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1.
J Intellect Disabil Res ; 68(3): 237-247, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37964712

ABSTRACT

BACKGROUND: Individuals with Down syndrome (DS) are born with and develop many health-related complications. The purpose of this study was to determine the longitudinal functional fitness profile of adults with DS. METHODS: The functional fitness of adults with DS was tested twice, 12 years apart. Sixty-six adults with DS were tested for body mass, stature and 10 functional fitness tests. Data were categorised according to gender and age-specific categories. RESULTS: Static balance, shoulder flexibility, trunk strength and aerobic capacity deteriorated significantly with medium to large effect sizes for both DS men and women (most age categories). For women, dynamic balance deteriorated significantly, and for men, leg- and upper body-strength deteriorated significantly. CONCLUSIONS: Practitioners working in the field of adapted physical activity should take cognisance of the functional fitness ageing profile of adults with DS and timeously develop habitual physical activity interventions to reduce the effect of accelerated ageing experienced by this population.


Subject(s)
Down Syndrome , Physical Fitness , Adult , Male , Humans , Female , Longitudinal Studies , Exercise , Aging
2.
J Intellect Disabil Res ; 64(10): 770-781, 2020 10.
Article in English | MEDLINE | ID: mdl-32808345

ABSTRACT

BACKGROUND: Studies conducted on adults with Down syndrome have demonstrated the improvement of functional fitness (aerobic capacity, muscular strength, balance, flexibility, functional ability, body mass or body mass index) with varying exercise modalities but often with one or two components in isolation. Such modalities included walking, running, cycling, rowing or resistance training. Freestyle swim training has shown significant improvements of all parameters associated with functional fitness in the general population. Swimming is an aerobic activity where many of the large muscle groups are involved and may provide more functional fitness benefits. As a consequence, the purpose of our study was to investigate the effect of freestyle swim training on the functional fitness of adults with Down syndrome. METHODS: Twenty-six adults with Down syndrome (33 ± 6 years; 34 ± 9 kg/m2 ) were randomly allocated to an exercise (n = 13; 81.3 kg) or control group (n = 13; 81.5 kg). The exercise group performed 8 weeks of freestyle swim training, three times a week, 30 min per session (increased to 40 min after 4 weeks). To evaluate differences between groups, a one-way analysis of variance was used, controlling for differences at baseline. RESULTS: After 8 weeks of training, the results showed significant differences between the exercise and control group for body mass, body mass index, aerobic capacity, dynamic balance, muscular strength, 12-m swim time and functional ability (P < 0.05). Effect sizes ranged from small to large. CONCLUSIONS: Various components of functional fitness improved significantly after an intervention period of freestyle swim training. The collective improvement of many functional fitness parameters shown by this study may hold benefits for these often-neglected and in many cases functionally impaired individuals.


Subject(s)
Down Syndrome/rehabilitation , Exercise Therapy/methods , Physical Fitness , Swimming , Adult , Female , Humans , Male
3.
J Appl Res Intellect Disabil ; 31 Suppl 1: 144-150, 2018 Jan.
Article in English | MEDLINE | ID: mdl-28116787

ABSTRACT

BACKGROUND: Structured exercise has shown to improve parameters of functional fitness in adults with Down syndrome (DS). However, few, if any, continue to exercise after exercise intervention studies. Consequently, the purpose of this study was to determine the effects of detraining on anthropometry, aerobic capacity and functional ability of adults with DS. METHODS: In a previous study, forty-two participants either performed 12 weeks of interval training, continuous aerobic training or no training (CON). After 3 months of detraining, the same participants were tested again for anthropometry, aerobic capacity, leg strength and functional ability. RESULTS: Significant reductions in maximal aerobic capacity, time to exhaustion and both functional test items were reported for both exercise groups compared to CON (p < .05). No significant differences were reported between the exercise groups concerning aerobic and functional capacity reductions. CONCLUSION: Detraining occurred significantly in both exercise groups regarding parameters associated with aerobic and functional capacity.


Subject(s)
Body Height/physiology , Body Weight/physiology , Down Syndrome/rehabilitation , Exercise Test , Oxygen Consumption/physiology , Physical Conditioning, Human/physiology , Physical Fitness/physiology , Adult , Body Mass Index , Female , Follow-Up Studies , Humans , Male , Sedentary Behavior , Young Adult
4.
J Intellect Disabil Res ; 61(1): 83-88, 2017 01.
Article in English | MEDLINE | ID: mdl-27862519

ABSTRACT

BACKGROUND: The purpose of the study was to determine if the regression formula developed for the prediction of maximum heart rate (HR) is valid for adults with Down syndrome (DS). METHODS: Thirty-six adults with DS (31.7 ± 6.8 years; 20 men, 16 women) completed a maximal aerobic test. Maximum HR and VO2 peak were measured directly on a motorised treadmill with a metabolic analyser. Predicted HR was estimated with the regression equation developed for individuals with DS (Fernhall et al. 2001). Differences between measured versus predicted maximum HR were assessed with a dependent T-test and the relationship with Pearson correlational analyses. Agreement was assessed with Bland-Altman analysis. RESULTS: There was a significant difference between directly measured maximum HR and predicted maximum HR (P < 0.01). There was no significant relationship between these variables. Bland-Altman analysis indicated that there was measurement bias (+4.7) and large limits of agreement (+26.7 and -17.4) between measured and predicted maximum HR. The Bland-Altman plot also demonstrated the presence of heteroscedasticity. CONCLUSIONS: The results indicate that the regression formula developed for individuals with DS was not accurate in this sample of DS adults aged 19 to 46 years. Future studies should develop different prediction equations for more specific age and body mass index categories for individuals with DS.


Subject(s)
Down Syndrome/physiopathology , Exercise Test/standards , Heart Rate/physiology , Adult , Female , Humans , Male , Middle Aged , Young Adult
5.
J Intellect Disabil Res ; 60(4): 322-334, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26805768

ABSTRACT

BACKGROUND: A large percentage of adults with Down syndrome (DS) are overweight and have extremely low aerobic capacities compared with the general population and persons with intellectual disability without DS. Previous aerobic training intervention studies showed limited potential to significantly ameliorate anthropometrical and cardiovascular variables. The primary purpose of this study was to determine the effect of continuous aerobic training (CAT) vs. interval training (IT) on selected anthropometrical, health, physical and functional parameters of adults with DS. METHODS: Forty-two adults with DS (25 men and 17 women) and a mean age of 33.8 (±8.6) years were randomly allocated to one of three groups (IT, CAT and control). Training was performed for 12 weeks. The IT group performed 10-30 s all out sprints with 90 s (1:3 work-rest ratio) of low cadence, low intensity cycling or walking. The CAT group performed continuous cycling and walking at an intensity of 70-80% of VO2 peak. Heart rate monitors were used for monitoring training intensities. After 6 weeks of training, the intensity of the CAT was increased to 85% of VO2 peak, whilst the intensity of the IT group remained 'all out'. An increase of 5 min in duration was implemented after 6 weeks for both training groups. To evaluate pre-post differences between groups, a repeated analysis of covariance with post hoc Bonferroni test was performed RESULTS: After 12 weeks of training, body weight and body mass index decreased significantly more in the IT group compared with control and CAT (P < 0.05). Participants in the IT group decreased their body weight from 71.4 ± 8 to 69.4 ± 8 kg and their body mass index from 29.3 ± 4 to 28.5 ± 4 kg/m2 . Significant ameliorations for functional parameters and leg strength were shown for CAT compared with control (P < 0.05). Participants in the CAT group improved their performance in the 6 minute walk distance (499 ± 78 to 563 ± 75 m), 8-ft up-and-go (5.9 ± 1.2 to 4.8 ± 0.9) and leg strength (13.1 ± 2 to 15.2 ± 2). VO2 peak and time to exhaustion significantly improved in both the IT and CAT group compared with control (P < 0.01). Moreover, a significant improvement for relative VO2 peak was also determined for IT compared with CAT (P < 0.05). Participants in the IT group increased their VO2 peak from 32 ± 8 to 37 ± 8 mL/min/kg. Submaximal heart rate and VO2 values improved significantly within both exercise groups (P < 0.05). CONCLUSION: Interval training and CAT can both be pursued by adults with DS to positively impact on various parameters of anthropometry, fitness and functional ability, with IT more appropriate for improving body weight and aerobic capacity.

6.
J Intellect Disabil Res ; 57(9): 826-36, 2013 Sep.
Article in English | MEDLINE | ID: mdl-22775247

ABSTRACT

BACKGROUND: It is well established that there is a relationship between physical inactivity and increased risk for diseases of lifestyle. Persons with Down syndrome (DS) are especially at risk because of physical and health impairments, as well as perceived and real barriers to participation in exercise. The purpose of the study was to establish the functional fitness capacity and predictors of performance of DS adults. METHODS: Data were collected at various intellectual disability centres and private homes in seven provinces of South Africa. Three hundred and seventy-one DS individuals (199 men and 172 women) from 18 to 66 years were tested for balance, flexibility, coordination, muscular strength and endurance, aerobic capacity and functional ability. Data were categorised according to gender and age groups (18-25, 26-35, 36-45, and >45 years). Multiple regression analysis was performed to determine the relationship between the functional task and physical test items. RESULTS: Down syndrome men performed significantly better on all but two tests compared with the women (P < 0.05). DS women performed better on the sit-and-reach flexibility item and the chair stand test; however, differences were not statistically significant from the men. Significant differences across age groups were observed for nine of the 13 functional fitness tests (P < 0.05). Muscular strength items, especially leg strength, significantly predicted functional performance in DS men and women. Aerobic capacity only predicted functional performance in DS men and sit-and-reach flexibility and dynamic balance only in DS women. CONCLUSIONS: Findings of this study provide important information on the functional capacity of DS adults and show which physical attributes contribute to functional performance. Consequently appropriate training programmes can be tailored for this population whom is known to have poor functional fitness.


Subject(s)
Down Syndrome/physiopathology , Life Style , Physical Endurance/physiology , Physical Fitness/physiology , Adolescent , Adult , Aged , Body Mass Index , Exercise/physiology , Female , Humans , Male , Middle Aged , Motor Skills/physiology , Muscle Strength/physiology , Postural Balance/physiology , Predictive Value of Tests , Regression Analysis , South Africa , Young Adult
7.
Mol Cell Biol ; 7(9): 3107-12, 1987 Sep.
Article in English | MEDLINE | ID: mdl-2823118

ABSTRACT

In both humans and mice, two genes encode phosphoglycerate kinase, a key enzyme in the glycolytic pathway. The pgk-1 gene is expressed in all somatic cells, is located on the X chromosome, and contains 10 introns. The pgk-2 gene is expressed only in sperm cells, is located on an autosome, and has no introns. The nucleotide sequence of the pgk-2 gene suggests that it arose from pgk-1 more than 100 million years ago by RNA-mediated gene duplication. The pgk-2 gene may, then, be a transcribed retroposon. Thus, gene duplication by retroposition may have been used as a mechanism for evolutionary diversification.


Subject(s)
Phosphoglycerate Kinase/genetics , Testis/physiology , Amino Acid Sequence , Animals , Base Sequence , Biological Evolution , Chromosome Mapping , DNA/genetics , DNA Restriction Enzymes , Gene Expression Regulation , Genes , Male , Mice , Molecular Sequence Data , RNA, Messenger/genetics , Testis/enzymology , Transcription, Genetic
8.
Res Dev Disabil ; 48: 176-85, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26599295

ABSTRACT

AIM: The purpose of the study was to explore the test-retest reliability and minimal detectable change of selected functional fitness test items in adults with Down syndrome. METHODS: Forty-three adults with Down syndrome (24 men and 19 women) aged 18-50 years completed a battery of tests twice in a two-week period. The battery of tests consisted of two balance items, two flexibility items, five muscular strength and endurance items, two aerobic items, and one functional task. All items were considered valid and reliable tests in a general elderly or intellectually disabled population. The test-retest relative reliability for all repeated tests was assessed with intraclass correlation coefficient performing one-way analysis of variance. The test-retest absolute variability was measured by using the standard error of measurement (SEM) to calculate the minimal detectable change at the 90% confidence interval (MDC90). Reliability data was visualised with a Bland-Altman plot. RESULTS: All tests showed excellent intraclass correlation coefficients (ICC's>0.9). All SEM values demonstrated acceptable measurement precision (SEM

Subject(s)
Down Syndrome , Ergometry/methods , Physical Fitness , Adult , Down Syndrome/diagnosis , Down Syndrome/physiopathology , Down Syndrome/psychology , Female , Humans , Male , Middle Aged , Muscle Strength , Physical Fitness/physiology , Physical Fitness/psychology , Postural Balance , Reproducibility of Results , South Africa , Walking
9.
Cardiovasc Res ; 29(5): 676-81, 1995 May.
Article in English | MEDLINE | ID: mdl-7606757

ABSTRACT

OBJECTIVE: The aim was to compare activities of the type A and type B natriuretic factor genes during development of cardiac hypertrophy by use of a non-radioactive method designed for assessment of stable atrial and brain natriuretic factor (ANF, BNF) transcript levels in biopsy sized tissue samples. METHODS: At 1 and 7 days after aortocaval shunt or sham surgery in rats, quantitative reverse transcriptase mediated polymerase chain reaction (Q-RT-PCR) was used to determine mRNA levels in cardiac tissues. Phosphoglycerate kinase-1 (PGK-1) mRNA levels served as an external standard for Q-RT-CR. RESULTS: The shunt increased left ventricular end diastolic pressure at days 1 and 7, and cardiac weight was increased by day 7. By day 1, left ventricular BNF mRNA levels were twice those of controls, whereas ANF mRNA levels were not changed. By day 7, left ventricular BNF mRNA levels were increased 15-fold, and those for ANF were increased fivefold; the BNF mRNAs were also increased in right atria and right ventricle, about fivefold in both cases. CONCLUSIONS: Both natriuretic factor genes were activated by cardiac volume overload, and the increase in the level of left ventricular BNF transcripts-observed for the first time-was in fact more rapid and exceeded that of ANF. The Q-RT-PCR assay will be of value to investigate the response to increased work load of cardiac muscle in vivo.


Subject(s)
Atrial Natriuretic Factor/genetics , Cardiomegaly/genetics , Gene Expression Regulation , Myocardium/metabolism , Nerve Tissue Proteins/genetics , Animals , Base Sequence , DNA Primers/genetics , Male , Molecular Sequence Data , Natriuretic Peptide, Brain , Polymerase Chain Reaction , Rats , Rats, Wistar
10.
Gene ; 60(1): 65-74, 1987.
Article in English | MEDLINE | ID: mdl-3440520

ABSTRACT

We report the cloning of the mouse pgk-1 gene encoding the somatic cell isoform of the enzyme phosphoglycerate kinase. The gene is contained within a 16-kb region of the X chromosome and is interrupted by at least ten introns. The promoter region of the pgk-1 gene is rich in G and C nucleotides and contains five copies of the hexadeoxynucleotide, GGGCGG, the potential binding site for the Sp 1 transcription factor, a CCAAT sequence, but no TATA box. This promoter functions following DNA-mediated transfection into mammalian cells. The promoter of the mouse pgk-1 gene is homologous to the human pgk-1 promoter. A number of conserved motifs in the promoter may indicate a significant role for these sequences in expression of the pgk-1 gene.


Subject(s)
Cloning, Molecular , Gene Expression Regulation , Phosphoglycerate Kinase/genetics , Promoter Regions, Genetic , Transfection , Amino Acid Sequence , Animals , Base Sequence , Electrophoresis, Agar Gel , HeLa Cells , Mice , Molecular Sequence Data
11.
Biotechniques ; 18(1): 78-80, 82-3, 1995 Jan.
Article in English | MEDLINE | ID: mdl-7702858

ABSTRACT

The ability to accurately measure mRNA levels in samples of total RNA is essential for studies on control of gene expression. The mRNAs from the housekeeping gene for phosphoglycerate kinase (PGK-1) can serve as a quality control for RNA samples. We describe an enzyme-linked immunosorbent assay (ELISA) method for mRNA determination by Q-RT-PCR, a quantitative reverse transcriptase-mediated PCR assay with competitive internal standards. After PCR, two biotinylated capture primers, one specific for PGK-1 cDNA and another one for internal standard, are annealed in separate assays so that each can attach DNA to a streptavidin-coated microplate. The captured DNA is either internally labeled with digoxigenin (DIG) or is "developed" after annealing with DIG-labeled primers. Bound DNA is then quantitated by adding DIG-specific antibody with attached alkaline phosphatase and measuring phosphatase activity with a chromogenic substrate and a plate reader. We compared different capturing methods and various primers labeled with DIG at their 3' ends. We determined that amplified PGK-1 DNA specifically captured with biotinylated primers was efficiently assayed with random p(dN)6-DIG.


Subject(s)
DNA Primers , Digoxigenin/immunology , Phosphoglycerate Kinase/genetics , Polymerase Chain Reaction , RNA, Messenger/analysis , Base Sequence , Enzyme-Linked Immunosorbent Assay , Molecular Sequence Data
12.
Immunobiology ; 164(1): 68-77, 1983 Feb.
Article in English | MEDLINE | ID: mdl-6682828

ABSTRACT

The sequential appearance of the IgG antibody clones constituting the primary, secondary or tertiary response to BSA was studied in individual rabbits by relating antibody titers, antibody affinities, and clonal spectra obtained by IEF. The results showed that after a single i.v. injection of BSA, the primary response IgG antibodies peaked at day 11 and had a constant and low average affinity during the first 20 days. A slow rise of affinity was observed during the following 20 days. In this period, new IgG antibody clones appeared, though antibody titers decreased. A number of these newly appearing, so-called late-phase clones were isolated by preparative IEF. Their affinities to BSA were high. Secondary responses showed the rapid rise of both titers and antibody affinities typical for the activity of B-memory AFC. One animal immunized for a tertiary response showed a still further increase of antibody affinity in its late phase. These results, together with those described in two earlier papers (1, 2), demonstrate that primary immunization, apart from triggering preexisting IgG AFCP into production of antibodies having low affinity, elicits the origination of IgG (B-memory)-AFCP capable of producing high affinity IgG upon antigenic triggering, and show that some of these may already be triggered during the ongoing response, thereby giving rise to the so-called late phase in the primary IgG antibody response.


Subject(s)
Antibody-Producing Cells/immunology , Immunoglobulin G/biosynthesis , Plasma Cells/immunology , Animals , Antibody Specificity , Immunologic Memory , Isoelectric Point , Rabbits , Serum Albumin, Bovine/immunology , Time Factors
13.
Brain Res ; 113(3): 551-61, 1976 Sep 03.
Article in English | MEDLINE | ID: mdl-182325

ABSTRACT

Cyclic AMP was found in perfusates of push-pull cannula's, chronically placed in the lateral ventricle of freely moving rats. After addition of norepinephrine, dopamine or adenosine to the perfusates the output of cyclic AMP was enhanced, whilst serotonin and histamine were found to be ineffective. The effects of noradrenaline and dopamine on cyclic AMP were found to be mediated by different receptors: haloperidol antagonized only the dopamine response. The effect of norepinephrine was mimicked by isoprenaline, a beta-adrenergic agonist, but was not blocked by propranolol. L-DOPA, given intraperitoneally, increased cyclic AMP levels in the perfusate. We conclude that the release of cyclic AMP into the extracellular medium is a normally occurring phenomenon in brain tissue.


Subject(s)
Brain/metabolism , Cyclic AMP/metabolism , Adenosine/pharmacology , Animals , Brain/drug effects , Cerebral Ventricles/metabolism , Clonidine/pharmacology , Cyclic AMP/cerebrospinal fluid , Dopamine/administration & dosage , Dopamine/pharmacology , Histamine/pharmacology , Isoproterenol/pharmacology , Levodopa/pharmacology , Male , Norepinephrine/administration & dosage , Norepinephrine/pharmacology , Perfusion/methods , Rats , Receptors, Adrenergic/drug effects , Serotonin/pharmacology
14.
Exp Cell Res ; 207(2): 421-9, 1993 Aug.
Article in English | MEDLINE | ID: mdl-8344390

ABSTRACT

We examined the transcriptional activity profile of the gene for atrial natriuretic factor (ANF) in mouse embryonal carcinoma P19 cells which had been induced for in vitro cardiac myogenesis. Differentiation was assessed visually, by the degree of spontaneous beating activity, and by the appearance of striated muscle structures detected by immunofluorescence with a myosin heavy chain antibody. Northern blot analysis of RNA isolated at regular intervals throughout the differentiation program revealed abundant cardiac alpha-actin transcripts beginning at Day 6, reaching maximum levels during Days 7 to 8 and declining to low levels by Days 12 to 15. Throughout this period, the transcriptional profile of the ANF gene was similar to that of alpha-actin but at lower levels; thus, in vivo stages of abundant ANF and structural muscle gene transcription were not reached and these gene expression states appear to be uncoupled. Using the more sensitive assay of reverse transcriptase-mediated polymerase chain reactions, we observed the presence of ANF transcripts even in small samples of muscle-induced P19 cells and not in neuron-induced or undifferentiated P19 cells. Induced ANF transcript levels reached about 5-10% that found in adult atrium muscle tissue. ANF gene activity was further corroborated by nuclear transcriptional run-on assays. The P19 stem cell model system will be of value in the study of early events during cardiac muscle commitment and differentiation.


Subject(s)
Atrial Natriuretic Factor/genetics , Gene Expression/genetics , Genes/genetics , Myocardium/cytology , Teratoma/pathology , Actins/genetics , Animals , Atrial Natriuretic Factor/physiology , Base Sequence , Blotting, Northern , Cell Differentiation/physiology , Dimethyl Sulfoxide/pharmacology , Fluorescent Antibody Technique , Mice , Molecular Sequence Data , Polymerase Chain Reaction , RNA, Messenger/analysis , RNA, Messenger/genetics , Time Factors , Transcription, Genetic , Tumor Cells, Cultured
15.
Biochem Biophys Res Commun ; 199(2): 954-61, 1994 Mar 15.
Article in English | MEDLINE | ID: mdl-8135846

ABSTRACT

We assessed the temporal transcriptional activity profiles of the genes for type-B natriuretic factor, BNF, the isoform ANF, and other cardiac muscle proteins in differentiating cultures derived from multipotential mouse cell lines. P19 embryonal carcinoma cells and D3 embryonic stem cells were induced for in vitro cardiac myogenesis; RNA was isolated at regular intervals throughout the differentiation programs, and mRNAs were detected by reverse transcriptase mediated polymerase chain reactions. The transcriptional activation profiles of the ANF and BNF gene were similar, but there were quantitative differences that were best assayed by use of competitive internal DNA standards. The levels of induced BNF transcripts were highest in the P19 developmental system reaching approximately 10% of adult mouse ventricular muscle levels; those for ANF were lower, but also readily detected. The cell lines may be used to define the regulatory control elements for natriuretic factor gene expression, in stably transfected cell lines, during cardiac muscle growth.


Subject(s)
Atrial Natriuretic Factor/biosynthesis , Gene Expression Regulation , Heart/embryology , Interleukin-6 , Stem Cells/metabolism , Animals , Atrial Natriuretic Factor/genetics , Base Sequence , Cell Line , DNA Primers , DNA, Complementary/biosynthesis , Gene Expression Regulation/drug effects , Growth Inhibitors/pharmacology , Introns , Leukemia Inhibitory Factor , Lymphokines/pharmacology , Mice , Molecular Sequence Data , Myocardium/cytology , Natriuretic Peptide, Brain , Polymerase Chain Reaction/methods , RNA, Messenger/biosynthesis , Recombinant Proteins/pharmacology , Stem Cells/cytology , Stem Cells/drug effects , Teratoma , Transcription, Genetic , Transfection , Tumor Cells, Cultured
16.
Curr Genet ; 19(4): 309-12, 1991 Apr.
Article in English | MEDLINE | ID: mdl-1831072

ABSTRACT

In the mtDNA of Chlamydomonas reinhardtii, a unicellular green alga, we have identified a set of short repeated sequences up to 65 nucleotides long, each of which contains the palindromic consensus motif CTCGG(N4-14)CCGAG. Most of these repeated elements are localized in spacer regions that flank the transcribed coding regions of C. reinhardtii mtDNA. These algal mitochondrial repeats have features reminiscent of short repeats in some fungal mtDNAs, such as GC clusters in Saccharomyces cerevisiae and PstI palindromes in Neurospora crassa. The location of these elements suggests that they could play a role in gene expression, e.g., post-transcriptional processing, in C. reinhardtii mitochondria.


Subject(s)
Chlamydomonas/genetics , DNA, Mitochondrial/genetics , Repetitive Sequences, Nucleic Acid , Base Sequence , Consensus Sequence , Gene Expression Regulation , Molecular Sequence Data , Neurospora crassa/genetics , RNA Processing, Post-Transcriptional
17.
Curr Genet ; 14(6): 583-90, 1988 Dec.
Article in English | MEDLINE | ID: mdl-3242866

ABSTRACT

Only three tRNA genes are present within a sequenced 12.35 kbp region of the 15.8 kbp mtDNA of Chlamydomonas reinhardtii, a unicellular green alga. The corresponding tRNAs, whose anticodons are specific for TGG (Trp), CAA/G (Gln) and ATG (Met) codons, all display conventional secondary structures. The tRNA(Met) gene encodes an elongator rather than initiator species. The standard genetic code is used in C. reinhardtii mitochondria, but codon distribution is highly biased: in a collection of six identified protein coding genes, nine codons (including TGA) are not used at all, while four other sense codons occur very infrequently. In spite of the absence of certain codons, a minimum of 23 tRNAs (assuming separate initiator and elongator tRNAs(Met) are used) is needed to translate the C. reinhardtii mitochondrial genetic code. It appears unlikely that this minimal tRNA set is encoded by C. reinhardtii mtDNA.


Subject(s)
Chlamydomonas/genetics , Genetic Code , Mitochondria , RNA, Transfer/genetics , Base Sequence , Codon/genetics , DNA, Mitochondrial/genetics , Genes , Molecular Sequence Data , Nucleic Acid Conformation , Phylogeny , Restriction Mapping , Transcription, Genetic
18.
Philos Trans R Soc Lond B Biol Sci ; 319(1193): 135-47, 1988 May 31.
Article in English | MEDLINE | ID: mdl-2901763

ABSTRACT

The mitochondrial genome of Chlamydomonas reinhardtii, a unicellular green alga, is a linear 15.8 kilobase pair (kbp) molecule. In gene arrangement and mode of expression, as well as in size, it differs radically from the large (200-2400 kbp) mitochondrial genomes of higher plants. Heterologous hybridization experiments and nucleotide sequence analysis have revealed that C. reinhardtii mitochondrial DNA (mtDNA) is a compactly organized genome specifying at least eight proteins, a minimum of three transfer RNAs, and large subunit (LS) and small subunit (SS) ribosomal RNAs. Both strands of the mtDNA encode genetic information, with genes organized into perhaps a single transcriptional unit on each strand. Stable transcripts have been identified by Northern hybridization analysis, and transcript termini have been mapped by primer extension and S1 nuclease protection experiments. The results suggest that mature RNAs, which virtually saturate the genome, are generated by precise endonucleolytic cleavage of long precursors, with specific motifs (both primary sequence and secondary structure) implicated as processing signals. Codon usage in C. reinhardtii mitochondria is highly biased, with eight codons entirely absent from all protein-coding genes; however, even though codon usage is restricted, it appears that C. reinhardtii mtDNA cannot encode the minimum number of tRNAs needed to support mitochondrial protein synthesis. The most striking feature of C. reinhardtii mtDNA is the division of SS and LS rRNA genes into a number of separate subgenic coding segments ('modules') that are interspersed with one another and with protein-coding and tRNA genes. We have identified abundant small RNAs, transcribed from these modules, that approximate to the latter in size. This indicates that splicing of rRNA 'pieces' does not occur in this system. Rather, the mature rRNAs apparently exist and function as non-covalent complexes of small RNAs (four in SS rRNA, at least eight in LS rRNA), held together by intermolecular base pairing. These complexes contain all the conserved elements of the minimal secondary structures that define the functional core of conventional LS and SS rRNAs.


Subject(s)
Chlamydomonas/genetics , DNA, Mitochondrial/genetics , Genes , Transcription, Genetic , Base Sequence , Codon , Humans , Models, Molecular , Molecular Sequence Data , Nucleic Acid Conformation , Plants/genetics , RNA, Ribosomal/genetics , Species Specificity , Triticum/genetics
19.
EMBO J ; 5(1): 21-8, 1986 Jan.
Article in English | MEDLINE | ID: mdl-3007117

ABSTRACT

A gene homologous to unassigned reading frame (URF) 5 of the mammalian mitochondrial genome has been identified in the mitochondrial DNA of the unicellular green alga, Chlamydomonas reinhardtii. The algal URF 5 gene is closely flanked by the gene for subunit I of cytochrome oxidase (COI) and by an unidentified gene (ORF x). The URF 5 and ORF x genes are transcribed in the same direction, but opposite to that of the COI gene. Transcript analysis reveals a 1.9-kb mRNA whose major 5' terminus maps to the putative URF 5 initiation codon and whose 3' end abuts the 5' end of the ORF x transcript. Characterization of other C. reinhardtii mitochondrial RNAs suggests a general pattern of abutting transcripts and mature mRNAs having little or no 5' leader sequence. While this is reminiscent of post-transcriptional processing in animal mitochondria, different mechanisms must be employed in the two systems, since tRNA sequences (which appear to function as transcript processing signals in animal mitochondria) do not generally flank protein coding sequences in the C. reinhardtii mitochondrial genome. Nevertheless, characteristic secondary structure motifs do occur within the 3'-terminal regions of C. reinhardtii mitochondrial mRNAs, and their location close to mRNA termini suggests that such motifs may play a role in directing the precise endonucleolytic cleavage of long primary transcripts.


Subject(s)
Chlamydomonas/genetics , DNA, Mitochondrial/genetics , Genes , Mitochondria/metabolism , Transcription, Genetic , Amino Acid Sequence , Base Sequence , Codon , DNA Restriction Enzymes , Electron Transport Complex IV/genetics , Nucleic Acid Conformation , Sequence Homology, Nucleic Acid
20.
Nucleic Acids Res ; 14(21): 8399-411, 1986 Nov 11.
Article in English | MEDLINE | ID: mdl-3024105

ABSTRACT

We present the complete nucleotide sequence of a Drosophila alpha-amylase gene and its flanking regions, as determined by cDNA and genomic sequence analysis. This gene, unlike its mammalian counterparts, contains no introns. Nevertheless the insect and mammalian genes share extensive nucleotide similarity and the insect protein contains the four amino acid sequence blocks common to all alpha-amylases. In Drosophila melanogaster, there are two closely-linked copies of the alpha-amylase gene and they are divergently transcribed. In the 5'-regions of the two gene-copies we find high sequence divergence, yet the typical eukaryotic gene expression motifs have been maintained. The 5'-terminus of the alpha-amylase mRNA, as determined by primer extension analysis, maps to a characteristic Drosophila sequence motif. Additional conserved elements upstream of both genes may also be involved in amylase gene expression which is known to be under complex controls that include glucose repression.


Subject(s)
Drosophila melanogaster/genetics , Genes , Transcription, Genetic , alpha-Amylases/genetics , Amino Acid Sequence , Animals , Base Sequence , DNA Restriction Enzymes , Drosophila melanogaster/enzymology , Polymorphism, Genetic , Sequence Homology, Nucleic Acid
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