
Nat Immunol ; 14(7): 699-705, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23666294

ABSTRACT

Activating and inhibitory receptors on natural killer (NK) cells have a crucial role in innate immunity, although the basis of the engagement of activating NK cell receptors is unclear. The activating receptor Ly49H confers resistance to infection with murine cytomegalovirus by binding to the 'immunoevasin' m157. We found that m157 bound to the helical stalk of Ly49H, whereby two m157 monomers engaged the Ly49H dimer. The helical stalks of Ly49H lay centrally across the m157 platform, whereas its lectin domain was not required for recognition. Instead, m157 targeted an 'aromatic peg motif' present in stalks of both activating and inhibitory receptors of the Ly49 family, and substitution of this motif abrogated binding. Furthermore, ligation of m157 to Ly49H or Ly49C resulted in intracellular signaling. Accordingly, m157 has evolved to 'tackle the legs' of a family of NK cell receptors.


Subject(s)
Herpesviridae Infections/immunology , Histocompatibility Antigens Class I/immunology , Immunity, Innate/immunology , Killer Cells, Natural/immunology , Muromegalovirus/immunology , NK Cell Lectin-Like Receptor Subfamily A/immunology , Amino Acid Motifs/immunology , Amino Acid Sequence , Animals , Crystallography, X-Ray , Female , Mice , Mice, Inbred BALB C , Models, Molecular , Molecular Sequence Data , Signal Transduction/immunology , Specific Pathogen-Free Organisms , Surface Plasmon Resonance
5.
J Biol Chem ; 298(5): 101892, 2022 05.
Article in English | MEDLINE | ID: mdl-35378130

ABSTRACT

Bordetella pertussis is the causative agent of whooping cough, a highly contagious respiratory disease. Pertussis toxin (PT), a major virulence factor secreted by B. pertussis, is an AB5-type protein complex topologically related to cholera toxin. The PT protein complex is internalized by host cells and follows a retrograde trafficking route to the endoplasmic reticulum, where it subsequently dissociates. The released enzymatic S1 subunit is then translocated from the endoplasmic reticulum into the cytosol and subsequently ADP-ribosylates the inhibitory alpha-subunits (Gαi) of heterotrimeric G proteins, thus promoting dysregulation of G protein-coupled receptor signaling. However, the mechanistic details of the ADP-ribosylation activity of PT are not well understood. Here, we describe crystal structures of the S1 subunit in complex with nicotinamide adenine dinucleotide (NAD+), with NAD+ hydrolysis products ADP-ribose and nicotinamide, with NAD+ analog PJ34, and with a novel NAD+ analog formed upon S1 subunit crystallization with 3-amino benzamide and NAD+, which we name benzamide amino adenine dinucleotide. These crystal structures provide unprecedented insights into pre- and post-NAD+ hydrolysis steps of the ADP-ribosyltransferase activity of PT. We propose that these data may aid in rational drug design approaches and further development of PT-specific small-molecule inhibitors.


Subject(s)
NAD , Pertussis Toxin/chemistry , Virulence Factors, Bordetella/chemistry , ADP-Ribosylation , Adenosine Diphosphate Ribose/metabolism , Bordetella pertussis , Cytosol/metabolism , NAD/metabolism
6.
J Biol Chem ; 298(5): 101900, 2022 05.
Article in English | MEDLINE | ID: mdl-35398357

ABSTRACT

Many pathogenic bacteria secrete AB5 toxins that can be virulence factors. Cytotoxic A subunits are delivered to the cytosol following B subunit binding to specific host cell surface glycans. Some B subunits are not associated with A subunits, for example, YpeB of Yersinia pestis, the etiologic agent of plague. Plague cannot be eradicated because of Y. pestis' adaptability to numerous hosts. We previously showed selective binding of other B5 pentamers to a sialoglycan microarray, with sialic acid (Sia) preferences corresponding to those prominently expressed by various hosts, for example, N-acetylneuraminic acid (Neu5Ac; prominent in humans) or N-glycolylneuraminic acid (Neu5Gc; prominent in ruminant mammals and rodents). Here, we report that A subunit phylogeny evolved independently of B subunits and suggest a future B subunit nomenclature based on bacterial species names. We also found via phylogenetic analysis of B subunits, which bind Sias, that homologous molecules show poor correlation with species phylogeny. These data indicate ongoing lateral gene transfers between species, including mixing of A and B subunits. Consistent with much broader host range of Y. pestis, we show that YpeB recognizes all mammalian Sia types, except for 4-O-acetylated ones. Notably, YpeB alone causes dose-dependent cytotoxicity, which is abolished by a mutation (Y77F) eliminating Sia recognition, suggesting that cell proliferation and death are promoted via lectin-like crosslinking of cell surface sialoglycoconjugates. These findings help explain the host range of Y. pestis and could be important for pathogenesis. Overall, our data indicate ongoing rapid evolution of both host Sias and pathogen toxin-binding properties.


Subject(s)
Bacteria , Bacterial Toxins , Host Specificity , Polysaccharides , Animals , Bacteria/classification , Bacteria/metabolism , Bacterial Toxins/metabolism , Bacterial Toxins/toxicity , Evolution, Molecular , Mammals/metabolism , N-Acetylneuraminic Acid/metabolism , Phylogeny , Plague/microbiology , Polysaccharides/metabolism , Protein Binding , Protein Subunits/metabolism , Yersinia pestis/metabolism
7.
Nat Immunol ; 12(9): 827-33, 2011 Jul 31.
Article in English | MEDLINE | ID: mdl-21804559

ABSTRACT

The most potent foreign antigens for natural killer T cells (NKT cells) are α-linked glycolipids, whereas NKT cell self-reactivity involves weaker recognition of structurally distinct ß-linked glycolipid antigens. Here we provide the mechanism for the autoreactivity of T cell antigen receptors (TCRs) on NKT cells to the mono- and tri-glycosylated ß-linked agonists ß-galactosylceramide (ß-GalCer) and isoglobotrihexosylceramide (iGb3), respectively. In binding these disparate antigens, the NKT cell TCRs docked onto CD1d similarly, achieving this by flattening the conformation of the ß-linked ligands regardless of the size of the glycosyl head group. Unexpectedly, the antigenicity of iGb3 was attributable to its terminal sugar group making compensatory interactions with CD1d. Thus, the NKT cell TCR molds the ß-linked self ligands to resemble the conformation of foreign α-linked ligands, which shows that induced-fit molecular mimicry can underpin the self-reactivity of NKT cell TCRs to ß-linked antigens.


Subject(s)
Antigens, CD1d/immunology , Autoimmunity , Galactosylceramides/immunology , Globosides/immunology , Natural Killer T-Cells/immunology , Receptors, Antigen, T-Cell, alpha-beta , Trihexosylceramides/immunology , Amino Acid Sequence , Animals , Antigens, CD1d/chemistry , Antigens, CD1d/metabolism , Binding Sites , Crystallography, X-Ray , Flow Cytometry , Galactosylceramides/chemistry , Galactosylceramides/metabolism , Globosides/chemistry , Globosides/metabolism , Humans , Hybridomas , Kinetics , Mice , Models, Molecular , Molecular Mimicry , Molecular Sequence Data , Natural Killer T-Cells/cytology , Natural Killer T-Cells/metabolism , Protein Binding/immunology , Protein Engineering/methods , Receptors, Antigen, T-Cell, alpha-beta/chemistry , Receptors, Antigen, T-Cell, alpha-beta/immunology , Receptors, Antigen, T-Cell, alpha-beta/metabolism , Structure-Activity Relationship , Surface Plasmon Resonance , Trihexosylceramides/chemistry , Trihexosylceramides/metabolism
8.
Glycobiology ; 32(12): 1101-1115, 2022 11 22.
Article in English | MEDLINE | ID: mdl-36048714

ABSTRACT

Vertebrate sialic acids (Sias) display much diversity in modifications, linkages, and underlying glycans. Slide microarrays allow high-throughput explorations of sialoglycan-protein interactions. A microarray presenting ~150 structurally defined sialyltrisaccharides with various Sias linkages and modifications still poses challenges in planning, data sorting, visualization, and analysis. To address these issues, we devised a simple 9-digit code for sialyltrisaccharides with terminal Sias and underlying two monosaccharides assigned from the nonreducing end, with 3 digits assigning a monosaccharide, its modifications, and linkage. Calculations based on the encoding system reveal >113,000 likely linear sialyltrisaccharides in nature. Notably, a biantennary N-glycan with 2 terminal sialyltrisaccharides could thus have >1010 potential combinations and a triantennary N-glycan with 3 terminal sequences, >1015 potential combinations. While all possibilities likely do not exist in nature, sialoglycans encode enormous diversity. While glycomic approaches are used to probe such diverse sialomes, naturally occurring bacterial AB5 toxin B subunits are simpler tools to track the dynamic sialome in biological systems. Sialoglycan microarray was utilized to compare sialoglycan-recognizing bacterial toxin B subunits. Unlike the poor correlation between B subunits and species phylogeny, there is stronger correlation with Sia-epitope preferences. Further supporting this pattern, we report a B subunit (YenB) from Yersinia enterocolitica (broad host range) recognizing almost all sialoglycans in the microarray, including 4-O-acetylated-Sias not recognized by a Yersinia pestis orthologue (YpeB). Differential Sia-binding patterns were also observed with phylogenetically related B subunits from Escherichia coli (SubB), Salmonella Typhi (PltB), Salmonella Typhimurium (ArtB), extra-intestinal E.coli (EcPltB), Vibrio cholera (CtxB), and cholera family homologue of E. coli (EcxB).


Subject(s)
Bacterial Toxins , Escherichia coli , Salmonella typhi/chemistry , Sialic Acids , Bacterial Toxins/chemistry , Polysaccharides , Cholera Toxin
9.
Parasitol Res ; 121(6): 1597-1606, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35435513

ABSTRACT

The sheep body louse (Bovicola ovis) commonly referred to as sheep lice are small chewing ectoparasites of sheep. Infection results in significant economic costs to the Australian sheep industry due to reduced wool quality caused by chronic itching from sheep rubbing and biting fleece. Treatment relies on use of insecticides; however, resistance has developed against pyrethroid and other insect growth regulator lousicides. There is urgent need to develop cost-effective lice management to reduce the use of insecticides, with the application of insecticidal treatments only applied when an infestation is detected. However, the current detection method relies on fleece parting for detection of B. ovis which is highly dependent on the skill of the inspector, the number of sheep examined, and the prevalence and severity of the infestation. To improve B. ovis detection, a highly sensitive (5 × 10-8 ng/µL) and specific multiplex quantitative PCR which simultaneously detects sheep lice and sheep DNA was developed. In addition, a B. ovis loop-mediated isothermal amplification (LAMP) assay was developed for field use. The B. ovis LAMP (Bov-LAMP) assay was optimized to reliably detect B. ovis from wool samples down to 5 × 10-6 ng/µL, with time to positive (Tp) < 10 min. Both assays demonstrate high sensitivity and specificity, enabling rapid identification of B. ovis DNA from sheep fleece samples and have the capacity to be used for ongoing management and surveillance of B. ovis in Australian sheep flocks.


Subject(s)
Insecticides , Ischnocera , Lice Infestations , Phthiraptera , Sheep Diseases , Animals , Australia , Lice Infestations/diagnosis , Lice Infestations/epidemiology , Lice Infestations/veterinary , Sheep , Sheep Diseases/parasitology , Wool/parasitology
10.
Immunity ; 37(4): 611-21, 2012 Oct 19.
Article in English | MEDLINE | ID: mdl-23063329

ABSTRACT

Celiac disease is a human leukocyte antigen (HLA)-DQ2- and/or DQ8-associated T cell-mediated disorder that is induced by dietary gluten. Although it is established how gluten peptides bind HLA-DQ8 and HLA-DQ2, it is unclear how such peptide-HLA complexes are engaged by the T cell receptor (TCR), a recognition event that triggers disease pathology. We show that biased TCR usage (TRBV9(∗)01) underpins the recognition of HLA-DQ8-α-I-gliadin. The structure of a prototypical TRBV9(∗)01-TCR-HLA-DQ8-α-I-gliadin complex shows that the TCR docks centrally above HLA-DQ8-α-I-gliadin, in which all complementarity-determining region-ß (CDRß) loops interact with the gliadin peptide. Mutagenesis at the TRBV9(∗)01-TCR-HLA-DQ8-α-I-gliadin interface provides an energetic basis for the Vß bias. Moreover, CDR3 diversity accounts for TRBV9(∗)01(+) TCRs exhibiting differing reactivities toward the gliadin epitopes at various deamidation states. Accordingly, biased TCR usage is an important factor in the pathogenesis of DQ8-mediated celiac disease.


Subject(s)
Celiac Disease/immunology , Gliadin/immunology , HLA-DQ Antigens/immunology , Receptors, Antigen, T-Cell/immunology , Amino Acid Sequence , Epitopes, T-Lymphocyte/immunology , HLA-DQ Antigens/chemistry , Humans , Models, Molecular , Molecular Sequence Data , Peptide Fragments/immunology , Protein Interaction Domains and Motifs , Receptors, Antigen, T-Cell/chemistry
11.
J Biol Chem ; 292(36): 15143-15158, 2017 09 08.
Article in English | MEDLINE | ID: mdl-28663369

ABSTRACT

Pertussis-like toxins are secreted by several bacterial pathogens during infection. They belong to the AB5 virulence factors, which bind to glycans on host cell membranes for internalization. Host cell recognition and internalization are mediated by toxin B subunits sharing a unique pentameric ring-like assembly. Although the role of pertussis toxin in whooping cough is well-established, pertussis-like toxins produced by other bacteria are less studied, and their mechanisms of action are unclear. Here, we report that some extra-intestinal Escherichia coli pathogens (i.e. those that reside in the gut but can spread to other bodily locations) encode a pertussis-like toxin that inhibits mammalian cell growth in vitro We found that this protein, EcPlt, is related to toxins produced by both nontyphoidal and typhoidal Salmonella serovars. Pertussis-like toxins are secreted as disulfide-bonded heterohexamers in which the catalytic ADP-ribosyltransferase subunit is activated when exposed to the reducing environment in mammalian cells. We found here that the reduced EcPlt exhibits large structural rearrangements associated with its activation. We noted that inhibitory residues tethered within the NAD+-binding site by an intramolecular disulfide in the oxidized state dissociate upon the reduction and enable loop restructuring to form the nucleotide-binding site. Surprisingly, although pertussis toxin targets a cysteine residue within the α subunit of inhibitory trimeric G-proteins, we observed that activated EcPlt toxin modifies a proximal lysine/asparagine residue instead. In conclusion, our results reveal the molecular mechanism underpinning activation of pertussis-like toxins, and we also identified differences in host target specificity.


Subject(s)
Bacterial Toxins/chemistry , Bacterial Toxins/pharmacology , Escherichia coli/chemistry , Heterotrimeric GTP-Binding Proteins/antagonists & inhibitors , Pertussis Toxin/chemistry , Animals , Cell Proliferation/drug effects , Chlorocebus aethiops , Dose-Response Relationship, Drug , Epithelial Cells/drug effects , HEK293 Cells , Heterotrimeric GTP-Binding Proteins/metabolism , Humans , Models, Molecular , Structure-Activity Relationship , Vero Cells
12.
J Biol Chem ; 292(51): 21149-21158, 2017 12 22.
Article in English | MEDLINE | ID: mdl-28972140

ABSTRACT

αß T cell receptors (TCRs) interact with peptides bound to the polymorphic major histocompatibility complex class Ia (MHC-Ia) and class II (MHC-II) molecules as well as the essentially monomorphic MHC class Ib (MHC-Ib) molecules. Although there is a large amount of information on how TCRs engage with MHC-Ia and MHC-II, our understanding of TCR/MHC-Ib interactions is very limited. Infection with cytomegalovirus (CMV) can elicit a CD8+ T cell response restricted by the human MHC-Ib molecule human leukocyte antigen (HLA)-E and specific for an epitope from UL40 (VMAPRTLIL), which is characterized by biased TRBV14 gene usage. Here we describe an HLA-E-restricted CD8+ T cell able to recognize an allotypic variant of the UL40 peptide with a modification at position 8 (P8) of the peptide (VMAPRTLVL) that uses the TRBV9 gene segment. We report the structures of a TRBV9+ TCR in complex with the HLA-E molecule presenting the two peptides. Our data revealed that the TRBV9+ TCR adopts a different docking mode and molecular footprint atop HLA-E when compared with the TRBV14+ TCR-HLA-E ternary complex. Additionally, despite their differing V gene segment usage and different docking mechanisms, mutational analyses showed that the TCRs shared a conserved energetic footprint on the HLA-E molecule, focused around the peptide-binding groove. Hence, we provide new insights into how monomorphic MHC molecules interact with T cells.


Subject(s)
CD8-Positive T-Lymphocytes/metabolism , Energy Metabolism , Histocompatibility Antigens Class I/metabolism , Models, Molecular , Receptors, Antigen, T-Cell, alpha-beta/agonists , Amino Acid Sequence , Binding Sites , CD8-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/immunology , Cells, Cultured , Clone Cells , Conserved Sequence , Crystallography, X-Ray , Epitope Mapping , Epitopes, T-Lymphocyte , Histocompatibility Antigens Class I/chemistry , Histocompatibility Antigens Class I/genetics , Humans , Molecular Docking Simulation , Mutagenesis, Site-Directed , Mutation , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Conformation , Protein Interaction Domains and Motifs , Receptors, Antigen, T-Cell, alpha-beta/chemistry , Receptors, Antigen, T-Cell, alpha-beta/genetics , Receptors, Antigen, T-Cell, alpha-beta/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Viral Proteins/chemistry , Viral Proteins/genetics , Viral Proteins/metabolism , HLA-E Antigens
13.
Immunity ; 30(6): 777-88, 2009 Jun 19.
Article in English | MEDLINE | ID: mdl-19464197

ABSTRACT

Ligation of the alphabeta T cell receptor (TCR) by a specific peptide-loaded major histocompatibility complex (pMHC) molecule initiates T cell signaling via the CD3 complex. However, the initial events that link antigen recognition to T cell signal transduction remain unclear. Here we show, via fluorescence-based experiments and structural analyses, that MHC-restricted antigen recognition by the alphabeta TCR results in a specific conformational change confined to the A-B loop within the alpha chain of the constant domain (Calpha). The apparent affinity constant of this A-B loop movement mirrored that of alphabeta TCR-pMHC ligation and was observed in two alphabeta TCRs with distinct pMHC specificities. The Ag-induced A-B loop conformational change could be inhibited by fixing the juxtapositioning of the constant domains and was shown to be reversible upon pMHC disassociation. Notably, the loop movement within the Calpha domain, although specific for an agonist pMHC ligand, was not observed with a pMHC antagonist. Moreover, mutagenesis of residues within the A-B loop impaired T cell signaling in an in vitro system of antigen-specific TCR stimulation. Collectively, our findings provide a basis for the earliest molecular events that underlie Ag-induced T cell triggering.


Subject(s)
Antigens/chemistry , Receptors, Antigen, T-Cell, alpha-beta/chemistry , T-Lymphocytes/immunology , Animals , Antigens/immunology , Humans , Major Histocompatibility Complex/immunology , Mutation/genetics , Peptides/chemistry , Peptides/immunology , Protein Binding/immunology , Protein Structure, Tertiary , Receptors, Antigen, T-Cell, alpha-beta/genetics , Receptors, Antigen, T-Cell, alpha-beta/immunology
14.
BMC Vet Res ; 14(1): 252, 2018 Aug 29.
Article in English | MEDLINE | ID: mdl-30157841

ABSTRACT

BACKGROUND: Ovine footrot is a highly contagious bacterial disease of sheep, costing the Australian sheep industry millions of dollars annually. Dichelobacter nodosus, the causative agent of footrot, is a gram-negative anaerobe classed into virulent and benign strains as determined by thermostability of their respective protesases. Current methods for detection of D. nodosus are difficult and time-consuming, however new molecular techniques capable of rapidly detecting and typing D. nodosus have been reported. RESULTS: A competitive real-time PCR (rtPCR) method, based on the ability to detect a 2 nucleotide difference in the aprV2 (virulent) and aprB2 (benign) extracellular protease gene has been tested on Australian samples for determining detection rates, along with clinically relevant cut-off values and performance in comparison to the traditional culturing methods. The rtPCR assay was found to have a specificity of 98.3% for virulent and 98.7% for benign detection from samples collected. Sheep with clinical signs of footrot showed a detection rate for virulent strains of 81.1% and for benign strains of 18.9%. A cut-off value of a Ct of 35 was found to be the most appropriate for use in Victoria for detection of sheep carrying virulent D. nodosus. CONCLUSIONS: In summary, the rtPCR assay is significantly more capable of detecting D. nodosus than culturing, while there is no significant difference seen in virotyping between the two methods.


Subject(s)
Dichelobacter nodosus/genetics , Foot Rot/microbiology , Real-Time Polymerase Chain Reaction/veterinary , Sheep Diseases/microbiology , Virulence/genetics , Animals , Australia , Dichelobacter nodosus/pathogenicity , Gram-Negative Bacterial Infections/microbiology , Real-Time Polymerase Chain Reaction/methods , Sheep
15.
J Biol Chem ; 291(49): 25375-25386, 2016 Dec 02.
Article in English | MEDLINE | ID: mdl-27738107

ABSTRACT

The ubiquitous second messenger cAMP mediates signal transduction processes in the malarial parasite that regulate host erythrocyte invasion and the proliferation of merozoites. In Plasmodium falciparum, the central receptor for cAMP is the single regulatory subunit (R) of protein kinase A (PKA). To aid the development of compounds that can selectively dysregulate parasite PKA signaling, we solved the structure of the PKA regulatory subunit in complex with cAMP and a related analogue that displays antimalarial activity, (Sp)-2-Cl-cAMPS. Prior to signaling, PKA-R holds the kinase's catalytic subunit (C) in an inactive state by exerting an allosteric inhibitory effect. When two cAMP molecules bind to PKA-R, they stabilize a structural conformation that facilitates its dissociation, freeing PKA-C to phosphorylate downstream substrates such as apical membrane antigen 1. Although PKA activity was known to be necessary for erythrocytic proliferation, we show that uncontrolled induction of PKA activity using membrane-permeable agonists is equally disruptive to growth.


Subject(s)
Cyclic AMP-Dependent Protein Kinases/chemistry , Cyclic AMP , Plasmodium falciparum/enzymology , Protozoan Proteins/chemistry , Allosteric Regulation , Cyclic AMP/analogs & derivatives , Cyclic AMP/chemistry , Cyclic AMP-Dependent Protein Kinases/antagonists & inhibitors , Cyclic AMP-Dependent Protein Kinases/metabolism , Protozoan Proteins/antagonists & inhibitors , Protozoan Proteins/metabolism
16.
Infect Immun ; 85(8)2017 08.
Article in English | MEDLINE | ID: mdl-28533468

ABSTRACT

Various Salmonella enterica serovars, including S. enterica serovar Typhi, encode an AB5 toxin (ArtAB), the A subunit of which is an ADP-ribosyltransferase related to the S1 subunit of pertussis toxin. However, although the A subunit is able to catalyze ADP-ribosylation of host G proteins, a cytotoxic phenotype has yet to be identified for the holotoxin. Here we show that its B subunit pentamer (ArtB) binds to receptors on the surface of Vero (African green monkey kidney) cell, CHO (Chinese hamster ovary) cell, U937 (human monocyte) cell, and HBMEC (human brain microvascular endothelial cell) lines. Moreover, ArtB induced marked vacuolation in all cell lines after 4 h of incubation. Further studies in Vero cells showed that vacuolation was inhibited by bafilomycin A1 and was dependent on the clathrin-mediated uptake of ArtB. Vacuolation was also inhibited by treatment of cells with neuraminidase, indicating that sialylated glycans are functional receptors for ArtB. Confocal colocalization studies indicated that after cell binding and internalization, ArtB undergoes retrograde transport via early endosomes, the trans-Golgi network, and the Golgi apparatus, reaching the endoplasmic reticulum (ER) after approximately 2 h. The onset of vacuolation also coincided with gross cytoskeletal reorganization. At later time points, ArtB colocalized with ER-Tracker Red in the vacuolar membrane, implying that vacuolation is a consequence of ER disorganization. Thus, the isolated B subunit of this cryptic AB5 toxin has significant effects on target cells with the potential to contribute directly to pathogenesis independently of the catalytic A subunit.


Subject(s)
Bacterial Toxins/chemistry , Bacterial Toxins/metabolism , Salmonella typhi/physiology , Vacuoles/metabolism , Animals , Biological Transport , CHO Cells , Cell Line , Chlorocebus aethiops , Cricetinae , Cricetulus , Endoplasmic Reticulum/metabolism , Endothelial Cells/metabolism , Golgi Apparatus/metabolism , Humans , Macrolides/pharmacology , Neuraminidase/pharmacology , Protein Transport , Salmonella typhi/chemistry , Salmonella typhi/pathogenicity , U937 Cells , Vacuoles/drug effects , Vero Cells
17.
J Immunol ; 194(2): 781-789, 2015 Jan 15.
Article in English | MEDLINE | ID: mdl-25480565

ABSTRACT

The killer cell Ig-like receptor 3DL1 (KIR3DL1) inhibits activation of NK cells upon interaction with HLA class I molecules such as HLA-B*57:01, which contains the Bw4 epitope spanning residues 77-83 (e.g., NLRIALR), and not with HLA allomorphs that possess the Bw6 motif (e.g., HLA-B*08:01), which differ at residues 77, 80, 81, 82, and 83. Although Bw4 residues Ile(80) and Arg(83) directly interact with KIR3DL1*001, their precise role in determining KIR3DL1-HLA-Bw4 specificity remains unclear. Recognition of HLA-B*57:01 by either KIR3DL1(+) NK cells or the NK cell line YTS transfected with KIR3DL1*001 was impaired by mutation of residues 80 and 83 of HLA-B*57:01 to the corresponding amino acids within the Bw6 motif. Conversely, the simultaneous introduction of three Bw4 residues at positions 80, 82, and 83 into HLA-B*08:01 conferred an interaction with KIR3DL1*001. Structural analysis of HLA-B*57:01, HLA-B*08:01, and mutants of each bearing substitutions at positions 80 and 83 revealed that Ile(80) and Arg(83) within the Bw4 motif constrain the conformation of Glu(76), primarily through a salt bridge between Arg(83) and Glu(76). This salt bridge was absent in HLA-Bw6 molecules as well as position 83 mutants of HLA-B*57:01. Mutation of the Bw4 residue Ile(80) also disrupted this salt bridge, providing further insight into the role that position 80 plays in mediating KIR3DL1 recognition. Thus, the strict conformation of HLA-Bw4 allotypes, held in place by the Glu(76)-Arg(83) interaction, facilitates KIR3DL1 binding, whereas Bw6 allotypes present a platform on the α1 helix that is less permissive for KIR3DL1 binding.


Subject(s)
Epitopes , HLA-B Antigens , HLA-B8 Antigen , Receptors, KIR3DL1 , Amino Acid Motifs , Cell Line , Epitopes/genetics , Epitopes/immunology , HLA-B Antigens/genetics , HLA-B Antigens/immunology , HLA-B8 Antigen/genetics , HLA-B8 Antigen/immunology , Humans , Killer Cells, Natural/cytology , Killer Cells, Natural/immunology , Mutation , Receptors, KIR3DL1/genetics , Receptors, KIR3DL1/immunology
18.
Nature ; 479(7373): 401-5, 2011 Oct 23.
Article in English | MEDLINE | ID: mdl-22020283

ABSTRACT

Members of the killer cell immunoglobulin-like receptor (KIR) family, a large group of polymorphic receptors expressed on natural killer (NK) cells, recognize particular peptide-laden human leukocyte antigen (pHLA) class I molecules and have a pivotal role in innate immune responses. Allelic variation and extensive polymorphism within the three-domain KIR family (KIR3D, domains D0-D1-D2) affects pHLA binding specificity and is linked to the control of viral replication and the treatment outcome of certain haematological malignancies. Here we describe the structure of a human KIR3DL1 receptor bound to HLA-B*5701 complexed with a self-peptide. KIR3DL1 clamped around the carboxy-terminal end of the HLA-B*5701 antigen-binding cleft, resulting in two discontinuous footprints on the pHLA. First, the D0 domain, a distinguishing feature of the KIR3D family, extended towards ß2-microglobulin and abutted a region of the HLA molecule with limited polymorphism, thereby acting as an 'innate HLA sensor' domain. Second, whereas the D2-HLA-B*5701 interface exhibited a high degree of complementarity, the D1-pHLA-B*5701 contacts were suboptimal and accommodated a degree of sequence variation both within the peptide and the polymorphic region of the HLA molecule. Although the two-domain KIR (KIR2D) and KIR3DL1 docked similarly onto HLA-C and HLA-B respectively, the corresponding D1-mediated interactions differed markedly, thereby providing insight into the specificity of KIR3DL1 for discrete HLA-A and HLA-B allotypes. Collectively, in association with extensive mutagenesis studies at the KIR3DL1-pHLA-B*5701 interface, we provide a framework for understanding the intricate interplay between peptide variability, KIR3D and HLA polymorphism in determining the specificity requirements of this essential innate interaction that is conserved across primate species.


Subject(s)
HLA-B Antigens/chemistry , HLA-B Antigens/immunology , Receptors, KIR3DL1/chemistry , Receptors, KIR3DL1/immunology , Amino Acid Sequence , Binding Sites/genetics , HLA-B Antigens/genetics , Humans , Models, Molecular , Mutant Proteins/chemistry , Mutant Proteins/genetics , Mutant Proteins/immunology , Polymorphism, Genetic/genetics , Protein Structure, Tertiary , Receptors, KIR3DL1/genetics , Structure-Activity Relationship , beta 2-Microglobulin/chemistry , beta 2-Microglobulin/immunology
19.
Nature ; 467(7317): 844-8, 2010 Oct 14.
Article in English | MEDLINE | ID: mdl-20944746

ABSTRACT

The pre-T-cell antigen receptor (pre-TCR), expressed by immature thymocytes, has a pivotal role in early T-cell development, including TCR ß-selection, survival and proliferation of CD4(-)CD8(-) double-negative thymocytes, and subsequent αß T-cell lineage differentiation. Whereas αßTCR ligation by the peptide-loaded major histocompatibility complex initiates T-cell signalling, pre-TCR-induced signalling occurs by means of a ligand-independent dimerization event. The pre-TCR comprises an invariant α-chain (pre-Tα) that pairs with any TCR ß-chain (TCRß) following successful TCR ß-gene rearrangement. Here we provide the basis of pre-Tα-TCRß assembly and pre-TCR dimerization. The pre-Tα chain comprised a single immunoglobulin-like domain that is structurally distinct from the constant (C) domain of the TCR α-chain; nevertheless, the mode of association between pre-Tα and TCRß mirrored that mediated by the Cα-Cß domains of the αßTCR. The pre-TCR had a propensity to dimerize in solution, and the molecular envelope of the pre-TCR dimer correlated well with the observed head-to-tail pre-TCR dimer. This mode of pre-TCR dimerization enabled the pre-Tα domain to interact with the variable (V) ß domain through residues that are highly conserved across the Vß and joining (J) ß gene families, thus mimicking the interactions at the core of the αßTCR's Vα-Vß interface. Disruption of this pre-Tα-Vß dimer interface abrogated pre-TCR dimerization in solution and impaired pre-TCR expression on the cell surface. Accordingly, we provide a mechanism of pre-TCR self-association that allows the pre-Tα chain to simultaneously 'sample' the correct folding of both the V and C domains of any TCR ß-chain, regardless of its ultimate specificity, which represents a critical checkpoint in T-cell development. This unusual dual-chaperone-like sensing function of pre-Tα represents a unique mechanism in nature whereby developmental quality control regulates the expression and signalling of an integral membrane receptor complex.


Subject(s)
Protein Multimerization , Receptors, Antigen, T-Cell/chemistry , Receptors, Antigen, T-Cell/metabolism , Crystallography, X-Ray , Gene Rearrangement, T-Lymphocyte/genetics , Humans , Models, Molecular , Mutation , Protein Folding , Protein Structure, Tertiary , Receptors, Antigen, T-Cell/genetics , Receptors, Antigen, T-Cell, alpha-beta/chemistry , Receptors, Antigen, T-Cell, alpha-beta/metabolism , Signal Transduction , Solutions , T-Lymphocytes/cytology , T-Lymphocytes/immunology , T-Lymphocytes/metabolism
20.
Biochem J ; 462(2): 279-89, 2014 Sep 01.
Article in English | MEDLINE | ID: mdl-24957128

ABSTRACT

Legionella pneumophila is an opportunistic pathogen that replicates within alveolar macrophages resulting in the onset of severe atypical pneumonia. Previously we have identified Lpg1905, a eukaryotic-type ecto-NTPDase (nucleoside triphosphate diphosphohydrolase) from L. pneumophila that was required for optimal intracellular replication and virulence in a mouse lung infection model. In the present study, we characterized the activity of a second eukaryotic-type NTPDase, Lpg0971, from L. pneumophila. We observed that recombinant Lpg0971 hydrolysed only ATP and exhibited divalent cation preference for manganese (II) ions. Similar to lpg1905, an lpg0971 mutant carrying the plasmid pMIP was attenuated in a mouse lung infection model and impaired for replication in human macrophages and amoebae. Increased trafficking of the LCV (Legionella-containing vacuole) to a LAMP-1 (lysosome-associated membrane protein-1)-positive compartment was observed for both the lpg1905 and lpg0971 mutants carrying pMIP. Complementation with either lpg1905 or lpg0971 restored intracellular replication, suggesting that a minimum level of ATPase activity was required for this function. A double lpg1905/0971 mutant was not more impaired for intracellular replication than the single mutants and complementation of the double mutant with lpg0971, but not lpg1905, restored intracellular replication. This suggested that although the NTPDases have overlapping activities they have distinct functions. Unlike many eukaryotic-type proteins from L. pneumophila, neither Lpg1905 nor Lpg0971 were translocated into the host cell by the Dot/Icm (defective in organelle trafficking/intracellular multiplication) type IV secretion system. Overall our data suggest that the ability of L. pneumophila to replicate in eukaryotic cells relies in part on the ability of the pathogen to hydrolyse ATP within an intracellular compartment.


Subject(s)
Adenosine Triphosphatases/metabolism , Antigens, CD/metabolism , Apyrase/metabolism , Bacterial Proteins/metabolism , Legionella pneumophila/enzymology , Adenosine Triphosphatases/genetics , Adenosine Triphosphate/metabolism , Animals , Antigens, CD/genetics , Apyrase/genetics , Bacterial Proteins/genetics , Calcium/pharmacology , Cations, Divalent , Cell Line , Female , Host-Pathogen Interactions , Humans , Hydrogen-Ion Concentration , Hydrolysis , Legionella pneumophila/physiology , Legionnaires' Disease/metabolism , Legionnaires' Disease/microbiology , Macrophages/microbiology , Magnesium/pharmacology , Mice , Mutation , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Virulence , Zinc/pharmacology
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