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1.
Magn Reson Med ; 91(1): 252-265, 2024 01.
Article in English | MEDLINE | ID: mdl-37769229

ABSTRACT

PURPOSE: Accelerate multislice 2D MRI by using RF pulses that simultaneously act on different slices to combine contrast preparation and image acquisition. THEORY AND METHODS: MRI applications often require the use of multiple RF pulses to generate desired contrast and prepare the signal for readout. Examples are the use of inversion prepulses to generate T1 contrast, or the use of spin-echo preparations to generate T2 or diffusion contrast. In multislice MRI, this separation of contrast preparation and readout can render scans time-inefficient and lengthy. We introduce a class of pulse sequences that overcomes this inefficiency by combining contrast preparation and signal readout. This is accomplished by using RF pulses that manipulate the magnetization of multiple slices simultaneously and a gradient crusher scheme that selects a target slice for readout. RESULTS: Feasibility of the method was demonstrated for spin echo-based measurement of water diffusion and tissue pulsation in human brain at 3 T. Increases in time-efficiency and reductions in scan time were highly dependent on specific implementation and reached as high as 25% and 53%, respectively. CONCLUSION: A novel approach to multislice MRI is demonstrated that reduces scan time for specific applications.


Subject(s)
Brain , Magnetic Resonance Imaging , Humans , Phantoms, Imaging , Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Head
2.
Neuroimage ; 270: 119992, 2023 04 15.
Article in English | MEDLINE | ID: mdl-36858332

ABSTRACT

MR images of the effective relaxation rate R2* and magnetic susceptibility χ derived from multi-echo T2*-weighted (T2*w) MRI can provide insight into iron and myelin distributions in the brain, with the potential of providing biomarkers for neurological disorders. Quantification of R2* and χ at submillimeter resolution in the cortex in vivo has been difficult because of challenges such as head motion, limited signal to noise ratio, long scan time, and motion related magnetic field fluctuations. This work aimed to improve the robustness for quantifying intracortical R2* and χ and analyze the effects from motion, spatial resolution, and cortical orientation. T2*w data was acquired with a spatial resolution of 0.3 × 0.3 × 0.4 mm3 at 7 T and downsampled to various lower resolutions. A combined correction for motion and B0 changes was deployed using volumetric navigators. Such correction improved the T2*w image quality rated by experienced image readers and test-retest reliability of R2* and χ quantification with reduced median inter-scan differences up to 10 s-1 and 5 ppb, respectively. R2* and χ near the line of Gennari, a cortical layer high in iron and myelin, were as much as 10 s-1 and 10 ppb higher than the region at adjacent cortical depth. In addition, a significant effect due to the cortical orientation relative to the static field (B0) was observed in χ with a peak-to-peak amplitude of about 17 ppb. In retrospectively downsampled data, the capability to distinguish different cortical depth regions based on R2* or χ contrast remained up to isotropic 0.5 mm resolution. This study highlights the unique characteristics of R2* and χ along the cortical depth at submillimeter resolution and the need for motion and B0 corrections for their robust quantification in vivo.


Subject(s)
Brain , Magnetic Resonance Imaging , Humans , Reproducibility of Results , Retrospective Studies , Magnetic Resonance Imaging/methods , Motion
3.
Neuroimage ; 249: 118888, 2022 04 01.
Article in English | MEDLINE | ID: mdl-35017126

ABSTRACT

During sleep, slow waves of neuro-electrical activity engulf the human brain and aid in the consolidation of memories. Recent research suggests that these slow waves may also promote brain health by facilitating the removal of metabolic waste, possibly by orchestrating the pulsatile flow of cerebrospinal fluid (CSF) through local neural control over vascular tone. To investigate the role of slow waves in the generation of CSF pulsations, we analyzed functional MRI data obtained across the full sleep-wake cycle and during a waking respiratory task. This revealed a novel generating mechanism that relies on the autonomic regulation of cerebral vascular tone without requiring slow electrocortical activity or even sleep. Therefore, the role of CSF pulsations in brain waste clearance may, in part, depend on proper autoregulatory control of cerebral blood flow.


Subject(s)
Arousal/physiology , Autonomic Nervous System/physiology , Brain Waves/physiology , Cerebrospinal Fluid/physiology , Pulsatile Flow/physiology , Sleep Stages/physiology , Adult , Humans , Magnetic Resonance Imaging
4.
Neuroimage ; 264: 119720, 2022 12 01.
Article in English | MEDLINE | ID: mdl-36332366

ABSTRACT

Resting-state functional magnetic resonance imaging (rsfMRI) allows the study of functional brain connectivity based on spatially structured variations in neuronal activity. Proper evaluation of connectivity requires removal of non-neural contributions to the fMRI signal, in particular hemodynamic changes associated with autonomic variability. Regression analysis based on autonomic indicator signals has been used for this purpose, but may be inadequate if neuronal and autonomic activities covary. To investigate this potential co-variation, we performed rsfMRI experiments while concurrently acquiring electroencephalography (EEG) and autonomic indicator signals, including heart rate, respiratory depth, and peripheral vascular tone. We identified a recurrent and systematic spatiotemporal pattern of fMRI (named as fMRI cascade), which features brief signal reductions in salience and default-mode networks and the thalamus, followed by a biphasic global change with a sensory-motor dominance. This fMRI cascade, which was mostly observed during eyes-closed condition, was accompanied by large EEG and autonomic changes indicative of arousal modulations. Importantly, the removal of the fMRI cascade dynamics from rsfMRI diminished its correlations with various signals. These results suggest that the rsfMRI correlations with various physiological and neural signals are not independent but arise, at least partly, from the fMRI cascades and associated neural and physiological changes at arousal modulations.


Subject(s)
Brain Mapping , Rest , Humans , Brain Mapping/methods , Rest/physiology , Electroencephalography/methods , Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Brain/physiology
5.
Neuroimage ; 258: 119362, 2022 09.
Article in English | MEDLINE | ID: mdl-35688316

ABSTRACT

Cerebrospinal fluid (CSF) provides physical protection to the central nervous system as well as an essential homeostatic environment for the normal functioning of neurons. Additionally, it has been proposed that the pulsatile movement of CSF may assist in glymphatic clearance of brain metabolic waste products implicated in neurodegeneration. In awake humans, CSF flow dynamics are thought to be driven primarily by cerebral blood volume fluctuations resulting from a number of mechanisms, including a passive vascular response to blood pressure variations associated with cardiac and respiratory cycles. Recent research has shown that mechanisms that rely on the action of vascular smooth muscle cells ("cerebrovascular activity") such as neuronal activity, changes in intravascular CO2, and autonomic activation from the brainstem, may lead to CSF pulsations as well. Nevertheless, the relative contribution of these mechanisms to CSF flow remains unclear. To investigate this further, we developed an MRI approach capable of disentangling and quantifying CSF flow components of different time scales associated with these mechanisms. This approach was evaluated on human control subjects (n = 12) performing intermittent voluntary deep inspirations, by determining peak flow velocities and displaced volumes between these mechanisms in the fourth ventricle. We found that peak flow velocities were similar between the different mechanisms, while displaced volumes per cycle were about a magnitude larger for deep inspirations. CSF flow velocity peaked at around 10.4 s (range 7.1-14.8 s, n = 12) following deep inspiration, consistent with known cerebrovascular activation delays for this autonomic challenge. These findings point to an important role of cerebrovascular activity in the genesis of CSF pulsations. Other regulatory triggers for cerebral blood flow such as autonomic arousal and orthostatic challenges may create major CSF pulsatile movement as well. Future quantitative comparison of these and possibly additional types of CSF pulsations with the proposed approach may help clarify the conditions that affect CSF flow dynamics.


Subject(s)
Cerebrovascular Circulation , Magnetic Resonance Imaging , Brain/physiology , Brain Stem , Cerebrospinal Fluid/physiology , Cerebrovascular Circulation/physiology , Humans , Pulsatile Flow/physiology
6.
Hum Brain Mapp ; 43(5): 1766-1782, 2022 04 01.
Article in English | MEDLINE | ID: mdl-34957633

ABSTRACT

Outliers in neuroimaging represent spurious data or the data of unusual phenotypes that deserve special attention such as clinical follow-up. Outliers have usually been detected in a supervised or semi-supervised manner for labeled neuroimaging cohorts. There has been much less work using unsupervised outlier detection on large unlabeled cohorts like the UK Biobank brain imaging dataset. Given its large sample size, rare imaging phenotypes within this unique cohort are of interest, as they are often clinically relevant and could be informative for discovering new processes. Here, we developed a two-level outlier detection and screening methodology to characterize individual outliers from the multimodal MRI dataset of more than 15,000 UK Biobank subjects. In primary screening, using brain ventricles, white matter, cortical thickness, and functional connectivity-based imaging phenotypes, every subject was parameterized with an outlier score per imaging phenotype. Outlier scores of these imaging phenotypes had good-to-excellent test-retest reliability, with the exception of resting-state functional connectivity (RSFC). Due to the low reliability of RSFC outlier scores, RSFC outliers were excluded from further individual-level outlier screening. In secondary screening, the extreme outliers (1,026 subjects) were examined individually, and those arising from data collection/processing errors were eliminated. A representative subgroup of 120 subjects from the remaining non-artifactual outliers were radiologically reviewed, and radiological findings were identified in 97.5% of them. This study establishes an unsupervised framework for investigating rare individual imaging phenotypes within a large neuroimaging cohort.


Subject(s)
Brain , Magnetic Resonance Imaging , Brain/diagnostic imaging , Humans , Neuroimaging/methods , Phenotype , Reproducibility of Results
7.
NMR Biomed ; 35(8): e4730, 2022 08.
Article in English | MEDLINE | ID: mdl-35297114

ABSTRACT

Manually segmenting multiple sclerosis (MS) cortical lesions (CLs) is extremely time consuming, and past studies have shown only moderate inter-rater reliability. To accelerate this task, we developed a deep-learning-based framework (CLAIMS: Cortical Lesion AI-Based Assessment in Multiple Sclerosis) for the automated detection and classification of MS CLs with 7 T MRI. Two 7 T datasets, acquired at different sites, were considered. The first consisted of 60 scans that include 0.5 mm isotropic MP2RAGE acquired four times (MP2RAGE×4), 0.7 mm MP2RAGE, 0.5 mm T2 *-weighted GRE, and 0.5 mm T2 *-weighted EPI. The second dataset consisted of 20 scans including only 0.75 × 0.75 × 0.9 mm3 MP2RAGE. CLAIMS was first evaluated using sixfold cross-validation with single and multi-contrast 0.5 mm MRI input. Second, the performance of the model was tested on 0.7 mm MP2RAGE images after training with either 0.5 mm MP2RAGE×4, 0.7 mm MP2RAGE, or alternating the two. Third, its generalizability was evaluated on the second external dataset and compared with a state-of-the-art technique based on partial volume estimation and topological constraints (MSLAST). CLAIMS trained only with MP2RAGE×4 achieved results comparable to those of the multi-contrast model, reaching a CL true positive rate of 74% with a false positive rate of 30%. Detection rate was excellent for leukocortical and subpial lesions (83%, and 70%, respectively), whereas it reached 53% for intracortical lesions. The correlation between disability measures and CL count was similar for manual and CLAIMS lesion counts. Applying a domain-scanner adaptation approach and testing CLAIMS on the second dataset, the performance was superior to MSLAST when considering a minimum lesion volume of 6 µL (lesion-wise detection rate of 71% versus 48%). The proposed framework outperforms previous state-of-the-art methods for automated CL detection across scanners and protocols. In the future, CLAIMS may be useful to support clinical decisions at 7 T MRI, especially in the field of diagnosis and differential diagnosis of MS patients.


Subject(s)
Deep Learning , Multiple Sclerosis , Humans , Magnetic Resonance Imaging/methods , Multiple Sclerosis/diagnostic imaging , Multiple Sclerosis/pathology , Reproducibility of Results
8.
Magn Reson Med ; 85(6): 3196-3210, 2021 06.
Article in English | MEDLINE | ID: mdl-33480108

ABSTRACT

PURPOSE: Low-field (<1 tesla) MRI scanners allow more widespread diagnostic use for a range of cardiac, musculoskeletal, and neurological applications. However, the feasibility of performing robust fMRI at low field has yet to be fully demonstrated. To address this gap, we investigated task-based fMRI using a highly sensitive transition-band balanced steady-state free precession approach and standard EPI on a 0.55 tesla scanner equipped with modern high-performance gradient coils and a receive array. METHODS: TR and flip-angle of transition-band steady-state free precession were optimized for 0.55 tesla by simulations. Static shimming was employed to compensate for concomitant field effects. Visual task-based fMRI data were acquired from 8 healthy volunteers. For comparison, standard EPI data were also acquired with TE = T2∗ . Retrospective image-based correction for physiological effects (RETROICOR) was used to quantify physiological noise effects. RESULTS: Activation was robustly detected using both methods in a 4-min scan time. Transition-band steady-state free precession was found to be sensitive to interference from subtle spatial and temporal (field drift, respiration) variations in the magnetic field, counteracting potential advantages of the reduced magnetic susceptibility effects compared to its utilization at high field. These adverse effects could be partially remedied with static shimming and postprocessing approaches. Standard EPI proved more robust against the sources of interference. CONCLUSION: BOLD contrast is sufficiently large at 0.55 tesla for robust detection of brain activation and may be employed to broaden the spectrum of applications of low-field MRI. Standard EPI outperforms transition-band steady-state free precession in terms of signal stability.


Subject(s)
Brain Mapping , Magnetic Resonance Imaging , Brain/diagnostic imaging , Healthy Volunteers , Humans , Retrospective Studies
9.
Neuroimage ; 206: 116332, 2020 02 01.
Article in English | MEDLINE | ID: mdl-31689535

ABSTRACT

T2*-weighted gradient echo (GRE) MRI at high field is uniquely sensitive to the magnetic properties of tissue and allows the study of brain and vascular anatomy at high spatial resolution. However, it is also sensitive to B0 field changes induced by head motion and physiological processes such as the respiratory cycle. Conventional motion correction techniques do not take these field changes into account, and consequently do not fully recover image quality in T2*-weighted MRI. Here, a novel approach was developed to address this by monitoring the B0 field with a volumetric EPI phase navigator. The navigator was acquired at a shorter echo time than that of the (higher resolution) T2*-weighted GRE imaging data and accelerated with parallel imaging for high temporal resolution. At 4 â€‹mm isotropic spatial resolution and 0.54 â€‹s temporal resolution, the accuracy for estimation of rotation and translation was better than 0.2° and 0.1 â€‹mm, respectively. The 10% and 90% percentiles of B0 measurement error using the navigator were -1.8 and 1.5 Hz  at 7 T, respectively. A fast retrospective reconstruction algorithm correcting for both motion and nonlinear B0 changes was also developed. The navigator and reconstruction algorithm were evaluated in correcting motion-corrupted high-resolution T2*-weighted GRE MRI on healthy human subjects at 7 â€‹T. Excellent image quality was demonstrated with the proposed correction method.


Subject(s)
Algorithms , Artifacts , Brain/diagnostic imaging , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Magnetic Resonance Imaging/methods , Movement , Humans , Magnetic Fields , Motion , Rotation
10.
Neuroimage ; 213: 116700, 2020 06.
Article in English | MEDLINE | ID: mdl-32145438

ABSTRACT

Tissue longitudinal relaxation characterized by recovery time T1 or rate R1 is a fundamental MRI contrast mechanism that is increasingly being used to study the brain's myelination patterns in both health and disease. Nevertheless, the quantitative relationship between T1 and myelination, and its dependence on B0 field strength, is still not well known. It has been theorized that in much of brain tissue, T1 field-dependence is driven by that of macromolecular protons (MP) through a mechanism called magnetization transfer (MT). Despite the explanatory power of this theory and substantial support from in-vitro experiments at low fields (<3 â€‹T), in-vivo evidence across clinically relevant field strengths is lacking. In this study, T1-weighted MRI was acquired in a group of eight healthy volunteers at four clinically relevant field strengths (0.55, 1.5, 3 and 7 â€‹T) using the same pulse sequence at a single site, and jointly analyzed based on the two-pool model of MT. MP fraction and free-water pool T1 were obtained in several brain structures at 3 and 7 â€‹T, which allowed distinguishing between contributions from macromolecular content and iron to tissue T1. Based on this, the T1 of MP in white matter, indirectly determined by assuming a field independent T1 of free water, was shown to increase approximately linearly with B0. This study advances our understanding of the T1 contrast mechanism and its relation to brain myelin content across the wide range of currently available MRI strengths, and it has the potential to inform design of T1 mapping methods for improved reproducibility in the human brain.


Subject(s)
Brain Mapping/methods , Brain , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Adult , Humans
11.
Magn Reson Med ; 83(3): 883-891, 2020 03.
Article in English | MEDLINE | ID: mdl-31502706

ABSTRACT

PURPOSE: Up to 30% of the hydrogen atoms in brain tissue are part of molecules ("semisolids") other than water. In MRI, their magnetization is typically not observed directly, but can influence the water magnetization through magnetization transfer (MT). Comparison of MRI scans differentially sensitized to MT allows estimation of the semisolid fraction and potential changes with disease. Here, we present an approach designed to improve this estimate by measuring the size of the MT effect in a single scan. METHODS: A stimulated echo sequence was used to generate a spatial pattern in the longitudinal water magnetization, which was then given time to exchange with semisolids. After saturating the remaining water magnetization, reverse exchange was allowed to partly re-establish the original water magnetization pattern. The third excitation pulse then formed a stimulated echo out of this pattern. RESULTS: MT data were obtained on 10 human subjects at 7 T with varying exchange times. The images showed the expected time dependence of signal associated with the forward and reverse exchange processes. Excellent suppression of non-exchanging background signal was achieved. As expected, this suppression came at the price of a substantial reduction in exchange-related signal (by ~75% compared to the signal in saturation recovery MT), in part because of the reliance on a 2-step exchange process. CONCLUSION: The results demonstrate an MT signal can be observed in a single acquisition without subtraction. This may be advantageous for MT measurements when signal instabilities related to motion and physiological variations exceed thermal noise sources.


Subject(s)
Brain Mapping , Brain/diagnostic imaging , Magnetic Resonance Imaging , Adult , Algorithms , Humans , Hydrogen , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional , Magnetics , Motion , Signal-To-Noise Ratio , Water , Young Adult
12.
Magn Reson Med ; 84(6): 3494-3501, 2020 12.
Article in English | MEDLINE | ID: mdl-32662913

ABSTRACT

PURPOSE: To demonstrate a practical implementation of an eight-channel parallel-transmit system for brain imaging at 7 T based on on-coil amplifier technology. METHODS: An eight-channel parallel transmit-receive system was built with optimized on-coil switch-mode current RF power amplifiers. The amplifiers were optically controlled from an eight-channel interface that was connected to a 7 T MRI scanner. The interface also optically received a down-converted version of the coil current sensed in each amplifier for monitoring and feedback adjustments. RESULTS: Each on-coil amplifier delivered more than 100 W peak power and provided enough amplifier decoupling (<-15 dB) for the implemented eight-channel array configuration. Phantom and human images were acquired to demonstrate practical operation of this new technology in a 7 T MRI scanner. CONCLUSION: Further development and improvement of previously demonstrated on-coil technology led to successful implementation of an eight-channel parallel-transmit system able to deliver strong B1 fields for typical brain imaging applications. This is an important step forward toward implementation of on-coil RF amplification for high-field MRI.


Subject(s)
Amplifiers, Electronic , Magnetic Resonance Imaging , Brain/diagnostic imaging , Equipment Design , Humans , Phantoms, Imaging , Radio Waves
13.
Magn Reson Med ; 81(1): 628-638, 2019 01.
Article in English | MEDLINE | ID: mdl-30230605

ABSTRACT

PURPOSE: Magnetization exchange (ME) between hydrogen protons of water and large molecules (semisolids [SS]) in lipid bilayers is an important factor in MRI signal generation and can be exploited to study white matter pathology. Current models used to quantify ME in white matter generally consider water to reside in 1 or 2 distinct compartments, ignoring the complexities of the myelin sheath's multicompartment structure of alternating myelin SS and myelin water (MW) layers. Here, we investigated the effect of this by fitting ME data obtained from human brain at 7 T with a multilayer model of myelin. METHODS: A multi-echo acquisition for a T2* -based separation of MW from other water signals was combined with various preparation pulses to change the (relative) state of the SS and water pools and analyzed by fitting with a multilayer exchange model. RESULTS: The estimated lifetime within a single MW layer was 260 µs, corresponding to a lipid bilayer permeability of 6.7 µm/s. The magnetization lifetime of the aggregate of all MW was estimated at 13 ms, shorter than previously reported values in the range of 40 to 140 ms. CONCLUSION: Contrary to expectations and previous reports, ME between protons in myelin SS and water is not limited by the myelin sheath but rather by the exchange between SS and water protons. The analysis of ME contrast should account for the relatively short MW lifetime and affects the interpretation of tissue compartmentalization from MRI contrasts such as T1 - and diffusion-weighting.


Subject(s)
Magnetic Resonance Imaging , Myelin Sheath/chemistry , Myelin Sheath/pathology , White Matter/diagnostic imaging , Adult , Algorithms , Brain/diagnostic imaging , Computer Simulation , Female , Humans , Image Processing, Computer-Assisted , Kinetics , Lipid Bilayers/chemistry , Magnetic Resonance Spectroscopy , Male , Middle Aged , Neuroimaging , Permeability , Protons , Water/analysis , Young Adult
14.
Proc Natl Acad Sci U S A ; 113(16): 4518-23, 2016 Apr 19.
Article in English | MEDLINE | ID: mdl-27051064

ABSTRACT

Changes in brain activity accompanying shifts in vigilance and arousal can interfere with the study of other intrinsic and task-evoked characteristics of brain function. However, the difficulty of tracking and modeling the arousal state during functional MRI (fMRI) typically precludes the assessment of arousal-dependent influences on fMRI signals. Here we combine fMRI, electrophysiology, and the monitoring of eyelid behavior to demonstrate an approach for tracking continuous variations in arousal level from fMRI data. We first characterize the spatial distribution of fMRI signal fluctuations that track a measure of behavioral arousal; taking this pattern as a template, and using the local field potential as a simultaneous and independent measure of cortical activity, we observe that the time-varying expression level of this template in fMRI data provides a close approximation of electrophysiological arousal. We discuss the potential benefit of these findings for increasing the sensitivity of fMRI as a cognitive and clinical biomarker.


Subject(s)
Arousal/physiology , Brain Waves/physiology , Brain/physiology , Synaptic Transmission/physiology , Animals , Brain/diagnostic imaging , Macaca , Magnetic Resonance Imaging , Radiography
15.
Neuroimage ; 168: 152-161, 2018 03.
Article in English | MEDLINE | ID: mdl-28242317

ABSTRACT

A rapidly developing application of high field MRI is the study of brain anatomy and function with contrast based on the magnetic susceptibility of tissues. To study the subtle variations in susceptibility contrast between tissues and with changes in brain activity, dedicated scan techniques such as susceptibility-weighted MRI and blood-oxygen level dependent functional MRI have been developed. Particularly strong susceptibility contrast has been observed with systems that operate at 7T and above, and their recent widespread use has led to an improved understanding of contributing sources and mechanisms. To interpret magnetic susceptibility contrast, analysis approaches have been developed with the goal of extracting measures that report on local tissue magnetic susceptibility, a physical quantity that, under certain conditions, allows estimation of blood oxygenation, local tissue iron content, and quantification of its changes with disease. Interestingly, high field studies have also brought to light that not only the makeup of tissues affects MRI susceptibility contrast, but that also a tissue's sub-voxel structure at scales all the way down to the molecular level plays an important role as well. In this review, various ways will be discussed by which sub-voxel structure can affect the MRI signal in general, and magnetic susceptibility in particular, sometimes in a complex fashion. In the light of this complexity, it appears likely that accurate, brain-wide quantification of iron will require the combination of multiple contrasts that may include diffusion and magnetization transfer information with susceptibility-weighted contrast. On the other hand, this complexity also offers opportunities to use magnetic susceptibility contrast to inform about specific microstructural aspects of brain tissue. Details and several examples will be presented in this review.


Subject(s)
Cerebral Cortex/anatomy & histology , Cerebral Cortex/diagnostic imaging , Ferritins , Magnetic Phenomena , Magnetic Resonance Imaging/methods , Nerve Fibers, Myelinated , White Matter/anatomy & histology , White Matter/diagnostic imaging , Cerebral Cortex/metabolism , Humans , White Matter/metabolism
16.
Neuroimage ; 180(Pt B): 485-494, 2018 10 15.
Article in English | MEDLINE | ID: mdl-29355767

ABSTRACT

The brain is a complex system that integrates and processes information across multiple time scales by dynamically coordinating activities over brain regions and circuits. Correlations in resting-state functional magnetic resonance imaging (rsfMRI) signals have been widely used to infer functional connectivity of the brain, providing a metric of functional associations that reflects a temporal average over an entire scan (typically several minutes or longer). Not until recently was the study of dynamic brain interactions at much shorter time scales (seconds to minutes) considered for inference of functional connectivity. One method proposed for this objective seeks to identify and extract recurring co-activation patterns (CAPs) that represent instantaneous brain configurations at single time points. Here, we review the development and recent advancement of CAP methodology and other closely related approaches, as well as their applications and associated findings. We also discuss the potential neural origins and behavioral relevance of CAPs, along with methodological issues and future research directions in the analysis of fMRI co-activation patterns.


Subject(s)
Brain Mapping/methods , Brain/physiology , Nerve Net/physiology , Humans , Magnetic Resonance Imaging/methods , Rest/physiology
17.
Neuroimage ; 181: 292-300, 2018 11 01.
Article in English | MEDLINE | ID: mdl-29981905

ABSTRACT

Recent advances in BOLD fMRI scan techniques have substantially improved spatial and temporal resolution, currently reaching to sub-millimeter and sub-second levels respectively. Unfortunately, there remain physiological barriers that prevent achieving this resolution in practice. BOLD contrast relies on the hemodynamic response to neuronal activity, whose associated cerebral blood oxygenation (CBO) changes may spread over several millimeters and last several seconds. Recent reports have suggested that significant improvements may be possible with cerebral blood volume (CBV)-weighted fMRI, which highlights the CBV changes rather than the BOLD changes associated with the hemodynamic response. Nevertheless, quantitative comparisons between CBV and BOLD are sparse, in particular regarding their temporal characteristics in human brain. To address this, we studied a cohort of subjects that received injection of ferumoxytol, an intravascular iron-oxide based contrast agent that introduces strong CBV contrast. An event-related visual stimulus paradigm was used to compare the impulse response (IR) for CBV and BOLD contrast, obtained with and without ferumoxytol, respectively. Experiments performed at 7 T (n = 5) at 1.2-1.5 mm spatial and 1 s temporal resolution showed that the onset time and time-to-peak of the CBV IR averaged 0.8 and 3.5 s respectively, both 0.6 s shorter than the BOLD IR. While significant, these improvements are relatively small and not expected to lead to practical advantages for the extraction of temporal information about neural activity. Nonlinearities in the observed IR were also compared and found to be similar between the CBV and BOLD, indicating that these are likely not caused by a 'ceiling' effect in the CBO response, but rather support a previously proposed model of vascular compliance, in which changes in vascular tone elicited by a preceding stimulus affect the IR.


Subject(s)
Cerebral Blood Volume/physiology , Functional Neuroimaging/methods , Image Enhancement/methods , Impulsive Behavior/physiology , Magnetic Resonance Imaging/methods , Neurovascular Coupling/physiology , Oxygen/blood , Psychomotor Performance/physiology , Visual Perception/physiology , Adult , Contrast Media/administration & dosage , Ferrosoferric Oxide/administration & dosage , Humans , Time Factors
18.
Neuroimage ; 176: 541-549, 2018 08 01.
Article in English | MEDLINE | ID: mdl-29704614

ABSTRACT

To investigate a potential contribution of systemic physiology to recently reported BOLD fMRI signals in white matter, we compared photo-plethysmography (PPG) and whole-brain fMRI signals recorded simultaneously during long resting-state scans from an overnight sleep study. We found that intermittent drops in the amplitude of the PPG signal exhibited strong and widespread correlations with the fMRI signal, both in white matter (WM) and in gray matter (GM). The WM signal pattern resembled that seen in previous resting-state fMRI studies and closely tracked the location of medullary veins. Its temporal cross-correlation with the PPG amplitude was bipolar, with an early negative value. In GM, the correlation was consistently positive. Consistent with previous studies comparing physiological signals with fMRI, these findings point to a systemic vascular contribution to WM fMRI signals. The PPG drops are interpreted as systemic vasoconstrictive events, possibly related to intermittent increases in sympathetic tone related to fluctuations in arousal state. The counter-intuitive polarity of the WM signal is explained by long blood transit times in the medullary vasculature of WM, which cause blood oxygenation loss and a substantial timing mismatch between blood volume and blood oxygenation effects. A similar mechanism may explain previous findings of negative WM signals around large draining veins during both task- and resting-state fMRI.


Subject(s)
Functional Neuroimaging/methods , Gray Matter/physiology , Neurovascular Coupling/physiology , Photoplethysmography/methods , Vasoconstriction/physiology , White Matter/physiology , Adult , Cerebral Veins/physiology , Electroencephalography , Female , Gray Matter/diagnostic imaging , Humans , Magnetic Resonance Imaging , Male , Medulla Oblongata/blood supply , Sleep/physiology , Time Factors , White Matter/diagnostic imaging , Young Adult
19.
Magn Reson Med ; 80(6): 2538-2548, 2018 Dec.
Article in English | MEDLINE | ID: mdl-29770481

ABSTRACT

PURPOSE: To identify and characterize the sources of B0 field changes due to head motion, to reduce motion sensitivity in human brain MRI. METHODS: B0 fields were measured in 5 healthy human volunteers at various head poses. After measurement of the total field, the field originating from the subject was calculated by subtracting the external field generated by the magnet and shims. A subject-specific susceptibility model was created to quantify the contribution of the head and torso. The spatial complexity of the field changes was analyzed using spherical harmonic expansion. RESULTS: Minor head pose changes can cause substantial and spatially complex field changes in the brain. For rotations and translations of approximately 5 º and 5 mm, respectively, at 7 T, the field change that is associated with the subject's magnetization generates a standard deviation (SD) of about 10 Hz over the brain. The stationary torso contributes to this subject-associated field change significantly with a SD of about 5 Hz. The subject-associated change leads to image-corrupting phase errors in multi-shot T 2 * -weighted acquisitions. CONCLUSION: The B0 field changes arising from head motion are problematic for multishot T 2 * -weighted imaging. Characterization of the underlying sources provides new insights into mitigation strategies, which may benefit from individualized predictive field models in addition to real-time field monitoring and correction strategies.


Subject(s)
Brain/diagnostic imaging , Head Movements , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging , Algorithms , Computer Simulation , Head/diagnostic imaging , Healthy Volunteers , Humans , Models, Theoretical , Phantoms, Imaging
20.
Magn Reson Med ; 79(5): 2833-2841, 2018 05.
Article in English | MEDLINE | ID: mdl-28905426

ABSTRACT

PURPOSE: To develop a new optically controlled on-coil amplifier that facilitates safe use of multi-channel radiofrequency (RF) transmission in MRI by real-time monitoring of signal phase and amplitude. METHODS: Monitoring was carried out with a 4-channel prototype system by sensing, down sampling, digitizing, and optically transmitting the RF transmit signal to a remote PC to control the amplifiers. Performance was evaluated with benchtop and 7 T MRI experiments. RESULTS: Monitored amplitude and phase were stable across repetitions and had standard deviations of 0.061 µT and 0.0073 rad, respectively. The feedback system allowed inter-channel phase and B1 amplitude to be adjusted within two iterations. MRI experiments demonstrated the feasibility of this approach to perform safe and accurate multi-channel RF transmission and monitoring at high field. CONCLUSION: We demonstrated a 4-channel transceiver system based on optically controlled on-coil amplifiers with RF signal monitoring and feedback control. The approach allows the safe and precise control of RF transmission fields, required to achieve uniform excitation at high field. Magn Reson Med 79:2833-2841, 2018. © 2017 International Society for Magnetic Resonance in Medicine.


Subject(s)
Amplifiers, Electronic , Magnetic Resonance Imaging/instrumentation , Radio Waves , Equipment Design , Feedback , Phantoms, Imaging
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