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1.
J Bacteriol ; 202(11)2020 05 11.
Article in English | MEDLINE | ID: mdl-32179627

ABSTRACT

Listeria monocytogenes is a Gram-positive pathogen able to cause severe human infections. Its major virulence regulator is the transcriptional activator PrfA, a member of the Crp/Fnr family of transcriptional regulators. To establish a successful L. monocytogenes infection, the PrfA protein needs to be in an active conformation, either by binding the cognate inducer glutathione (GSH) or by possessing amino acid substitutions rendering the protein constitutively active (PrfA*). By a yet unknown mechanism, phosphotransferase system (PTS) sugars repress the activity of PrfA. We therefore took a transposon-based approach to identify the mechanism by which PTS sugars repress PrfA activity. For this, we screened a transposon mutant bank to identify clones able to grow in the presence of glucose-6-phosphate as the sole carbon source. Surprisingly, most of the isolated transposon mutants also carried amino acid substitutions in PrfA. In transposon-free strains, the PrfA amino acid substitution mutants displayed growth, virulence factor expression, infectivity, and DNA binding, agreeing with previously identified PrfA* mutants. Hence, the initial growth phenotype observed in the isolated clone was due to the amino acid substitution in PrfA and unrelated to the loci inactivated by the transposon mutant. Finally, we provide structural evidence for the existence of an intermediately activated PrfA state, which gives new insights into PrfA protein activation.IMPORTANCE The Gram-positive bacterium Listeria monocytogenes is a human pathogen affecting mainly the elderly, immunocompromised people, and pregnant women. It can lead to meningoencephalitis, septicemia, and abortion. The major virulence regulator in L. monocytogenes is the PrfA protein, a transcriptional activator. Using a growth-based selection strategy, we identified mutations in the PrfA protein leading to constitutively active virulence factor expression. We provide structural evidence for the existence of an intermediately activated PrfA state, which gives new insights into PrfA protein activation.


Subject(s)
Bacterial Proteins/metabolism , Listeria monocytogenes/growth & development , Listeria monocytogenes/genetics , Listeria monocytogenes/metabolism , Listeria monocytogenes/pathogenicity , Listeriosis/microbiology , Peptide Termination Factors/metabolism , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Humans , Mutation , Peptide Termination Factors/genetics , Virulence
2.
J Am Chem Soc ; 142(6): 2876-2888, 2020 02 12.
Article in English | MEDLINE | ID: mdl-31990532

ABSTRACT

The signal transducer and activator of transcription 3 (STAT3) protein is a master regulator of most key hallmarks and enablers of cancer, including cell proliferation and the response to DNA damage. G-Quadruplex (G4) structures are four-stranded noncanonical DNA structures enriched at telomeres and oncogenes' promoters. In cancer cells, stabilization of G4 DNAs leads to replication stress and DNA damage accumulation and is therefore considered a promising target for oncotherapy. Here, we designed and synthesized novel quinazoline-based compounds that simultaneously and selectively affect these two well-recognized cancer targets, G4 DNA structures and the STAT3 protein. Using a combination of in vitro assays, NMR, and molecular dynamics simulations, we show that these small, uncharged compounds not only bind to the STAT3 protein but also stabilize G4 structures. In human cultured cells, the compounds inhibit phosphorylation-dependent activation of STAT3 without affecting the antiapoptotic factor STAT1 and cause increased formation of G4 structures, as revealed by the use of a G4 DNA-specific antibody. As a result, treated cells show slower DNA replication, DNA damage checkpoint activation, and an increased apoptotic rate. Importantly, cancer cells are more sensitive to these molecules compared to noncancerous cell lines. This is the first report of a promising class of compounds that not only targets the DNA damage cancer response machinery but also simultaneously inhibits the STAT3-induced cancer cell proliferation, demonstrating a novel approach in cancer therapy.


Subject(s)
G-Quadruplexes , Neoplasms/pathology , Quinazolines/chemistry , STAT3 Transcription Factor/metabolism , Cell Death , Humans , Ligands , Neoplasms/metabolism
3.
J Org Chem ; 84(7): 3887-3903, 2019 04 05.
Article in English | MEDLINE | ID: mdl-30862161

ABSTRACT

We here describe the use of three-component reactions to synthesize tricyclic pyridine ring-fused 2-pyridones. The developed protocols have a wide substrate scope and allow for the installation of diverse chemical functionalities on the tricyclic central fragment. Several of these pyridine-fused rigid polyheterocycles are shown to bind to Aß and α-synuclein fibrils, which are associated with neurodegenerative diseases.


Subject(s)
Amyloid/chemistry , Heterocyclic Compounds, Bridged-Ring/chemical synthesis , Pyridines/chemical synthesis , Pyridones/chemical synthesis , Bridged Bicyclo Compounds, Heterocyclic , Heterocyclic Compounds, Bridged-Ring/chemistry , Pyridines/chemistry , Pyridones/chemistry , Structure-Activity Relationship , Styrenes/chemistry
4.
Environ Sci Technol ; 52(20): 11865-11874, 2018 10 16.
Article in English | MEDLINE | ID: mdl-30226982

ABSTRACT

Thyroid-disrupting chemicals (TDCs) are xenobiotics that can interfere with the endocrine system and cause adverse effects in organisms and their offspring. TDCs affect both the thyroid gland and regulatory enzymes associated with thyroid hormone homeostasis. Transthyretin (TTR) is found in the serum and cerebrospinal fluid of vertebrates, where it transports thyroid hormones. Here, we explored the interspecies variation in TDC binding to human and fish TTR (exemplified by Gilthead seabream ( Sparus aurata)). The in vitro binding experiments showed that TDCs bind with equal or weaker affinity to seabream TTR than to the human TTR, in particular, the polar TDCs (>500-fold lower affinity). Crystal structures of the seabream TTR-TDC complexes revealed that all TDCs bound at the thyroid binding sites. However, amino acid substitution of Ser117 in human TTR to Thr117 in seabream prevented polar TDCs from binding deep in the hormone binding cavity, which explains their low affinity to seabream TTR. Molecular dynamics and in silico alanine scanning simulation also suggested that the protein backbone of seabream TTR is more rigid than the human one and that Thr117 provides fewer electrostatic contributions than Ser117 to ligand binding. This provides an explanation for the weaker affinities of the ligands that rely on electrostatic interactions with Thr117. The lower affinities of TDCs to fish TTR, in particular the polar ones, could potentially lead to milder thyroid-related effects in fish.


Subject(s)
Sea Bream , Thyroid Gland , Animals , Endocrine System , Humans , Prealbumin , Thyroid Hormones
5.
J Biol Chem ; 290(28): 17339-48, 2015 Jul 10.
Article in English | MEDLINE | ID: mdl-25971975

ABSTRACT

Ribonucleotide reductase (RNR) catalyzes the reduction of ribonucleotides to the corresponding deoxyribonucleotides, which are used as building blocks for DNA replication and repair. This process is tightly regulated via two allosteric sites, the specificity site (s-site) and the overall activity site (a-site). The a-site resides in an N-terminal ATP cone domain that binds dATP or ATP and functions as an on/off switch, whereas the composite s-site binds ATP, dATP, dTTP, or dGTP and determines which substrate to reduce. There are three classes of RNRs, and class I RNRs consist of different combinations of α and ß subunits. In eukaryotic and Escherichia coli class I RNRs, dATP inhibits enzyme activity through the formation of inactive α6 and α4ß4 complexes, respectively. Here we show that the Pseudomonas aeruginosa class I RNR has a duplicated ATP cone domain and represents a third mechanism of overall activity regulation. Each α polypeptide binds three dATP molecules, and the N-terminal ATP cone is critical for binding two of the dATPs because a truncated protein lacking this cone could only bind dATP to its s-site. ATP activates the enzyme solely by preventing dATP from binding. The dATP-induced inactive form is an α4 complex, which can interact with ß2 to form a non-productive α4ß2 complex. Other allosteric effectors induce a mixture of α2 and α4 forms, with the former being able to interact with ß2 to form active α2ß2 complexes. The unique features of the P. aeruginosa RNR are interesting both from evolutionary and drug discovery perspectives.


Subject(s)
Bacterial Proteins/metabolism , Pseudomonas aeruginosa/enzymology , Ribonucleotide Reductases/metabolism , Adenosine Triphosphate/metabolism , Allosteric Regulation , Allosteric Site , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Deoxyadenine Nucleotides/metabolism , Electrophoretic Mobility Shift Assay , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Kinetics , Molecular Sequence Data , Protein Structure, Quaternary , Protein Subunits , Pseudomonas aeruginosa/genetics , Ribonucleotide Reductases/chemistry , Ribonucleotide Reductases/genetics , Sequence Deletion
6.
PLoS Pathog ; 10(7): e1004234, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24991812

ABSTRACT

During persistent infection, optimal expression of bacterial factors is required to match the ever-changing host environment. The gastric pathogen Helicobacter pylori has a large set of simple sequence repeats (SSR), which constitute contingency loci. Through a slipped strand mispairing mechanism, the SSRs generate heterogeneous populations that facilitate adaptation. Here, we present a model that explains, in molecular terms, how an intergenically located T-tract, via slipped strand mispairing, operates with a rheostat-like function, to fine-tune activity of the promoter that drives expression of the sialic acid binding adhesin, SabA. Using T-tract variants, in an isogenic strain background, we show that the length of the T-tract generates multiphasic output from the sabA promoter. Consequently, this alters the H. pylori binding to sialyl-Lewis x receptors on gastric mucosa. Fragment length analysis of post-infection isolated clones shows that the T-tract length is a highly variable feature in H. pylori. This mirrors the host-pathogen interplay, where the bacterium generates a set of clones from which the best-fit phenotypes are selected in the host. In silico and functional in vitro analyzes revealed that the length of the T-tract affects the local DNA structure and thereby binding of the RNA polymerase, through shifting of the axial alignment between the core promoter and UP-like elements. We identified additional genes in H. pylori, with T- or A-tracts positioned similar to that of sabA, and show that variations in the tract length likewise acted as rheostats to modulate cognate promoter output. Thus, we propose that this generally applicable mechanism, mediated by promoter-proximal SSRs, provides an alternative mechanism for transcriptional regulation in bacteria, such as H. pylori, which possesses a limited repertoire of classical trans-acting regulatory factors.


Subject(s)
Adhesins, Bacterial/biosynthesis , DNA, Bacterial/metabolism , Gene Expression Regulation, Bacterial/physiology , Helicobacter pylori/physiology , Repetitive Sequences, Nucleic Acid/physiology , Transcriptional Activation/physiology
7.
Environ Sci Technol ; 50(21): 11984-11993, 2016 11 01.
Article in English | MEDLINE | ID: mdl-27668830

ABSTRACT

Thyroid disruption by xenobiotics is associated with a broad spectrum of severe adverse outcomes. One possible molecular target of thyroid hormone disrupting chemicals (THDCs) is transthyretin (TTR), a thyroid hormone transporter in vertebrates. To better understand the interactions between TTR and THDCs, we determined the crystallographic structures of human TTR in complex with perfluorooctanesulfonic acid (PFOS), perfluorooctanoic acid (PFOA), and 2,2',4,4'-tetrahydroxybenzophenone (BP2). The molecular interactions between the ligands and TTR were further characterized using molecular dynamics simulations. A structure-based virtual screening (VS) protocol was developed with the intention of providing an efficient tool for the discovery of novel TTR-binders from the Tox21 inventory. Among the 192 predicted binders, 12 representatives were selected, and their TTR binding affinities were studied with isothermal titration calorimetry, of which seven compounds had binding affinities between 0.26 and 100 µM. To elucidate structural details in their binding to TTR, crystal structures were determined of TTR in complex with four of the identified compounds including 2,6-dinitro-p-cresol, bisphenol S, clonixin, and triclopyr. The compounds were found to bind in the TTR hormone binding sites as predicted. Our results show that the developed VS protocol is able to successfully identify potential THDCs, and we suggest that it can be used to propose THDCs for future toxicological evaluations.


Subject(s)
Prealbumin/metabolism , Thyroid Gland/metabolism , Animals , Binding Sites , Computer Simulation , Humans , Thyroid Hormones/metabolism
8.
Biochem J ; 468(3): 385-400, 2015 Jun 15.
Article in English | MEDLINE | ID: mdl-25877331

ABSTRACT

The eukaryotic mediator integrates regulatory signals from promoter-bound transcription factors (TFs) and transmits them to RNA polymerase II (Pol II) machinery. Although redox signalling is important in adjusting plant metabolism and development, nothing is known about a possible redox regulation of mediator. In the present study, using pull-down and yeast two-hybrid assays, we demonstrate the association of mediator (MED) subunits MED10a, MED28 and MED32 with the GLABROUS1 (GL1) enhancer-binding protein-like (GeBPL), a plant-specific TF that binds a promoter containing cryptochrome 1 response element 2 (CryR2) element. All the corresponding recombinant proteins form various types of covalent oligomers linked by intermolecular disulfide bonds that are reduced in vitro by the thioredoxin (TRX) and/or glutathione/glutaredoxin (GRX) systems. The presence of recombinant MED10a, MED28 and MED32 subunits or changes of its redox state affect the DNA-binding capacity of GeBPL suggesting that redox-driven conformational changes might modulate its activity. Overall, these results advance our understanding of how redox signalling affects transcription and identify mediator as a novel actor in redox signalling pathways, relaying or integrating redox changes in combination with specific TFs as GeBPL.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , DNA-Binding Proteins/metabolism , Mediator Complex/metabolism , Protein Subunits/metabolism , Arabidopsis Proteins/genetics , DNA-Binding Proteins/genetics , Glutaredoxins/metabolism , Glutathione/metabolism , Mediator Complex/genetics , Mutagenesis, Site-Directed , Mutation , Oxidation-Reduction , Promoter Regions, Genetic , Protein Subunits/genetics , Recombinant Proteins/metabolism , Response Elements , Thioredoxins/metabolism , Transcription Factors , Two-Hybrid System Techniques
9.
J Am Chem Soc ; 136(31): 10956-64, 2014 Aug 06.
Article in English | MEDLINE | ID: mdl-25014209

ABSTRACT

Alzheimer's disease is linked to a pathological polymerization of the endogenous amyloid ß-peptide (Aß) that ultimately forms amyloid plaques within the human brain. We used surface plasmon resonance (SPR) to measure the kinetic properties of Aß fibril formation under different conditions during the polymerization process. For all polymerization processes, a critical concentration of free monomers, as defined by the dissociation equilibrium constant (K(D)), is required for the buildup of the polymer, for example, amyloid fibrils. At concentrations below the K(D), polymerization cannot occur. However, the K(D) for Aß has previously been shown to be several orders of magnitude higher than the concentrations found in the cerebrospinal and interstitial fluids of the human brain, and the mechanism by which Aß amyloid forms in vivo has been a matter of debate. Using SPR, we found that the K(D) of Aß dramatically decreases as a result of lowering the pH. Importantly, this effect enables Aß to polymerize within a picomolar concentration range that is close to the physiological Aß concentration within the human brain. The stabilizing effect is dynamic, fully reversible, and notably pronounced within the pH range found within the endosomal and lysosomal pathways. Through sequential truncation, we show that the N-terminal region of Aß contributes to the enhanced fibrillar stability due to a gain of function mechanism at low pH. Our results present a possible route for amyloid formation at very low Aß concentrations and raise the question of whether amyloid formation in vivo is restricted to a low pH environment. These results have general implications for the development of therapeutic interventions.


Subject(s)
Amyloid beta-Peptides/chemistry , Peptide Fragments/chemistry , Protein Aggregates , Protein Multimerization , Hydrogen-Ion Concentration , Kinetics , Protein Stability , Protein Structure, Secondary
10.
Biochem J ; 450(1): 189-97, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23171033

ABSTRACT

Identifying factors that affect the self-assembly of Aß (amyloid-ß peptide) is of utmost importance in the quest to understand the molecular mechanisms causing AD (Alzheimer's disease). Ca(2+) has previously been shown to accelerate both Aß fibril nucleation and maturation, and dysregulated Ca(2+) homoeostasis frequently correlates with development of AD. The mechanisms regarding Ca(2+) binding, as well as its effect on fibril kinetics, are not fully understood. Using a polymerization assay we show that Ca(2+) in a dynamic and reversible manner enhances both the elongation rate and fibrillar stability, where specifically the 'dock and lock' phase mechanism is enhanced. Through NMR analysis we found that Ca(2+) affects the fibrillar architecture. In addition, and unexpectedly, we found that Ca(2+) does not bind the free Aß monomer. This implies that Ca(2+) binding requires an architecture adopted by assembled peptides, and consequently is mediated through intermolecular interactions between adjacent peptides. This gives a mechanistic explanation to the enhancing effect on fibril maturation and indicates structural similarities between prefibrillar structures and mature amyloid. Taken together we show how Ca(2+) levels affect the delicate equilibrium between the monomeric and assembled Aß and how fluctuations in vivo may contribute to development and progression of the disease.


Subject(s)
Amyloid beta-Peptides/chemistry , Calcium/chemistry , Peptide Fragments/chemistry , Alzheimer Disease/metabolism , Calcium/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Microscopy, Atomic Force , Peptide Fragments/metabolism , Polymerization , Protein Binding , Protein Conformation
11.
Nucleic Acids Res ; 40(13): 5938-50, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22447446

ABSTRACT

Mediator is a multiprotein coregulatory complex that conveys signals from DNA-bound transcriptional regulators to the RNA polymerase II transcription machinery in eukaryotes. The molecular mechanisms for how these signals are transmitted are still elusive. By using purified transcription factor Dreb2a, mediator subunit Med25 from Arabidopsis thaliana, and a combination of biochemical and biophysical methods, we show that binding of Dreb2a to its canonical DNA sequence leads to an increase in secondary structure of the transcription factor. Similarly, interaction between the Dreb2a and Med25 in the absence of DNA results in conformational changes. However, the presence of the canonical Dreb2a DNA-binding site reduces the affinity between Dreb2a and Med25. We conclude that transcription regulation is facilitated by small but distinct changes in energetic and structural parameters of the involved proteins.


Subject(s)
Arabidopsis Proteins/chemistry , Nuclear Proteins/chemistry , Transcription Factors/chemistry , Amino Acid Sequence , Arabidopsis Proteins/metabolism , Binding Sites , DNA/metabolism , DNA-Binding Proteins , Humans , Mediator Complex/chemistry , Molecular Sequence Data , Nuclear Proteins/metabolism , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Transcription Factors/metabolism
12.
Proc Natl Acad Sci U S A ; 108(20): 8245-50, 2011 May 17.
Article in English | MEDLINE | ID: mdl-21536906

ABSTRACT

Development in plants is controlled by abiotic environmental cues such as day length, light quality, temperature, drought, and salinity. These signals are sensed by a variety of systems and transmitted by different signal transduction pathways. Ultimately, these pathways are integrated to control expression of specific target genes, which encode proteins that regulate development and differentiation. The molecular mechanisms for such integration have remained elusive. We here show that a linear 130-amino-acids-long sequence in the Med25 subunit of the Arabidopsis thaliana Mediator is a common target for the drought response element binding protein 2A, zinc finger homeodomain 1, and Myb-like transcription factors which are involved in different stress response pathways. In addition, our results show that Med25 together with drought response element binding protein 2A also function in repression of PhyB-mediated light signaling and thus integrate signals from different regulatory pathways.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/physiology , Environment , Gene Expression Regulation, Plant/physiology , Mediator Complex/physiology , Nuclear Proteins/physiology , Signal Transduction/physiology , Amino Acid Sequence , Arabidopsis/growth & development , Binding Sites , DNA-Binding Proteins , Protein Subunits/physiology , Stress, Physiological/genetics , Transcription Factors
13.
Biochemistry ; 52(6): 1055-61, 2013 Feb 12.
Article in English | MEDLINE | ID: mdl-23339454

ABSTRACT

Enzymatic activity is ultimately defined by the structure, chemistry, and dynamics of the Michaelis complex. A large number of experimentally determined structures between enzymes and substrates, substrate analogues, or inhibitors exist. However, transient, short-lived encounter and equilibrium structures also play fundamental roles during enzymatic reaction cycles. Such structures are inherently difficult to study with conventional experimental techniques. The enzyme adenylate kinase undergoes major conformational rearrangements in response to binding of its substrates, ATP and AMP. ATP is sandwiched between two binding surfaces in the closed and active enzyme conformation. Thus, adenylate kinase harbors two spatially distant surfaces in the substrate free open conformation, of which one is responsible for the initial interaction with ATP. Here, we have performed primarily nuclear magnetic resonance experiments on Escherichia coli adenylate kinase (AK(eco)) variants that allowed identification of the site responsible for the initial ATP interaction. This allowed a characterization of the structural topology of an initial equilibrium complex between AK(eco) and ATP. On the basis of the results, we suggest that the ATP binding mechanism for AK(eco) is a mixture between "induced fit" and "conformational selection" models. It is shown that ATP is activated in the initial enzyme-bound complex because it displays an appreciable rate of nonproductive ATP hydrolysis. In summary, our results provide novel structural and functional insights into adenylate kinase catalysis.


Subject(s)
Adenosine Triphosphate/metabolism , Adenylate Kinase/chemistry , Escherichia coli/enzymology , Adenylate Kinase/genetics , Adenylate Kinase/metabolism , Binding Sites , Catalysis , Escherichia coli/genetics , Hydrolysis , Magnetic Resonance Spectroscopy , Models, Molecular , Protein Conformation , Surface Plasmon Resonance
14.
J Biol Chem ; 287(42): 35092-35103, 2012 Oct 12.
Article in English | MEDLINE | ID: mdl-22891247

ABSTRACT

Amyloids are highly aggregated proteinaceous fibers historically associated with neurodegenerative conditions including Alzheimers, Parkinsons, and prion-based encephalopathies. Polymerization of amyloidogenic proteins into ordered fibers can be accelerated by preformed amyloid aggregates derived from the same protein in a process called seeding. Seeding of disease-associated amyloids and prions is highly specific and cross-seeding is usually limited or prevented. Here we describe the first study on the cross-seeding potential of bacterial functional amyloids. Curli are produced on the surface of many Gram-negative bacteria where they facilitate surface attachment and biofilm development. Curli fibers are composed of the major subunit CsgA and the nucleator CsgB, which templates CsgA into fibers. Our results showed that curli subunit homologs from Escherichia coli, Salmonella typhimurium LT2, and Citrobacter koseri were able to cross-seed in vitro. The polymerization of Escherichia coli CsgA was also accelerated by fibers derived from a distant homolog in Shewanella oneidensis that shares less than 30% identity in primary sequence. Cross-seeding of curli proteins was also observed in mixed colony biofilms with E. coli and S. typhimurium. CsgA was secreted from E. coli csgB- mutants assembled into fibers on adjacent S. typhimurium that presented CsgB on its surfaces. Similarly, CsgA was secreted by S. typhimurium csgB- mutants formed curli on CsgB-presenting E. coli. This interspecies curli assembly enhanced bacterial attachment to agar surfaces and supported pellicle biofilm formation. Collectively, this work suggests that the seeding specificity among curli homologs is relaxed and that heterogeneous curli fibers can facilitate multispecies biofilm development.


Subject(s)
Amyloid/metabolism , Bacterial Proteins/metabolism , Bacterial Structures/metabolism , Biofilms/growth & development , Citrobacter koseri/physiology , Escherichia coli/physiology , Salmonella typhimurium/physiology , Amyloid/genetics , Bacterial Adhesion/physiology , Bacterial Proteins/genetics , Bacterial Structures/genetics , Mutation
15.
bioRxiv ; 2023 May 24.
Article in English | MEDLINE | ID: mdl-37292721

ABSTRACT

The majority of the world population carry the gastric pathogen Helicobacter pylori. Fortunately, most individuals experience only low-grade or no symptoms, but in many cases the chronic inflammatory infection develops into severe gastric disease, including duodenal ulcer disease and gastric cancer. Here we report on a protective mechanism where H. pylori attachment and accompanying chronic mucosal inflammation can be reduced by antibodies that are present in a vast majority of H. pylori carriers. These antibodies block binding of the H. pylori attachment protein BabA by mimicking BabA's binding to the ABO blood group glycans in the gastric mucosa. However, many individuals demonstrate low titers of BabA blocking antibodies, which is associated with an increased risk for duodenal ulceration, suggesting a role for these antibodies in preventing gastric disease.

16.
Biol Chem ; 393(5): 369-77, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22505519

ABSTRACT

SPINK9, a Kazal-type serine protease inhibitor, is almost exclusively expressed in the palmo-plantar epidermis. SPINK9 selectively inhibits kallikrein-related peptidase 5 (KLK5), no other target enzyme is known at present. In this study, we defined the reactive loop to residues 48 and 49 of SPINK9 and characterized the inhibition and binding of different SPINK9 variants towards KLK5, KLK7, KLK8 and KLK14. Substitutions of single amino acids in the reactive loop had a large impact on both inhibitory efficiency and specificity. Binding studies showed that it is mainly the dissociation rate that is affected by the amino acid substitutions. The inhibitory effect of wild-type SPINK9 was clearly pH-dependent with an improved effect at a pH similar to that of the outer layers of the skin. Modeling of the enzyme-inhibitor complexes showed that the reactive loop of SPINK9 fits very well into the deep negatively charged binding pocket of KLK5. A decrease in pH protonates His48 of the wild-type protein resulting in a positively charged residue, thereby explaining the observed decreased dissociation rate. Interestingly, substitution with a positively charged amino acid at position 48 resulted in a more efficient inhibitor at higher pH.


Subject(s)
Epidermis/enzymology , Foot , Gene Expression Regulation , Hand , Kallikreins/antagonists & inhibitors , Protease Inhibitors/metabolism , Proteinase Inhibitory Proteins, Secretory/metabolism , Amino Acid Sequence , Amino Acid Substitution , Humans , Kallikreins/chemistry , Kallikreins/metabolism , Models, Molecular , Molecular Sequence Data , Protease Inhibitors/chemistry , Protein Conformation , Proteinase Inhibitory Proteins, Secretory/chemistry , Proteinase Inhibitory Proteins, Secretory/genetics , Serine Peptidase Inhibitors, Kazal Type , Substrate Specificity
17.
Org Biomol Chem ; 9(4): 1140-7, 2011 Feb 21.
Article in English | MEDLINE | ID: mdl-21152577

ABSTRACT

The multifaceted nature of Alzheimer's disease (AD) has led to the development of multi-targeted compounds based on the classical AD drug, tacrine, first known to inhibit the acetylcholine-degrading enzyme acetylcholinesterase (AChE). In the present work, we explore the potentiality of multimers of tacrine in this field. The synthesis using the so-called "click chemistry" and the in vitro study of the conjugates are described. Two or four copies of the tacrine molecule are "clicked" on a constrained cyclopeptide template proven to be a convenient tool for multimeric presentation. The multimers significantly inhibit self-induced amyloid fibril formation from Aß(40) at low inhibitor to Aß molar ratios at which the tacrine monomer is fully inactive (Thioflavin T assays and AFM observation). Moreover, they have the capacity to bind to Aß(40) fibrils (SPR assays) while retaining the AChE inhibitory activity of the parent tacrine.


Subject(s)
Acetylcholinesterase/metabolism , Amyloid beta-Peptides/antagonists & inhibitors , Cholinesterase Inhibitors/chemistry , Tacrine/chemistry , Amyloid beta-Peptides/metabolism , Amyloid beta-Peptides/ultrastructure , Cholinesterase Inhibitors/pharmacology , Inhibitory Concentration 50 , Microscopy, Atomic Force , Molecular Structure
18.
FEBS J ; 287(6): 1208-1219, 2020 03.
Article in English | MEDLINE | ID: mdl-31571352

ABSTRACT

Alzheimer's disease (AD) is strongly linked to amyloid depositions of the Aß peptide (Aß). The lipid-binding protein apolipoprotein E (ApoE) has been found to interfere with Aß amyloid formation and to exert a strong clinical impact to the pathology of AD. The APOE gene exists in three allelic isoforms represented by APOE ε2, APOE ε3, and APOE ε4. Carriers of the APOE ε4 variant display a gene dose-dependent increased risk of developing the disease. Aß amyloids are formed via a nucleation-dependent mechanism where free monomers are added onto a nucleus in a template-dependent manner. Using a combination of surface plasmon resonance and thioflavin-T assays, we here show that ApoE can target the process of fibril elongation and that its interference effectively prevents amyloid maturation. We expose a complex equilibrium where the concentration of ApoE, Aß monomers, and the amount of already formed Aß fibrils will affect the relative proportion and formation rate of mature amyloids versus alternative assemblies. The result illustrates a mechanism which may affect both the clearance rate of Aß assemblies in vivo and the population of cytotoxic Aß assemblies.


Subject(s)
Amyloid beta-Peptides/chemistry , Amyloid beta-Peptides/metabolism , Apolipoprotein E4/genetics , Apolipoprotein E4/metabolism , Alzheimer Disease/genetics , Alzheimer Disease/metabolism , Amyloid beta-Peptides/genetics , Apolipoprotein E4/chemistry , Benzothiazoles/chemistry , Fluorescent Dyes/chemistry , Humans , Particle Size , Surface Plasmon Resonance , Surface Properties
19.
Infect Immun ; 77(3): 1144-54, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19124604

ABSTRACT

The Sm16/SmSLP/SmSPO-1 (Sm16) protein is secreted by the parasite Schistosoma mansoni during skin penetration and has been ascribed immunosuppressive activities. Here we describe the strategy behind the design of a modified Sm16 protein with a decreased aggregation propensity, thus facilitating the expression and purification of an Sm16 protein that is soluble in physiological buffers. The Stokes radii and sedimentation coefficients of recombinant and native proteins indicate that Sm16 is an approximately nine-subunit oligomer. Analysis of truncated Sm16 derivatives showed that both oligomerization and binding to the plasma membrane of human cells depend on multiple C-terminal regions. For analysis of immunomodulatory activities, Sm16 was expressed in Pichia pastoris to facilitate the preparation of a pyrogen/endotoxin-free purified protein. Recombinant Sm16 was found to have no effect on T-lymphocyte activation, cell proliferation, or the basal level of cytokine production by whole human blood or monocytic cells. However, Sm16 exerts potent inhibition of the cytokine response to the Toll-like receptor (TLR) ligands lipopolysaccharide (LPS) and poly(I:C) while being less efficient at inhibiting the response to the TLR ligand peptidoglycan or a synthetic lipopeptide. Since Sm16 specifically inhibits the degradation of the IRAK1 signaling protein in LPS-stimulated monocytes, our findings indicate that inhibition is exerted proximal to the TLR complex.


Subject(s)
Helminth Proteins/biosynthesis , Helminth Proteins/immunology , Recombinant Proteins/biosynthesis , Schistosoma mansoni/immunology , Signal Transduction/immunology , Toll-Like Receptors/immunology , Animals , Cytokines/biosynthesis , Cytokines/immunology , Flow Cytometry , Helminth Proteins/chemistry , Humans , Immunoblotting , Lymphocyte Activation/immunology , Recombinant Proteins/chemistry , Recombinant Proteins/immunology , Reverse Transcriptase Polymerase Chain Reaction , T-Lymphocytes/immunology
20.
Mol Biol Cell ; 17(7): 2921-30, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16624860

ABSTRACT

Op18/stathmin (Op18) is a phosphorylation-regulated microtubule destabilizer that is frequently overexpressed in tumors. The importance of Op18 in malignancy was recently suggested by identification of a somatic Q18-->E mutation of Op18 in an adenocarcinoma. We addressed the functional consequences of aberrant Op18 expression in leukemias by analyzing the cell cycle of K562 cells either depleted of Op18 by expression of interfering hairpin RNA or induced to express wild-type or Q18E substituted Op18. We show here that although Op18 depletion increases microtubule density during interphase, the density of mitotic spindles is essentially unaltered and cells divide normally. This is consistent with phosphorylation-inactivation of Op18 during mitosis. Overexpression of wild-type Op18 results in aneugenic activities, manifest as aberrant mitosis, polyploidization, and chromosome loss. One particularly significant finding was that the aneugenic activity of Op18 was dramatically increased by the Q18-->E mutation. The hyperactivity of mutant Op18 is apparent in its unphosphorylated state, and this mutation also suppresses phosphorylation-inactivation of the microtubule-destabilizing activity of Op18 without any apparent effect on its phosphorylation status. Thus, although Op18 is dispensable for mitosis, the hyperactive Q18-->E mutant, or overexpressed wild-type Op18, exerts aneugenic effects that are likely to contribute to chromosomal instability in tumors.


Subject(s)
Chromosomal Instability , Leukemia/genetics , Spindle Apparatus/metabolism , Stathmin/genetics , Stathmin/metabolism , Aneugens/metabolism , Cell Cycle/genetics , Humans , Leukemia/metabolism , Leukemia/pathology , Microtubules/metabolism , Mitosis/genetics , Mutation , Phosphorylation , RNA Interference , Stathmin/antagonists & inhibitors , Tubulin/metabolism
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