Camera traps unveil demography, social structure, and home range of six unhabituated Western chimpanzee groups in the Moyen Bafing National Park, Guinea.

Precise estimates of population dynamics and social grouping patterns are required for effective conservation of wild animal populations. It is difficult to obtain such information on non-human great apes as they have slow reproductive rates. To gain a better understanding of demography in these populations, previous research has typically involved habituation\, a process that requires years. Here, we collected data continuously over year-long periods to monitor an unhabituated population of critically endangered Western chimpanzees (Pan troglodytes verus) in the Moyen Bafing National Park, Guinea. We used two arrays of 100 camera traps that were placed opportunistically in two distinct 100 km2 sites, named Bakoun and Koukoutamba. We identified 227 individuals in Bakoun and 207 in Koukoutamba through their unique facial features. Our camera trap data make clear that these individuals belong to six and seven closed groups, respectively. Six of those groups were near-completely sampled with an average minimum size of 46.8 individuals (range: 37-58), and a mean adult sex ratio of 1.32 (range: 0.93-2.10). We described the demographic composition of these groups and use Bayesian social network analysis to understand population structure. The network analyses suggested that the social bonds within the two populations were structured by sex homophily, with male chimpanzees being more or equally likely to be observed together than other adult associations. Through estimation of minimum convex polygons, we described the minimum home range for those groups. Compared to other chimpanzee groups living in a similar environment (mosaic savanna-forest), the Moyen Bafing region seems to host a high-density of chimpanzees with small home ranges for their group size. Our research highlights the potential of camera traps for studying the demographic composition of chimpanzee populations with high resolution and obtaining crucial information on several groups in a time-efficient and cost-effective way.

CD4 receptor diversity in chimpanzees protects against SIV infection.

Human and simian immunodeficiency viruses (HIV/SIVs) use CD4 as the primary receptor to enter target cells. Here, we show that the chimpanzee CD4 is highly polymorphic, with nine coding variants present in wild populations, and that this diversity interferes with SIV envelope (Env)-CD4 interactions. Testing the replication fitness of SIVcpz strains in CD4+ T cells from captive chimpanzees, we found that certain viruses were unable to infect cells from certain hosts. These differences were recapitulated in CD4 transfection assays, which revealed a strong association between CD4 genotypes and SIVcpz infection phenotypes. The most striking differences were observed for three substitutions (Q25R, Q40R, and P68T), with P68T generating a second N-linked glycosylation site (N66) in addition to an invariant N32 encoded by all chimpanzee CD4 alleles. In silico modeling and site-directed mutagenesis identified charged residues at the CD4-Env interface and clashes between CD4- and Env-encoded glycans as mechanisms of inhibition. CD4 polymorphisms also reduced Env-mediated cell entry of monkey SIVs, which was dependent on at least one D1 domain glycan. CD4 allele frequencies varied among wild chimpanzees, with high diversity in all but the western subspecies, which appeared to have undergone a selective sweep. One allele was associated with lower SIVcpz prevalence rates in the wild. These results indicate that substitutions in the D1 domain of the chimpanzee CD4 can prevent SIV cell entry. Although some SIVcpz strains have adapted to utilize these variants, CD4 diversity is maintained, protecting chimpanzees against infection with SIVcpz and other SIVs to which they are exposed.

Systematic mapping of developmental milestones in wild chimpanzees.

Postnatal development is protracted relative to lifespan in many primates, including modern humans (Homo sapiens), facilitating the acquisition of key motor, communication and social skills that can maximize fitness later in life. Nevertheless, it remains unclear what evolutionary drivers led to extended immature periods. While the developmental milestone literature is well established in humans, insight we can gain from one-species models is limited. By comparing the timing of relatable developmental milestones in a closely related species, the chimpanzee (Pan troglodytes), we can gain further understanding of the evolution of such an extended developmental phase. To date, few studies have specifically attempted to estimate developmental milestones in a manner comparable to the human literature, and existing studies lack sufficient sample sizes to estimate which milestones are more plastic with higher inter-individual variation in the timing of their emergence. Here, we describe the emergence of gross motor, fine motor, social interaction and communication traits from a longitudinal sample of 19 wild chimpanzee infants (8 females and 11 males), Taï National Park, Côte d'Ivoire. Gross motor traits emerged at a mean of 4 months, communication traits at 12 months, social interaction traits at 14 months and fine motor traits at 15 months, with later emerging milestones demonstrating greater inter-individual variation in the timing of the emergence. This pattern of milestone emergence is broadly comparable to observations in humans, suggesting selection for a prolonged infantile phase and that sustained skills development has a deep evolutionary history, with implications for theories on primate brain development.

Lessons learned while protecting wild chimpanzees in West Africa.

Though human activities are postulated to be the main drivers of the worldwide biodiversity crisis, humans are also suggested by some to be an important part of the solution to the crisis. How can such a paradox be best solved? This paradox requires an adaptive, context-specific, dynamic solution, at a fine-grained scale that varies by location. The Wild Chimpanzee Foundation (WCF) works on the ground in three West African countries: In Côte d'Ivoire, where bushmeat consumption is a recurrent and generalized threat to wildlife, WCF used live theater performances in the villages to address this issue. Post-activity evaluations revealed that the more often individuals have been part of such awareness activities, the less they will consume bushmeat. In nearby Liberia, where illegal miners have invaded many protected areas and intact forests, the WCF supports Community Watch Teams (CWT) to patrol the Sapo National Park with Forestry Development Authority staff. Within 11 months of its creation, the CWT patrols around and in the Sapo National Park resulted in thousands of illegal miners progressively leaving the national park. In Guinea, where coexistence between humans and primates has prevailed based on religious traditions, the WCF developed a strategic approach, as the Moyen-Bafing National Park contains about 5000 chimpanzees as well as some 255 villages. Therefore, we adopted an "integrated landscape approach" whereby the community activities are planned in combination with initiatives increasing forest regeneration and connectivity in high conservation value areas. Communities in northern Guinea confronted with dramatic fluctuations due to climatic changes welcomed such activities that help them become more resilient and adaptable to those alterations. In conclusion, evidence-based information at the local level helps to resolve the conservation paradox by adapting with the local communities' context-specific dynamic approaches to enhance the conservation of great apes.

Range-wide indicators of African great ape density distribution.

Species distributions are influenced by processes occurring at multiple spatial scales. It is therefore insufficient to model species distribution at a single geographic scale, as this does not provide the necessary understanding of determining factors. Instead, multiple approaches are needed, each differing in spatial extent, grain, and research objective. Here, we present the first attempt to model continent-wide great ape density distribution. We used site-level estimates of African great ape abundance to (1) identify socioeconomic and environmental factors that drive densities at the continental scale, and (2) predict range-wide great ape density. We collated great ape abundance estimates from 156 sites and defined 134 pseudo-absence sites to represent additional absence locations. The latter were based on locations of unsuitable environmental conditions for great apes, and on existing literature. We compiled seven socioeconomic and environmental covariate layers and fitted a generalized linear model to investigate their influence on great ape abundance. We used an Akaike-weighted average of full and subset models to predict the range-wide density distribution of African great apes for the year 2015. Great ape densities were lowest where there were high Human Footprint and Gross Domestic Product values; the highest predicted densities were in Central Africa, and the lowest in West Africa. Only 10.7% of the total predicted population was found in the International Union for Conservation of Nature Category I and II protected areas. For 16 out of 20 countries, our estimated abundances were largely in line with those from previous studies. For four countries, Central African Republic, Democratic Republic of the Congo, Liberia, and South Sudan, the estimated populations were excessively high. We propose further improvements to the model to overcome survey and predictor data limitations, which would enable a temporally dynamic approach for monitoring great apes across their range based on key indicators.

Information transfer efficiency differs in wild chimpanzees and bonobos, but not social cognition.

Several theories have been generated to understand the socio-cognitive mechanisms underlying the unique cooperative abilities of humans. The 'interdependence hypothesis' posits first, that the cognitive dimension of human cooperation evolved in contexts when several individuals needed to act together to achieve a common goal, like when hunting large prey. Second, the more interdependent individuals are, the more likely they are to provide services to conspecifics in other contexts. Alternatively, the 'social tolerance hypothesis' proposes that higher social tolerance allows conspecifics to cooperate more efficiently and with a wider range of partners. We conducted the first field experimental evaluation of both hypotheses in our closest living relatives by contrasting chimpanzees to the less interdependent but more tolerant bonobos. We compared each species' performance during a cooperative task: informing conspecifics about a danger. We presented Gaboon viper models to 82 individuals from five wild communities. Chimpanzees arriving late at the snake were significantly more likely to have heard a call and less likely to startle, indicating that chimpanzees were better informed about the presence of the threat than bonobos. This stems from clear species differences in how individuals adjusted their calling decisions to the level of information already available. Chimpanzees were more likely to call and produced more alarm calls when they had not yet heard a call, whereas bonobos did so when they already heard a call. Our results confirm the link between interdependence and cooperation performance. These species differences were most likely driven by differences in motivation rather than in cognitive capacities because both species tended to consider audience knowledge in their decision to call. Our results inform theories on the evolution of human cooperation by linking inter-group competition pressure and in-group cooperative motivation and/or capability.

How isotopic signatures relate to meat consumption in wild chimpanzees: A critical reference study from Taï National Park, Côte d'Ivoire.

The roots of human hunting and meat eating lie deep in our evolutionary past shared with chimpanzees (Pan troglodytes). From the few habituated wild populations, we know that there is considerable variation in the extent to which chimpanzees consume meat. Expanding our knowledge of meat eating frequencies to more, yet unhabituated, populations requires noninvasive, indirect quantitative techniques. We here evaluate the use of stable isotopes to reconstruct meat-eating behavior in wild chimpanzees. We present hair isotope data (n = 260) of two western chimpanzee (P. troglodytes verus) groups from Taï forest (Côte d'Ivoire) and relate them to directly observed amounts of meat consumed, sex/female reproductive state, and group, while controlling for differences between individuals, seasons, and observation efforts. Succeeding seven months of hunting observations, we collected hair of 25 individuals for sequential analysis of δ15N and δ13C. Hunting success in the 7-month study period varied between the groups, with 25 successful hunts in the East group and only 8 in the North group. However, our models only found a direct relationship between amounts of meat consumed and variation within individual hair δ15N values in the East group, but not in the North group and not when comparing between individuals or groups. Although on average East group individuals consumed more than double the amount of meat than North group individuals, their δ15N values were significantly lower, suggesting that differences in microhabitat are substantial between group territories. The effect of sex/female reproductive state was significant in δ15N and δ13C, suggesting it related to access to food or feeding preferences. We conclude that several factors additional to diet are influencing and thus obscuring the isotope ratios in wild chimpanzee hair, particularly when comparing between sexes and social groups.

Lethal aggression in Pan is better explained by adaptive strategies than human impacts.

Observations of chimpanzees (Pan troglodytes) and bonobos (Pan paniscus) provide valuable comparative data for understanding the significance of conspecific killing. Two kinds of hypothesis have been proposed. Lethal violence is sometimes concluded to be the result of adaptive strategies, such that killers ultimately gain fitness benefits by increasing their access to resources such as food or mates. Alternatively, it could be a non-adaptive result of human impacts, such as habitat change or food provisioning. To discriminate between these hypotheses we compiled information from 18 chimpanzee communities and 4 bonobo communities studied over five decades. Our data include 152 killings (n = 58 observed, 41 inferred, and 53 suspected killings) by chimpanzees in 15 communities and one suspected killing by bonobos. We found that males were the most frequent attackers (92% of participants) and victims (73%); most killings (66%) involved intercommunity attacks; and attackers greatly outnumbered their victims (median 8:1 ratio). Variation in killing rates was unrelated to measures of human impacts. Our results are compatible with previously proposed adaptive explanations for killing by chimpanzees, whereas the human impact hypothesis is not supported.

Chimpanzees' technical reasoning: Taking fieldwork and ontogeny seriously.

Following the tradition of comparing humans with chimpanzees placed under unfavorable conditions, the authors suggest many uniquely human technological abilities. However, chimpanzees use spontaneously tools in nature to achieve many different goals demonstrating technological skills and reasoning contradicting the authors contrast. Chimpanzees and humans develop skills through the experiences faced during their upbringing and neglecting this leads to fake conclusions.

Sun, age and test location affect spatial orientation in human foragers in rainforests.

The ability to know the direction of food sources is important for the foraging success of hunter-gatherers, especially in rainforests where dense vegetation limits visual detection distances. Besides sex and age, prior experience with the environment and the use of environmental cues are known to influence orientation abilities of humans. Among environmental cues, the position of the sun in the sky is important for orientation of diurnal animal species. However, whether or to what extent humans use the sun is largely unknown. Here, we investigated orientation abilities of the Mbendjele BaYaka people in the Republic of Congo, by conducting pointing tests (Nparticipants = 54, age: 6-76 years) in different locations in the rainforest. The Mbendjele were overall highly accurate at pointing to out-of-sight targets (median error: 6°). Pointing accuracy increased with age, but sex did not affect accuracy. Crucially, sun visibility increased pointing accuracy in young participants, especially when they were far from the camp. However, this effect became less apparent in older participants who exhibited high pointing accuracy, also when the sun was not visible. This study extends our understandings of orientation abilities of human foragers and provides the first behavioural evidence for sun compass use in humans.

Maternal influence on the development of nut-cracking skills in the chimpanzees of the Taï forest, Côte d'Ivoire (Pan troglodytes verus).

Chimpanzees' (Pan troglodytes) nut-cracking behavior represents one of the most complex forms of tool-use known among nonhuman animals. Given the close phylogenetic relationship between these apes and humans, investigating how such complex behavior develops in immatures can reveal the evolutionary roots of the cognitive processes that enabled the evolution of outstanding technological skills in our lineage. In this study, we investigated whether maternal behavior directly enhanced nut-cracking skills in immature individuals. We analyzed the behavior of 11 immatures and their mothers (N = 8) during nut-cracking activity, spanning over three consecutive nut-cracking seasons in the Taï National Park, Côte d'Ivoire. We used generalized linear mixed models to (a) obtain values of maternal scaffolding (defined as provision of learning opportunities) and active nut-sharing behavior of each mother according to the age of their offspring, and their average nut-cracking efficiency; (b) to test whether these variables enhanced immatures' nut-cracking skills; and (c) to test whether immatures' features (age, sex, and begging behavior) influenced maternal behavior as observed in our videos. Although the predicted values of maternal scaffolding and active nut-sharing did not obviously affect immatures' skills, they were positively influenced by the average maternal efficiency and by sharing hammers with their mothers. In addition, our observations showed that mothers were more likely to share nuts with their sons than with their daughters, and the more their offspring begged. Concurrently, male immatures were also found to beg more often than females. Our results add evidence on the ontogenetic pathway leading to the full acquisition of nut-cracking in wild chimpanzees and on the effect that maternal behavior can have in promoting the acquisition of this complex tool-use behavior. Moreover, our study strengthens the importance of naturalistic observations to understand complex skill acquisition. Finally, we suggest future avenues for investigating the maternal influence on learning.

Validating camera trap distance sampling for chimpanzees.

The extension of distance sampling methods to accommodate observations from camera traps has recently enhanced the potential to remotely monitor multiple species without the need of additional data collection (sign production and decay rates) or individual identification. However, the method requires that the proportion of time is quantifiable when animals can be detected by the cameras. This can be problematic, for instance, when animals spend time above the ground, which is the case for most primates. In this study, we aimed to validate camera trap distance sampling (CTDS) for the semiarboreal western chimpanzee (Pan troglodytes verus) in Taï National Park, Côte d'Ivoire by estimating abundance of a population of known size and comparing estimates to those from other commonly applied methods. We estimated chimpanzee abundance using CTDS and accounted for limited availability for detection (semiarboreal). We evaluated bias and precision of estimates, as well as costs and efforts required to obtain them, and compared them to those from spatially explicit capture-recapture (SECR) and line transect nest surveys. Abundance estimates obtained by CTDS and SECR produced a similar negligible bias, but CTDS yielded a larger coefficient of variation (CV = 39.70% for CTDS vs. 1%/19% for SECR). Line transects generated the most biased abundance estimates but yielded a better coefficient of variation (27.40-27.85%) than CTDS. Camera trap surveys were twice more costly than line transects because of the initial cost of cameras, while line transects surveys required more than twice as much time in the field. This study demonstrates the potential to obtain unbiased estimates of the abundance of semiarboreal species like chimpanzees by CTDS. HIGHLIGHTS: Camera trap distance sampling produced accurate density estimates for semiarboreal chimpanzees. Availability for detection must be accounted for and can be derived from the activity pattern.

Towards systematic and evidence-based conservation planning for western chimpanzees.

As animal populations continue to decline, frequently driven by large-scale land-use change, there is a critical need for improved environmental planning. While data-driven spatial planning is widely applied in conservation, as of yet it is rarely used for primates. The western chimpanzee (Pan troglodytes verus) declined by 80% within 24 years and was uplisted to Critically Endangered by the IUCN Red List of Threatened Species in 2016. To support conservation planning for western chimpanzees, we systematically identified geographic areas important for this taxon. We based our analysis on a previously published data set of modeled density distribution and on several scenarios that accounted for different spatial scales and conservation targets. Across all scenarios, typically less than one-third of areas we identified as important are currently designated as high-level protected areas (i.e., national park or IUCN category I or II). For example, in the scenario for protecting 50% of all chimpanzees remaining in West Africa (i.e., approximately 26,500 chimpanzees), an area of approximately 60,000 km2 was selected (i.e., approximately 12% of the geographic range), only 24% of which is currently designated as protected areas. The derived maps can be used to inform the geographic prioritization of conservation interventions, including protected area expansion, "no-go-zones" for industry and infrastructure, and conservation sites outside the protected area network. Environmental guidelines by major institutions funding infrastructure and resource extraction projects explicitly require corporations to minimize the negative impact on great apes. Therefore, our results can inform avoidance and mitigation measures during the planning phases of such projects. This study was designed to inform future stakeholder consultation processes that could ultimately integrate the conservation of western chimpanzees with national land-use priorities. Our approach may help in promoting similar work for other primate taxa to inform systematic conservation planning in times of growing threats.

Bili-Uéré: A Chimpanzee Behavioural Realm in Northern Democratic Republic of Congo.

To improve our understanding of the evolutionary origins of culture and technology in humans, it is vital that we document the full extent of behavioural diversity in our great ape relatives. About half of the world's remaining chimpanzees (Pan spp.) live in the Democratic Republic of Congo (DRC), yet until now we have known almost nothing about their behaviour. Here we describe the insect-related tool technology of Bili-Uéré chimpanzees (Pan troglodytes schweinfurthii) inhabiting an area of at least a 50,000-km2 area in northern DRC, as well as their percussive technology associated with food processing. Over a 12-year period, we documented chimpanzee tools and artefacts at 20 survey areas and gathered data on dung, feeding remains and sleeping nests. We describe a new chimpanzee tool kit: long probes used to harvest epigaeic driver ants (Dorylus spp.), short probes used to extract ponerine ants and the arboreal nests of stingless bees, wands to dip for D. kohli and stout digging sticks used to access underground meliponine bee nests. Epigaeic Dorylus tools were significantly longer than the other tool types, and D. kohli tools were significantly thinner. Tools classified as terrestrial honey-digging sticks were a significant predictor for brushed and blunted tool ends, consistent with their presumed use. We describe two potential new tool types, an "ant scoop" and a "fruit hammer." We document an extensive percussive technology used to process termite mounds of Cubitermes sp. and Thoracotermes macrothorax and hard-shelled fruits such as Strychnos, along with evidence of the pounding open of African giant snails and tortoises. We encountered some geographic variation in behaviour: we found honey-digging tools, long driver ant probes and fruit-pounding sites only to the north of the Uele River; there were more epigaeic Dorylus tools to the north and more ponerine ant tools to the south. We found no evidence of termite-fishing, despite the availability of Macrotermes muelleri mounds throughout the region. This lack of evidence is consistent with the results of dung washes, which revealed a substantial proportion of driver ants, but no evidence of Macrotermes or other termites. Our results allow us to describe a new chimpanzee behavioural complex, characterised by a general similarity of multiple behaviours across a large, ecologically diverse region but with subtle differences in prey choice and techniques. We propose that this widespread and related suite of behaviours be referred to as the Bili-Uéré Chimpanzee Behavioural Realm. Possible explanations for this pattern are a recent chimpanzee expansion across the region and the interconnectedness of this population across at least the entirety of northern DRC.

Do chimpanzees anticipate an object's weight? A field experiment on the kinematics of hammer-lifting movements in the nut-cracking Taï chimpanzees.

When humans are about to manipulate an object, our brains use visual cues to recall an internal representation to predict its weight and scale the lifting force accordingly. Such a long-term force profile, formed through repeated experiences with similar objects, has been proposed to improve manipulative performance. Skillful object manipulation is crucial for many animals, particularly those that rely on tools for foraging. However, despite enduring interest in tool use in non-human animals, there has been very little investigation of their ability to form an expectation about an object's weight. In this study, we tested whether wild chimpanzees use long-term force profiles to anticipate the weight of a nut-cracking hammer from its size. To this end, we conducted a field experiment presenting chimpanzees with natural wooden hammers and artificially hollowed, lighter hammers of the same size and external appearance. We used calibrated videos from camera traps to extract kinematic parameters of lifting movements. We found that, when lacking previous experience, chimpanzees lifted hollowed hammers with a higher acceleration than natural hammers (overshoot effect). After using a hammer to crack open one nut, chimpanzees tuned down the lifting acceleration for the hollowed hammers, but continued lifting natural hammers with the same acceleration. Our results show that chimpanzees anticipate the weight of an object using long-term force profiles and suggest that, similarly to humans, they use internal representations of weight to plan their lifting movements.

Social and ecological correlates of space use patterns in Bwindi mountain gorillas.

Space use patterns determine access to resources necessary for survival and reproduction. Although it is recognized that the interplay between social and ecological variables shapes spacing patterns, few studies in group-living animals have simultaneously assessed their importance in a comprehensive approach using different spatiotemporal space use measures. In territorial species, such patterns are strongly determined by between-group competition, but its impact in non-territorial species is poorly understood. To better understand the role of social and ecological variables in non-territorial mountain gorillas (Gorilla beringei beringei), we simultaneously evaluated the impact of between-group competition (local gorilla population density and frequency of intergroup encounters) and within-group competition (group size) on space use patterns in 13 gorilla groups in Bwindi Impenetrable National Park, Uganda, while also examining variation in food availability (herbaceous food availability and level of frugivory). We found evidence of between-group competition, indicated by a decline of both monthly home range size and frequency of revisits to each part of the home range as the local gorilla population density increased and by an increase in daily travel distance on days when intergroup encounters occurred. Within-group feeding competition was inferred by a decrease in the frequency of revisits as group size increased. Lastly, food availability influenced the gorillas' spacing patterns, as indicated by a decline in monthly home range size as herbaceous food availability increased and by an increase in daily travel distance as the degree of frugivory increased. In sum, our results suggest that Bwindi gorillas adapted their space use according to the constraints of intraspecific competition and the availability of food resources. We provide some of the first evidence of between-group competition influencing spacing patterns in a non-territorial species. This study suggests a gradient between territoriality and non-territoriality, along which the level of between-group competition varies.

Long-term group membership and dynamics in a wild western lowland gorilla population (Gorilla gorilla gorilla) inferred using non-invasive genetics.

The social organization of a group-living animal is defined by a balance between group dynamic events such as group formation, group dissolution, and dispersal events and group stability in membership and over time. Understanding these processes, which are relevant for questions ranging from disease transmission patterns to the evolution of polygyny, requires long-term monitoring of multiple social units over time. Because all great ape species are long-lived and elusive, the number of studies on these key aspects of social organization are limited, especially for western lowland gorillas (Gorilla gorilla gorilla). In this study, we used non-invasive genetic samples collected within an approximately 100 km2 area of Loango National Park, Gabon to reconstruct group compositions and changes in composition over more than a decade. We identified 98 gorillas and 11 mixed sex groups sampled during 2014-2017. Using published data from 85 individuals and 12 groups surveyed between 2005 and 2009 at the same locality, we tracked groups and individuals back in time. The identification of 11 silverbacks via parentage analyses and the genetic tracking of 39 individuals across studies allowed us to infer six group formations, five group dissolutions, and 40 dispersal events within 12 years. We also observed four groups persisting across the sampling periods with a maximum inferred existence of nearly 17 years and exhibiting variation in membership stability. Our results highlight the variation in composition and stability among groups of western lowland gorillas and illustrate the power of non-invasive genetic sampling for long-term monitoring.

An assessment of the efficacy of camera traps for studying demographic composition and variation in chimpanzees (Pan troglodytes).

Demographic factors can strongly influence patterns of behavioral variation in animal societies. Traditionally, these factors are measured using longitudinal observation of habituated social groups, particularly in social animals like primates. Alternatively, noninvasive biomonitoring methods such as camera trapping can allow researchers to assess species occupancy, estimate population abundance, and study rare behaviors. However, measures of fine-scale demographic variation, such as those related to age and sex structure or subgrouping patterns, pose a greater challenge. Here, we compare demographic data collected from a community of habituated chimpanzees (Pan troglodytes verus) in the Taï Forest using two methods: camera trap videos and observational data from long-term records. By matching data on party size, seasonal variation in party size, measures of demographic composition, and changes over the study period from both sources, we compared the accuracy of camera trap records and long-term data to assess whether camera trap data could be used to assess such variables in populations of unhabituated chimpanzees. When compared to observational data, camera trap data tended to underestimate measures of party size, but revealed similar patterns of seasonal variation as well as similar community demographic composition (age/sex proportions) and dynamics (particularly emigration and deaths) during the study period. Our findings highlight the potential and limitations of camera trap surveys for estimating fine-scale demographic composition and variation in primates. Continuing development of field and statistical methods will further improve the usability of camera traps for demographic studies.

Origin of the HIV-1 group O epidemic in western lowland gorillas.

HIV-1, the cause of AIDS, is composed of four phylogenetic lineages, groups M, N, O, and P, each of which resulted from an independent cross-species transmission event of simian immunodeficiency viruses (SIVs) infecting African apes. Although groups M and N have been traced to geographically distinct chimpanzee communities in southern Cameroon, the reservoirs of groups O and P remain unknown. Here, we screened fecal samples from western lowland (n = 2,611), eastern lowland (n = 103), and mountain (n = 218) gorillas for gorilla SIV (SIVgor) antibodies and nucleic acids. Despite testing wild troops throughout southern Cameroon (n = 14), northern Gabon (n = 16), the Democratic Republic of Congo (n = 2), and Uganda (n = 1), SIVgor was identified at only four sites in southern Cameroon, with prevalences ranging from 0.8-22%. Amplification of partial and full-length SIVgor sequences revealed extensive genetic diversity, but all SIVgor strains were derived from a single lineage within the chimpanzee SIV (SIVcpz) radiation. Two fully sequenced gorilla viruses from southwestern Cameroon were very closely related to, and likely represent the source population of, HIV-1 group P. Most of the genome of a third SIVgor strain, from central Cameroon, was very closely related to HIV-1 group O, again pointing to gorillas as the immediate source. Functional analyses identified the cytidine deaminase APOBEC3G as a barrier for chimpanzee-to-gorilla, but not gorilla-to-human, virus transmission. These data indicate that HIV-1 group O, which spreads epidemically in west central Africa and is estimated to have infected around 100,000 people, originated by cross-species transmission from western lowland gorillas.

Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes.

UNLABELLED: It has long been hypothesized that polyomaviruses (PyV; family Polyomaviridae) codiverged with their animal hosts. In contrast, recent analyses suggested that codivergence may only marginally influence the evolution of PyV. We reassess this question by focusing on a single lineage of PyV infecting hominine hosts, the Merkel cell polyomavirus (MCPyV) lineage. By characterizing the genetic diversity of these viruses in seven African great ape taxa, we show that they exhibit very strong host specificity. Reconciliation analyses identify more codivergence than noncodivergence events. In addition, we find that a number of host and PyV divergence events are synchronous. Collectively, our results support codivergence as the dominant process at play during the evolution of the MCPyV lineage. More generally, our results add to the growing body of evidence suggesting an ancient and stable association of PyV and their animal hosts. IMPORTANCE: The processes involved in viral evolution and the interaction of viruses with their hosts are of great scientific interest and public health relevance. It has long been thought that the genetic diversity of double-stranded DNA viruses was generated over long periods of time, similar to typical host evolutionary timescales. This was also hypothesized for polyomaviruses (family Polyomaviridae), a group comprising several human pathogens, but this remains a point of controversy. Here, we investigate this question by focusing on a single lineage of polyomaviruses that infect both humans and their closest relatives, the African great apes. We show that these viruses exhibit considerable host specificity and that their evolution largely mirrors that of their hosts, suggesting that codivergence with their hosts played a major role in their diversification. Our results provide statistical evidence in favor of an association of polyomaviruses and their hosts over millions of years.