Search details
1.
Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis.
Brief Bioinform
; 23(2)2022 03 10.
Article
in English
| MEDLINE | ID: mdl-35134107
2.
HDAC1 and PRC2 mediate combinatorial control in SPI1/PU.1-dependent gene repression in murine erythroleukaemia.
Nucleic Acids Res
; 50(14): 7938-7958, 2022 08 12.
Article
in English
| MEDLINE | ID: mdl-35871293
3.
Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome.
Mol Cell
; 53(2): 301-16, 2014 Jan 23.
Article
in English
| MEDLINE | ID: mdl-24462204
4.
CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes.
BMC Bioinformatics
; 22(1): 407, 2021 Aug 17.
Article
in English
| MEDLINE | ID: mdl-34404353
5.
FUN-LDA: A Latent Dirichlet Allocation Model for Predicting Tissue-Specific Functional Effects of Noncoding Variation: Methods and Applications.
Am J Hum Genet
; 102(5): 920-942, 2018 05 03.
Article
in English
| MEDLINE | ID: mdl-29727691
6.
Steroidogenic differentiation and PKA signaling are programmed by histone methyltransferase EZH2 in the adrenal cortex.
Proc Natl Acad Sci U S A
; 115(52): E12265-E12274, 2018 12 26.
Article
in English
| MEDLINE | ID: mdl-30541888
7.
Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes.
Genome Res
; 27(2): 259-268, 2017 02.
Article
in English
| MEDLINE | ID: mdl-27965291
8.
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.
Bioinformatics
; 34(11): 1808-1816, 2018 06 01.
Article
in English
| MEDLINE | ID: mdl-29342233
9.
HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics.
Nucleic Acids Res
; 45(8): e58, 2017 05 05.
Article
in English
| MEDLINE | ID: mdl-28053124
10.
RNF: a general framework to evaluate NGS read mappers.
Bioinformatics
; 32(1): 136-9, 2016 Jan 01.
Article
in English
| MEDLINE | ID: mdl-26353839
11.
SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Bioinformatics
; 32(7): 984-92, 2016 04 01.
Article
in English
| MEDLINE | ID: mdl-26740523
12.
Changes in correlation between promoter methylation and gene expression in cancer.
BMC Genomics
; 16: 873, 2015 Oct 28.
Article
in English
| MEDLINE | ID: mdl-26510534
13.
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.
Bioinformatics
; 30(24): 3443-50, 2014 Dec 15.
Article
in English
| MEDLINE | ID: mdl-25016581
14.
SegAnnDB: interactive Web-based genomic segmentation.
Bioinformatics
; 30(11): 1539-46, 2014 Jun 01.
Article
in English
| MEDLINE | ID: mdl-24493034
15.
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.
Bioinformatics
; 29(23): 2979-86, 2013 Dec 01.
Article
in English
| MEDLINE | ID: mdl-24021381
16.
Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia.
Nucleic Acids Res
; 40(18): 8927-41, 2012 Oct.
Article
in English
| MEDLINE | ID: mdl-22790984
17.
DNA-methylation variability in normal mucosa: a field cancerization marker in patients with adenomatous polyps.
J Natl Cancer Inst
; 116(6): 974-982, 2024 Jun 07.
Article
in English
| MEDLINE | ID: mdl-38273663
18.
Learning smoothing models of copy number profiles using breakpoint annotations.
BMC Bioinformatics
; 14: 164, 2013 May 22.
Article
in English
| MEDLINE | ID: mdl-23697330
19.
Nebula--a web-server for advanced ChIP-seq data analysis.
Bioinformatics
; 28(19): 2517-9, 2012 Oct 01.
Article
in English
| MEDLINE | ID: mdl-22829625
20.
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.
Bioinformatics
; 28(3): 423-5, 2012 Feb 01.
Article
in English
| MEDLINE | ID: mdl-22155870