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1.
Mol Cell ; 80(1): 72-86.e7, 2020 10 01.
Article in English | MEDLINE | ID: mdl-32910895

ABSTRACT

Membrane protein biogenesis faces the challenge of chaperoning hydrophobic transmembrane helices for faithful membrane insertion. The guided entry of tail-anchored proteins (GET) pathway targets and inserts tail-anchored (TA) proteins into the endoplasmic reticulum (ER) membrane with an insertase (yeast Get1/Get2 or mammalian WRB/CAML) that captures the TA from a cytoplasmic chaperone (Get3 or TRC40, respectively). Here, we present cryo-electron microscopy reconstructions, native mass spectrometry, and structure-based mutagenesis of human WRB/CAML/TRC40 and yeast Get1/Get2/Get3 complexes. Get3 binding to the membrane insertase supports heterotetramer formation, and phosphatidylinositol binding at the heterotetramer interface stabilizes the insertase for efficient TA insertion in vivo. We identify a Get2/CAML cytoplasmic helix that forms a "gating" interaction with Get3/TRC40 important for TA insertion. Structural homology with YidC and the ER membrane protein complex (EMC) implicates an evolutionarily conserved insertion mechanism for divergent substrates utilizing a hydrophilic groove. Thus, we provide a detailed structural and mechanistic framework to understand TA membrane insertion.


Subject(s)
Membrane Proteins/biosynthesis , Membrane Proteins/chemistry , Multiprotein Complexes/metabolism , Cell Line , Conserved Sequence , Evolution, Molecular , Humans , Membrane Proteins/metabolism , Models, Molecular , Phosphatidylinositols/metabolism , Protein Binding , Protein Multimerization , Protein Stability , Protein Structure, Secondary , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism
2.
EMBO J ; 37(1): 139-159, 2018 01 04.
Article in English | MEDLINE | ID: mdl-29146773

ABSTRACT

Paraformaldehyde (PFA) is the most commonly used fixative for immunostaining of cells, but has been associated with various problems, ranging from loss of antigenicity to changes in morphology during fixation. We show here that the small dialdehyde glyoxal can successfully replace PFA Despite being less toxic than PFA, and, as most aldehydes, likely usable as a fixative, glyoxal has not yet been systematically tried in modern fluorescence microscopy. Here, we tested and optimized glyoxal fixation and surprisingly found it to be more efficient than PFA-based protocols. Glyoxal acted faster than PFA, cross-linked proteins more effectively, and improved the preservation of cellular morphology. We validated glyoxal fixation in multiple laboratories against different PFA-based protocols and confirmed that it enabled better immunostainings for a majority of the targets. Our data therefore support that glyoxal can be a valuable alternative to PFA for immunostaining.


Subject(s)
Fixatives/chemistry , Formaldehyde/chemistry , Glyoxal/chemistry , Immunohistochemistry/methods , Microscopy, Fluorescence/methods , Nerve Tissue Proteins/metabolism , Tissue Fixation/methods , Animals , COS Cells , Chlorocebus aethiops , Drosophila melanogaster , HeLa Cells , Humans , Mice
3.
J Cell Sci ; 132(13)2019 07 01.
Article in English | MEDLINE | ID: mdl-31182645

ABSTRACT

The transmembrane recognition complex (TRC) pathway targets tail-anchored (TA) proteins to the membrane of the endoplasmic reticulum (ER). While many TA proteins are known to be able to use this pathway, it is essential for the targeting of only a few. Here, we uncover a large number of TA proteins that engage with TRC40 when other targeting machineries are fully operational. We use a dominant-negative ATPase-impaired mutant of TRC40 in which aspartate 74 was replaced by a glutamate residue to trap TA proteins in the cytoplasm. Manipulation of the hydrophobic TA-binding groove in TRC40 (also known as ASNA1) reduces interaction with most, but not all, substrates suggesting that co-purification may also reflect interactions unrelated to precursor protein targeting. We confirm known TRC40 substrates and identify many additional TA proteins interacting with TRC40. By using the trap approach in combination with quantitative mass spectrometry, we show that Golgi-resident TA proteins such as the golgins golgin-84, CASP and giantin as well as the vesicle-associated membrane-protein-associated proteins VAPA and VAPB interact with TRC40. Thus, our results provide new avenues to assess the essential role of TRC40 in metazoan organisms.This article has an associated First Person interview with the first author of the paper.


Subject(s)
Arsenite Transporting ATPases/genetics , Mutation/genetics , Arsenite Transporting ATPases/metabolism , Cytoplasm/metabolism , Gene Silencing , HeLa Cells , Humans , Hydrophobic and Hydrophilic Interactions , Models, Biological , Protein Binding , Subcellular Fractions/metabolism , Substrate Specificity
4.
Protein J ; 38(3): 289-305, 2019 06.
Article in English | MEDLINE | ID: mdl-31203484

ABSTRACT

Due to their topology tail-anchored (TA) proteins must target to the membrane independently of the co-translational route defined by the signal sequence recognition particle (SRP), its receptor and the translocon Sec61. More than a decade of work has extensively characterized a highly conserved pathway, the yeast GET or mammalian TRC40 pathway, which is capable of countering the biogenetic challenge posed by the C-terminal TA anchor. In this review we briefly summarize current models of this targeting route and focus on emerging aspects such as the intricate interplay with the proteostatic network of cells and with other targeting pathways. Importantly, we consider the lessons provided by the in vivo analysis of the pathway in different model organisms and by the consideration of its full client spectrum in more recent studies. This analysis of the state of the field highlights directions in which the current models may be experimentally probed and conceptually extended.


Subject(s)
Cell Membrane/metabolism , Membrane Proteins , Saccharomyces cerevisiae Proteins/metabolism , Signal Recognition Particle , Animals , Humans , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Mice , Protein Processing, Post-Translational , Protein Transport , Saccharomyces cerevisiae/metabolism , Signal Recognition Particle/chemistry , Signal Recognition Particle/metabolism
5.
Sci Rep ; 6: 39464, 2016 12 21.
Article in English | MEDLINE | ID: mdl-28000760

ABSTRACT

Tail-anchored (TA) proteins are post-translationally inserted into membranes. The TRC40 pathway targets TA proteins to the endoplasmic reticulum via a receptor comprised of WRB and CAML. TRC40 pathway clients have been identified using in vitro assays, however, the relevance of the TRC40 pathway in vivo remains unknown. We followed the fate of TA proteins in two tissue-specific WRB knockout mouse models and found that their dependence on the TRC40 pathway in vitro did not predict their reaction to receptor depletion in vivo. The SNARE syntaxin 5 (Stx5) was extremely sensitive to disruption of the TRC40 pathway. Screening yeast TA proteins with mammalian homologues, we show that the particular sensitivity of Stx5 is conserved, possibly due to aggregation propensity of its cytoplasmic domain. We establish that Stx5 is an autophagy target that is inefficiently membrane-targeted by alternative pathways. Our results highlight an intimate relationship between the TRC40 pathway and cellular proteostasis.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Adenosine Triphosphatases/metabolism , Membrane Proteins/metabolism , Qa-SNARE Proteins/metabolism , Alleles , Animals , Autophagy , Cytoplasm/metabolism , HeLa Cells , Humans , Membrane Proteins/genetics , Mice , Mice, Knockout , Myocytes, Cardiac/cytology , Proteasome Endopeptidase Complex/metabolism , Protein Domains , Proteostasis , RNA, Small Interfering/metabolism
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