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1.
PLoS Pathog ; 10(2): e1003912, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24516384

ABSTRACT

Effects of polyomavirus SV40 microRNA on pathogenesis of viral infections in vivo are not known. Syrian golden hamsters are the small animal model for studies of SV40. We report here effects of SV40 microRNA and influence of the structure of the regulatory region on dynamics of SV40 DNA levels in vivo. Outbred young adult hamsters were inoculated by the intracardiac route with 1×107 plaque-forming units of four different variants of SV40. Infected animals were sacrificed from 3 to 270 days postinfection and viral DNA loads in different tissues determined by quantitative real-time polymerase chain reaction assays. All SV40 strains displayed frequent establishment of persistent infections and slow viral clearance. SV40 had a broad tissue tropism, with infected tissues including liver, kidney, spleen, lung, and brain. Liver and kidney contained higher viral DNA loads than other tissues; kidneys were the preferred site for long-term persistent infection although detectable virus was also retained in livers. Expression of SV40 microRNA was demonstrated in wild-type SV40-infected tissues. MicroRNA-negative mutant viruses consistently produced higher viral DNA loads than wild-type SV40 in both liver and kidney. Viruses with complex regulatory regions displayed modestly higher viral DNA loads in the kidney than those with simple regulatory regions. Early viral transcripts were detected at higher levels than late transcripts in liver and kidney. Infectious virus was detected infrequently. There was limited evidence of increased clearance of microRNA-deficient viruses. Wild-type and microRNA-negative mutants of SV40 showed similar rates of transformation of mouse cells in vitro and tumor induction in weanling hamsters in vivo. This report identified broad tissue tropism for SV40 in vivo in hamsters and provides the first evidence of expression and function of SV40 microRNA in vivo. Viral microRNA dampened viral DNA levels in tissues infected by SV40 strains with simple or complex regulatory regions.


Subject(s)
MicroRNAs/genetics , Polyomavirus Infections/virology , RNA, Viral/genetics , Simian virus 40/genetics , Tumor Virus Infections/virology , Animals , Cricetinae , Female , Male , Mesocricetus , Polyomavirus Infections/genetics , Polyomavirus Infections/pathology , Real-Time Polymerase Chain Reaction , Tumor Virus Infections/genetics , Tumor Virus Infections/pathology , Viral Load
2.
J Virol ; 88(21): 12683-93, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25142594

ABSTRACT

UNLABELLED: Several different polyomaviruses (PyVs) encode microRNAs (miRNAs) that regulate viral as well as host gene expression. However, the functions of polyomaviral miRNAs, particularly during in vivo infection, remain poorly understood. Here we identify rare naturally arising PyVs that are severely attenuated or null for miRNA expression. We identify hypomorphic or null strains for miRNA expression from rhesus macaque simian virus 40 (SV40) and human JC virus. These strains were isolated from immunocompromised hosts and derive from insertions or deletions in the viral DNA that preserve the amino acid reading frame of opposing-strand large T antigen gene. Characterization of the SV40 miRNA hypomorph, K661, shows that it is inhibited at the early miRNA biogenesis step of Drosha-mediated processing. Despite having a nonrearranged enhancer, which a previous study has shown renders some PyVs more susceptible to the autoregulatory activities of the miRNA, restoring miRNA expression to K661 has little effect on virus growth in either immortalized or primary monkey kidney cells. Thus, in addition to any effect of accompanying genomic elements, these results suggest that the cellular context also determines susceptibility to PyV miRNA-mediated effects. Combined, these results demonstrate that polyomaviruses lacking miRNAs can arise infrequently and that the functional importance of polyomaviral miRNAs is context dependent, consistent with an activity connected to the immune status of the host. IMPORTANCE: Diverse virus families encode miRNAs, yet much remains unknown about viral miRNA function and contribution to the infectious cycle. Polyomaviruses (PyVs) are small DNA viruses, long known to be important as etiological agents of rare diseases and valuable models of DNA virus infection. Here, in immunosuppressed hosts, we uncover rare naturally arising variants of different PyVs that have lost the ability to express miRNAs. This represents some of the only known natural viruses to have lost miRNA expression. By probing the biogenesis pathways of these variants, we uncover that miRNA expression is lost via small insertions or deletions that render the transcripts resistant to early steps of miRNA biogenesis while preserving the reading frame of the opposing T antigen transcripts. Overall, our study informs how miRNA genes evolve/devolve in viruses and suggests that miRNA function is exquisitely dependent not only on viral genomic context but also on the cellular and host environment.


Subject(s)
Gene Expression Regulation, Viral , JC Virus/genetics , MicroRNAs/biosynthesis , Polyomavirus Infections/veterinary , Polyomavirus Infections/virology , Simian virus 40/genetics , Animals , Cell Line , Humans , Immunocompromised Host , JC Virus/isolation & purification , JC Virus/physiology , Macaca mulatta , MicroRNAs/genetics , Mutagenesis, Insertional , Sequence Deletion , Simian virus 40/isolation & purification , Simian virus 40/physiology , Virus Replication
3.
Virus Genes ; 49(3): 490-2, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25260554

ABSTRACT

A complete Human polyomavirus 9 (HPyV9) genome, designated HPyV9 UF-1, was amplified by rolling circle DNA amplification from DNA extracted from the peripheral blood mononuclear cells (PBMC) of an AIDS patient. The noncoding control (enhancer/promoter) region (NCCR) of HPyV9 UF-1 has one less AML-1a binding site and three more potential Sp1/GC box binding sites than the NCCRs of two previously described HPyV9 genomes. Nucleotide polymorphisms within the coding regions result in two amino acid differences in the deduced VP2 and VP3 proteins of HPyV9 UF-1 relative to those of the two previously described HPyV9 genomes. Exhaustive attempts to detect HPyV9 in DNA samples extracted from the PBMC of 40 healthy humans and 9 other AIDS patients were unsuccessful, highlighting the need for improved search strategies and optimal specimens for the detection of HPyV9 in humans.


Subject(s)
DNA, Viral/chemistry , DNA, Viral/genetics , Genome, Viral , Polyomavirus/genetics , Acquired Immunodeficiency Syndrome/complications , Base Sequence , Binding Sites , Humans , Leukocytes, Mononuclear/virology , Locus Control Region , Molecular Sequence Data , Polyomavirus/isolation & purification , Polyomavirus Infections/virology , Sequence Analysis, DNA
4.
Nat Rev Cancer ; 2(12): 957-64, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12459734

ABSTRACT

An increasing number of scientific reports have described evidence for a polyomavirus, simian virus 40, in a highly select group of human tumours. How did a simian virus infect humans and is the virus a passenger in tumours or is it important in their pathogenesis?


Subject(s)
Neoplasms/etiology , Neoplasms/virology , Simian virus 40/physiology , Simian virus 40/pathogenicity , Animals , Cell Transformation, Neoplastic , Disease Susceptibility , Genome, Viral , Humans , Mesothelioma/etiology , Mesothelioma/virology , Neoplasms/epidemiology , Neoplasms/pathology , Simian virus 40/genetics
5.
J Infect Dis ; 206(6): 875-80, 2012 Sep 15.
Article in English | MEDLINE | ID: mdl-22802433

ABSTRACT

BACKGROUND: Polyomavirus reactivation can cause significant morbidity in solid organ transplant recipients, particularly BK virus (BKV) in kidney transplant patients. Less is known about dynamics of John Cunningham virus (JCV) in nonkidney organ transplant patients. METHODS: We examined the frequency of urinary shedding of polyomaviruses BKV and JCV and their relationship to creatinine clearance (CrCl) in a longitudinal study of 41 kidney and 33 liver transplant recipients. RESULTS: Any polyomavirus urinary shedding was more frequent in liver than kidney recipients (64% vs 39%; P= .03). JCV was excreted more frequently by liver than kidney recipients (71% vs 38%), whereas BKV was shed more often by kidney than liver patients (69% vs 52%). Mean JCV loads were significantly higher than those of BKV in both patient groups (P< .0001). Lower mean CrCl values were significantly associated with JCV shedding in both kidney and liver recipients (P< .001). CONCLUSIONS: These findings suggest that BKV and JCV display different patterns of reactivation and shedding in kidney and liver transplant patients and that JCV may have a role in renal dysfunction in some solid organ transplant recipients.


Subject(s)
Creatinine/metabolism , JC Virus/physiology , Kidney Transplantation/adverse effects , Liver Transplantation/adverse effects , Polyomavirus Infections/virology , Tumor Virus Infections/virology , BK Virus/isolation & purification , Creatinine/blood , Female , Humans , Immunosuppressive Agents/administration & dosage , Immunosuppressive Agents/therapeutic use , Kidney/pathology , Kidney/virology , Kidney Diseases/pathology , Kidney Diseases/virology , Logistic Models , Male , Middle Aged , Polyomavirus Infections/urine , Risk Factors , Tumor Virus Infections/urine , Viral Load , Virus Shedding
6.
Emerg Infect Dis ; 16(11): 1702-9, 2010 Nov.
Article in English | MEDLINE | ID: mdl-21029527

ABSTRACT

To test the hypothesis that Merkel cell polyomavirus (MCPyV) can infect cells of the lymphoid system, we analyzed 353 specimens, including 152 non-Hodgkin lymphomas, 44 Hodgkin lymphomas, 110 benign lymph nodes, 27 lymph nodes with metastasis, and 20 extranodal tissue samples. MCPyV DNA was detected by quantitative PCR in 13 (6.6%) of 196 lymphomas, including 5 (20.8%) of 24 chronic lymphocytic leukemia specimens, and in 11 (10%) of 110 benign lymph nodes, including 8 (13.1%) of 61 samples of reactive hyperplasia and 3 (10.3%) of 29 normal lymph nodes. Other samples were MCPyV negative. Sequence analysis of 9 virus-positive samples confirmed the identity of MCPyV; 3 viral strains were represented. Immunohistochemical testing showed that 1 T-cell lymphoma expressed MCPyV T-antigen. These findings suggest that the lymphoid system plays a role in MCPyV infection and may be a site for MCPyV persistence.


Subject(s)
Carcinoma, Merkel Cell/virology , Lymph Nodes/virology , Polyomavirus Infections/epidemiology , Polyomavirus/classification , Tumor Virus Infections/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , DNA, Viral/isolation & purification , Female , Humans , Male , Middle Aged , Nova Scotia/epidemiology , Polyomavirus Infections/virology , Tumor Virus Infections/virology , Young Adult
7.
J Allergy Clin Immunol ; 123(4): 900-5, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19232702

ABSTRACT

BACKGROUND: It is unknown whether a prolonged period of bed rest will affect human immune responses, particularly in female subjects. OBJECTIVE: We sought to measure immune responses in adult female subjects exposed to prolonged bed rest. METHODS: Adult (25-40 years) female volunteers (n = 24) were maintained in a supine (6 degrees tilt) head-down bed-rest (HDBR) position for 60 days: 8 with HDBR only, 8 with HDBR and regular muscular exercise, and 8 with HDBR and dietary protein supplementation. Subjects were immunized with bacteriophage phiX-174. Antibody production and plasma cytokine levels were determined. RESULTS: The rate of primary antibody production of the HDBR plus exercise group increased faster (P = .01) and to a higher level versus that of the HDBR-only group (P = .03) and that of the HDBR plus diet group (trend P = .08). The rates of secondary antibody production between the 3 groups were similar, but the level of antibody in the HDBR plus exercise group remained higher versus that in the HDBR-only group (P = .03). Both the HDBR (P = .001) and HDBR plus diet (P = .02) groups had time-related progressive increases in TNF-alpha receptor levels, but the HDBR plus exercise group remained at baseline. The HDBR plus exercise group experienced an acute increase in IL-1 receptor antagonist levels versus the HDBR (P = .02) and the HDBR plus diet (P = .02) groups, with similar increases in RANTES levels. CONCLUSIONS: The exercise countermeasure accelerated primary antibody production and increased antibody levels to bacteriophage phiX-174 and also opposed the potentially harmful effects of increased TNF-alpha levels caused by prolonged bed rest, possibly by activating the anti-inflammatory cytokine IL-1 receptor antagonist and the chemotactic factor RANTES.


Subject(s)
Antibody Formation , Bed Rest , Cytokines/blood , Space Flight , Adult , Bacteriophage phi X 174/immunology , Chemokine CCL5/blood , Female , Humans , Immunization , Interleukin 1 Receptor Antagonist Protein/blood , Receptors, Tumor Necrosis Factor, Type I/blood
8.
Transl Lung Cancer Res ; 9(Suppl 1): S47-S59, 2020 Feb.
Article in English | MEDLINE | ID: mdl-32206570

ABSTRACT

Simian virus 40 (SV40) is a DNA tumor virus capable of infecting and transforming human mesothelial (HM) cells in vitro. Hamsters injected intracardially to expose most tissue types to SV40 preferentially develop mesotheliomas. In humans, asbestos is the main cause of mesothelioma, and asbestos and SV40 are co-carcinogens in transforming HM cells in tissue culture and in causing mesothelioma in hamsters. Laser microdissection experiments conducted in the laboratory of Adi Gazdar demonstrated that SV40 was present specifically in the malignant mesothelioma cells and not in nearby stromal cells. Further experiments demonstrated that SV40 remains episomal in HM cells and astrocytes because of the production of a long antisense RNA that represses viral capsid protein production. Thus, the potent SV40 oncoprotein, T-antigen (Tag), is expressed, but because the capsid proteins are not produced, the cells are not lysed and, instead, become transformed. Together this evidence suggests that SV40 may contribute to the development of mesotheliomas in humans. However, epidemiological evidence to support this hypothesis is lacking. This chapter also summarizes the introduction of SV40, a monkey virus, into the human population as an unrecognized contaminant of early poliovaccines. In addition to mesotheliomas, SV40 now is linked with brain cancers, osteosarcomas, and lymphomas in humans. Explanations are provided for the apparent geographic variations in SV40 prevalence and for controversies about the role of SV40 in human cancer.

9.
J Clin Microbiol ; 47(8): 2388-91, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19494079

ABSTRACT

We recently reported the frequent detection of polyomaviruses (BK virus [BKV] or simian virus 40 [SV40]) in 46% of stool samples from hospitalized children. In order to determine if adults exhibit fecal shedding of polyomavirus, single stool specimens from healthy adults were evaluated by PCR. Overall, 20 (18.2%) of 110 specimens were positive for human polyomaviruses: 9 with BKV, 9 with JC virus (JCV), 1 with SV40, and 1 with both JCV and SV40. Among the 94 subjects without immune compromise, 17 (18.1%) were excreting polyomaviruses. This shedding frequency in adults was significantly lower than that observed in children (P < 0.001). These findings support the hypothesis that the gastrointestinal tract may be a site of polyomavirus persistence, and they suggest a fecal-oral route of viral transmission.


Subject(s)
Carrier State/virology , Feces/virology , Polyomavirus Infections/virology , Polyomavirus/isolation & purification , Virus Shedding , Adult , Aged , Aged, 80 and over , DNA, Viral/genetics , Female , Humans , Male , Middle Aged , Polymerase Chain Reaction/methods , Prevalence , Young Adult
10.
J Virol ; 82(2): 871-9, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17977966

ABSTRACT

Most of the simian virus 40 (SV40) genome is conserved among isolates, but the noncoding regulatory region and the genomic region encoding the large T-antigen C terminus (T-ag-C) may exhibit considerable variation. We demonstrate here that SV40 isolates differ in their oncogenic potentials in Syrian golden hamsters. Experimental animals were inoculated intraperitoneally with 10(7) PFU of parental or recombinant SV40 viruses and were observed for 12 months to identify genetic determinants of oncogenicity. The viral regulatory region was found to exert a statistically significant influence on tumor incidence, whereas the T-ag-C played a minor role. Viruses with a single enhancer (1E) were more oncogenic than those with a two-enhancer (2E) structure. Rearrangements in the 1E viral regulatory region were detected in 4 of 60 (6.7%) tumors. Viral loads in tumors varied, with a median of 5.4 SV40 genome copies per cell. Infectious SV40 was rescued from 15 of 37 (40%) cell lines established from tumors. Most hamsters with tumors and many without tumors produced antibodies to T antigen. All viruses displayed similar transforming frequencies in vitro, suggesting that differences in oncogenic potential in vivo were due to host responses to viral infection. This study shows that SV40 strains differ in their biological properties, suggests that SV40 replicates to some level in hamsters, and indicates that the outcome of an SV40 infection may depend on the viral strain present.


Subject(s)
Enhancer Elements, Genetic , Neoplasms/virology , Simian virus 40/genetics , Simian virus 40/pathogenicity , Animals , Antigens, Polyomavirus Transforming/genetics , Antigens, Polyomavirus Transforming/immunology , Cell Transformation, Neoplastic , Cells, Cultured , Cricetinae , Fibroblasts/virology , Gene Rearrangement , Incidence , Mice , Recombination, Genetic
11.
Cancer Res ; 67(18): 8456-9, 2007 Sep 15.
Article in English | MEDLINE | ID: mdl-17875683

ABSTRACT

To assess the presence of SV40 in malignant mesothelioma tissue, 19 formalin-fixed paraffin-embedded pleural cancer samples of patients from a hyperendemic area of northeastern Italy were analyzed retrospectively. A total of 48 other tissues from the malignant mesothelioma subjects were investigated. The SV40 load was determined by real-time quantitative PCR. Exposure to asbestos was evaluated through a careful review of the occupational history of patients, supplemented by histology and isolation of asbestos bodies. Three of 19 (15.8%) malignant mesothelioma tissues harbored SV40 genomic signals. Two patients with SV40-positive malignant mesothelioma had viral sequences in another tissue. Overall, 3 of 18 (16.7%) normal liver tissues tested positive for SV40, as did 1 of 8 (12.5%) kidney tissues. SV40 viral loads were higher in malignant mesothelioma than in normal cells (P = 0.045). This survey shows that SV40 sustains infections in multiple tissues in malignant mesothelioma patients from a geographic area affected with asbestos-related mesothelioma.


Subject(s)
Asbestos/adverse effects , Cocarcinogenesis , Mesothelioma/etiology , Pleural Neoplasms/etiology , Polyomavirus Infections/complications , Simian virus 40/genetics , Tumor Virus Infections/complications , Adult , Aged , Aged, 80 and over , DNA, Viral/genetics , Endemic Diseases , Female , Humans , Male , Mesothelioma/epidemiology , Mesothelioma/virology , Middle Aged , Pleural Neoplasms/epidemiology , Pleural Neoplasms/virology , Polymerase Chain Reaction , Polyomavirus Infections/virology , Retrospective Studies , Tumor Virus Infections/virology
12.
J Infect ; 78(6): 476-483, 2019 06.
Article in English | MEDLINE | ID: mdl-30965068

ABSTRACT

OBJECTIVES: This study sought to determine SV40 seroprevalence in residents of two Latin American countries, Colombia and Nicaragua, which were sites of prelicensure oral poliovaccine (OPV) trials. METHODS: Archival sera were tested for SV40 neutralizing antibody using a virus-specific plaque-reduction assay. Samples included 517 sera from Colombia and 149 sera from Nicaragua. RESULTS: Overall SV40 seroprevalence was 22.8% for Colombian subjects and 12.8% for Nicaraguans. Subgroups of Colombian subjects ranged in frequency of SV40 seropositivity from 10.0% to 38.6%. Birth cohorts both older and younger than the age cohort that contained potential OPV vaccinees from both countries had SV40 antibodies. Gender and ethnicity had no significant effects on SV40 seropositivity. CONCLUSIONS: Inhabitants of both Colombia and Nicaragua had detectable SV40 neutralizing antibody, including those of ages presumably not recipients of potentially SV40-contaminated OPV. This observation provides support for the concept that transmission of SV40 human infections can occur. Frequency of SV40 antibody positivity was elevated over that reported for the US where there was limited use of contaminated OPV. This investigation indicates also that study results of SV40 infections in humans will reflect whether subject populations had probable exposures to contaminated poliovaccines and to environmental conditions favoring cycles of viral transmission.


Subject(s)
Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Poliovirus Vaccine, Oral/administration & dosage , Polyomavirus Infections/epidemiology , Polyomavirus Infections/immunology , Simian virus 40/isolation & purification , Adolescent , Adult , Biological Specimen Banks , Child , Cohort Studies , Colombia/epidemiology , Female , Humans , Male , Nicaragua/epidemiology , Seroepidemiologic Studies , Vaccination/statistics & numerical data , Young Adult
13.
J Clin Virol ; 43(1): 66-72, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18539521

ABSTRACT

BACKGROUND: BK virus (BKV), JC virus (JCV) and simian virus 40 (SV40) are nonenveloped DNA viruses, members of the family Polyomaviridae. BK and JC viruses establish persistent infections in humans, and evidence suggests that SV40 can infect humans, as well. Whether persistence occurs in the lymphoid system is unknown. METHODS: Paraffin-embedded tonsils from 220 immunocompetent children (mean age 9.3 years) were examined by polymerase chain reaction (PCR) to detect viral DNA of BKV, JCV, SV40, and Epstein-Barr virus (EBV). RESULTS: Polyomavirus-specific DNA sequences were detected in 8.3% (29/351) of specimens collected from 220 children. Twenty-one (9.5%) children had polyomavirus DNA present in at least one tonsil, with sequences identified as SV40 (n=20) and BKV (n=1). Polyomavirus JCV was not detected. Among patients positive for SV40, 8 of 14 (57%) contained viral DNA in both available tonsils. EBV DNA was detected in 99 (28.2%) samples from 67 (30.5%) patients. Eleven samples (3.1%) from 8 (3.6%) children were positive for both polyomavirus and EBV. SV40-positive children were significantly older than the SV40-negative subjects (P<0.001). T-antigen expression was detected in an SV40 DNA-positive tonsil by immunohistochemistry. CONCLUSIONS: These results suggest that SV40 can infect tonsils, that lymphoid tissue may represent a site for polyomavirus persistence, and that immunohistochemistry is not a useful detection assay when there are very few virus-infected cells in a tissue.


Subject(s)
Palatine Tonsil/virology , Pharyngeal Diseases/diagnosis , Polyomavirus Infections/diagnosis , Simian virus 40/isolation & purification , Tumor Virus Infections/diagnosis , Adolescent , Antigens, Polyomavirus Transforming/genetics , Antigens, Polyomavirus Transforming/isolation & purification , Child , Child, Preschool , Female , Herpesvirus 4, Human/isolation & purification , Humans , Immunocompetence , Male , Palatine Tonsil/pathology , Pharyngeal Diseases/virology , Polymerase Chain Reaction , Polyomavirus Infections/virology , Simian virus 40/genetics
14.
PLoS One ; 13(2): e0192799, 2018.
Article in English | MEDLINE | ID: mdl-29432481

ABSTRACT

BACKGROUND: Polyomaviruses, including simian virus 40 (SV40), display evidence of lymphotropic properties. This study analyzed the nature of SV40-human lymphocyte interactions in established cell lines and in primary lymphocytes. The effects of viral microRNA and the structure of the viral regulatory region on SV40 persistence were examined. RESULTS: SV40 DNA was maintained in infected B cell and myeloid cell lines during cell growth for at least 28 days. Limiting dilution analysis showed that low amounts of SV40 DNA (~2 copies per cell) were retained over time. Infected B cells remained viable and able to proliferate. Genome copies of the SV40 microRNA-null mutant persisted at higher levels than the DNA of wild-type viruses. Complex viral regulatory regions produced modestly higher DNA levels than simple regulatory regions. Viral large T-antigen protein was detected at low frequency and at low levels in infected B cells. Following infection of primary lymphocytes, SV40 DNA was detected in CD19+ B cells and CD14+ monocytes, but not in CD3+ T cells. Rescue attempts using either lysates of SV40-infected B lymphocytes, coculture of live cells, or infectious center assays all showed that replication-competent SV40 could be recovered on rare occasions. SV40 infections altered the expression of several B cell surface markers, with more pronounced changes following infections with the microRNA-null mutant. CONCLUSION: These findings indicate that SV40 can establish persistent infections in human B lymphocytes. The cells retain low copy numbers of viral DNA; the infections are nonproductive and noncytolytic but can occasionally produce infectious virus. SV40 microRNA negatively regulates the degree of viral effects on B cells. SIGNIFICANCE: Lymphocytes may serve as viral reservoirs and may function to disseminate polyomaviruses to different tissues in a host. To our knowledge, this report is the first extensive analysis of viral microRNA effects on SV40 infection of human lymphocytes.


Subject(s)
Lymphocytes/virology , MicroRNAs/genetics , RNA, Viral/genetics , Simian virus 40/genetics , Simian virus 40/pathogenicity , Antigens, CD/metabolism , Antigens, Polyomavirus Transforming/genetics , B-Lymphocytes/immunology , B-Lymphocytes/pathology , B-Lymphocytes/virology , Cell Line , Cell Proliferation , Cell Survival , Cell Transformation, Viral/genetics , Cell Transformation, Viral/immunology , Cells, Cultured , Genome, Viral , Host-Pathogen Interactions/genetics , Host-Pathogen Interactions/immunology , Humans , Lymphocytes/immunology , Mutation , Myeloid Cells/immunology , Myeloid Cells/pathology , Myeloid Cells/virology , Regulatory Sequences, Ribonucleic Acid
15.
J Pediatric Infect Dis Soc ; 5(2): 210-3, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27199472

ABSTRACT

Qualitative polymerase chain reaction (PCR) was used to determine the prevalence of fecal excretion of BK virus, JC virus, and simian virus 40 in 1-year-old infants. Overall, 17.8% of 321 specimens from 64.1% of 39 infants were polyomavirus positive. These data suggest that the gastrointestinal tract may be a site of polyomavirus persistence in humans.


Subject(s)
BK Virus/isolation & purification , Feces/virology , JC Virus/isolation & purification , Polyomavirus Infections/diagnosis , Simian virus 40/isolation & purification , Virus Shedding , DNA, Viral , Humans , Infant , Polymerase Chain Reaction
16.
PLoS One ; 11(1): e0145720, 2016.
Article in English | MEDLINE | ID: mdl-26731525

ABSTRACT

Simian Virus 40, experimentally assayed in vitro in different animal and human cells and in vivo in rodents, was classified as a small DNA tumor virus. In previous studies, many groups identified Simian Virus 40 sequences in healthy individuals and cancer patients using PCR techniques, whereas others failed to detect the viral sequences in human specimens. These conflicting results prompted us to develop a novel indirect ELISA with synthetic peptides, mimicking Simian Virus 40 capsid viral protein antigens, named mimotopes. This immunologic assay allowed us to investigate the presence of serum antibodies against Simian Virus 40 and to verify whether Simian Virus 40 is circulating in humans. In this investigation two mimotopes from Simian Virus 40 large T antigen, the viral replication protein and oncoprotein, were employed to analyze for specific reactions to human sera antibodies. This indirect ELISA with synthetic peptides from Simian Virus 40 large T antigen was used to assay a new collection of serum samples from healthy subjects. This novel assay revealed that serum antibodies against Simian Virus 40 large T antigen mimotopes are detectable, at low titer, in healthy subjects aged from 18-65 years old. The overall prevalence of reactivity with the two Simian Virus 40 large T antigen peptides was 20%. This new ELISA with two mimotopes of the early viral regions is able to detect in a specific manner Simian Virus 40 large T antigen-antibody responses.


Subject(s)
Antibodies, Viral/immunology , Antigens, Viral, Tumor/immunology , Peptides/immunology , Polyomavirus Infections/immunology , Simian virus 40/immunology , Tumor Virus Infections/immunology , Adolescent , Adult , Aged , Amino Acid Sequence , Animals , Antibodies, Viral/blood , Antigens, Viral, Tumor/blood , Antigens, Viral, Tumor/genetics , Capsid Proteins/genetics , Capsid Proteins/immunology , Enzyme-Linked Immunosorbent Assay/methods , Host-Pathogen Interactions/immunology , Humans , Middle Aged , Models, Molecular , Molecular Sequence Data , Peptides/chemistry , Peptides/genetics , Phylogeny , Polyomavirus Infections/blood , Polyomavirus Infections/virology , Protein Structure, Tertiary , Rabbits , Reproducibility of Results , Simian virus 40/classification , Simian virus 40/physiology , Tumor Virus Infections/blood , Tumor Virus Infections/virology , Young Adult
17.
Oncogene ; 22(33): 5164-72, 2003 Aug 11.
Article in English | MEDLINE | ID: mdl-12910253

ABSTRACT

Simian virus 40 (SV40) is a potent DNA tumor virus that is known to induce primary brain cancers and lymphomas in laboratory animals. SV40 oncogenesis is mediated by the viral large tumor antigen (T-ag), which inactivates the tumor-suppressor proteins p53 and pRb family members. During the last decade, independent studies using different molecular biology techniques have shown the presence of SV40 DNA, T-ag, or other viral markers in primary human brain cancers, and a systematic assessment of the data indicates that the virus is significantly associated with this group of human tumors. In addition, recent large independent studies showed that SV40 T-ag DNA is significantly associated with human non-Hodgkin's lymphoma (NHL). Although the prevalence of SV40 infections in humans is not known, numerous observations suggest that SV40 is a pathogen in the human population today. This review examines the molecular biology, pathology, and clinical data implicating SV40 in the pathogenesis of primary human brain cancers and NHL and discusses future research directions needed to define a possible etiologic role for SV40 in these malignancies.


Subject(s)
Brain Neoplasms/virology , Lymphoma, Non-Hodgkin/virology , Simian virus 40/genetics , Simian virus 40/pathogenicity , Amino Acid Sequence , Animals , Antigens, Polyomavirus Transforming/metabolism , Humans , Immunohistochemistry , Molecular Sequence Data , Protein Structure, Tertiary , Retinoblastoma Protein/metabolism , Sequence Homology, Amino Acid , Tumor Suppressor Protein p53/metabolism
18.
Oncogene ; 23(12): 2231-5, 2004 Mar 18.
Article in English | MEDLINE | ID: mdl-14676832

ABSTRACT

Simian virus 40 (SV40) is a DNA tumor virus known to induce cancers in laboratory animals. There are numerous reports of the detection of SV40 DNA and/or proteins in human malignancies of the same types as those induced by SV40 in animals, including brain cancers. However, known exposure to the virus has not yet been linked directly to cancer development in a specific individual. Here we describe the detection of SV40 sequences in the meningioma of a laboratory researcher who had a probable direct exposure to SV40 and subsequently developed a tumor positive for viral DNA sequences indistinguishable from those of the laboratory source. This case suggests a link between viral exposure and tumor development.


Subject(s)
Brain Neoplasms/virology , Laboratories, Hospital , Medical Laboratory Personnel , Meningioma/virology , Polyomavirus Infections , Simian virus 40/immunology , Tumor Virus Infections , Adult , Antigens, Polyomavirus Transforming/genetics , Antigens, Polyomavirus Transforming/immunology , Brain Neoplasms/cerebrospinal fluid , Brain Neoplasms/diagnosis , Brain Neoplasms/etiology , Brain Neoplasms/pathology , Brain Neoplasms/surgery , Cell Line, Tumor , Female , Gadolinium , Humans , Magnetic Resonance Imaging , Meningioma/cerebrospinal fluid , Meningioma/diagnosis , Meningioma/etiology , Meningioma/pathology , Meningioma/surgery , Polymerase Chain Reaction , Polymorphism, Genetic , Risk Factors , Sequence Analysis, DNA , Texas , Treatment Outcome
19.
J Clin Virol ; 34(1): 52-62, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16087125

ABSTRACT

BACKGROUND: The polyomaviruses that infect humans, BK virus (BKV), JC virus (JCV), and simian virus 40 (SV40), typically establish subclinical persistent infections. However, reactivation of these viruses in immunocompromised hosts is associated with renal nephropathy and hemorrhagic cystitis (HC) caused by BKV and with progressive multifocal leukoencephalopathy (PML) caused by JCV. Additionally, SV40 is associated with several types of human cancers including primary brain and bone cancers, mesotheliomas, and non-Hodgkin's lymphoma. Advancements in detection of these viruses may contribute to improved diagnosis and treatment of affected patients. OBJECTIVE: To develop sensitive and specific real time quantitative polymerase chain reaction (RQ-PCR) assays for the detection of T-antigen DNA sequences of the human polyomaviruses BKV, JCV, and SV40 using the ABI Prism 7000 Sequence Detection System. STUDY DESIGN: Assays for absolute quantification of the viral T-ag sequences were designed and the sensitivity and specificity were evaluated. A quantitative assay to measure the single copy human RNAse P gene was also developed and evaluated in order to normalize viral gene copy numbers to cell numbers. RESULTS: Quantification of the target genes is sensitive and specific over a 7 log dynamic range. Ten copies each of the viral and cellular genes are reproducibly and accurately detected. The sensitivity of detection of the RQ-PCR assays is increased 10- to 100-fold compared to conventional PCR and agarose gel protocols. The primers and probes used to detect the viral genes are specific for each virus and there is no cross reactivity within the dynamic range of the standard dilutions. The sensitivity of detection for these assays is not reduced in human cellular extracts; however, different DNA extraction protocols may affect quantification. CONCLUSION: These assays provide a technique for rapid and specific quantification of polyomavirus genomes per cell in human samples.


Subject(s)
BK Virus/isolation & purification , JC Virus/isolation & purification , Simian virus 40/isolation & purification , BK Virus/genetics , Base Sequence , Conserved Sequence , DNA Primers , Gene Amplification , Genome, Viral , Humans , JC Virus/genetics , Molecular Sequence Data , Oligonucleotide Probes , Plasmids , Reproducibility of Results , Sensitivity and Specificity , Sequence Alignment , Sequence Homology, Nucleic Acid , Simian virus 40/genetics
20.
Haematologica ; 90(12): 1635-42, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16330436

ABSTRACT

BACKGROUND AND OBJECTIVES: Simian virus 40 (SV40) is an oncogenic DNA virus implicated in some human malignancies, including lymphomas. In the present masked case-control study, we investigated the prevalence of SV40 sequences and the expression of the viral oncoprotein, large tumor antigen (T-ag), in lymphomas and control specimens from patients negative for the human immunodeficiency virus in Costa Rica. DESIGN AND METHODS: Coded specimens were anlyzed by polymerase chain reaction for SV40 and Epstein-Barr virus (EBV). SV40 sequences were confirmed by Southern blot and DNA sequence analysis. Immunohistochemistry was used to detect the expression of SV40 T-ag in coded samples and to immunophenotype the lymphomas. RESULTS: When samples were decoded, SV40 DNA sequences were detected significantly more often in lymphomas than in control samples (30/125, 24% vs. 0/91, 0%; p=0.001). SV40 DNA was detected in 26% and 10% of non-Hodgkin's and Hodgkin's lymphomas, respectively. EBV DNA was detected in 10% of lymphomas and 33% of control specimens. None of the lymphomas was positive for both SV40 and EBV. Expression of SV40 T-ag was detected in 64% of B-cell lymphomas that contained T-ag DNA sequences and in none of the samples negative for viral DNA. Not all cells in a positive tumor expressed T-ag and the reactions were relatively low intensity. A germinal center B-cell-like profile was frequently associated with SV40-positive lymphomas. Of note, 20% of patients with SV40-related lymphomas were born in the 1970s and 1980s. INTERPRETATION AND CONCLUSIONS: These results indicate that SV40 is significantly associated with some B-cell neoplasms in Costa Rica today.


Subject(s)
Antigens, Polyomavirus Transforming/analysis , Lymphoma/virology , Poliovirus Vaccine, Inactivated/adverse effects , Polyomavirus Infections/epidemiology , Simian virus 40/pathogenicity , Tumor Virus Infections/epidemiology , Adult , Case-Control Studies , Comorbidity , Costa Rica/epidemiology , DNA, Viral/analysis , Drug Contamination , Epstein-Barr Virus Infections/epidemiology , Female , Germinal Center/virology , HIV Seronegativity , Herpesvirus 4, Human/isolation & purification , Herpesvirus 4, Human/pathogenicity , Hodgkin Disease/epidemiology , Hodgkin Disease/virology , Humans , Liver Neoplasms/epidemiology , Liver Neoplasms/virology , Lymph Nodes/virology , Lymphoma/epidemiology , Lymphoma, B-Cell/epidemiology , Lymphoma, B-Cell/virology , Lymphoma, Non-Hodgkin/epidemiology , Lymphoma, Non-Hodgkin/virology , Male , Middle Aged , Palatine Tonsil/virology , Polyomavirus Infections/virology , Pseudolymphoma/epidemiology , Pseudolymphoma/virology , Simian virus 40/isolation & purification , Stomach Neoplasms/epidemiology , Stomach Neoplasms/virology , Tumor Virus Infections/virology
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