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1.
Biochemistry ; 59(4): 346-350, 2020 02 04.
Article in English | MEDLINE | ID: mdl-31868354

ABSTRACT

The formation of the mollusk shell requires the participation of proteins, many of which may be interactive with one another. We examined a model protein pair system from the mollusk Haliotis rufescens, wherein we probed the interactions between recombinant forms of two major nacre layer proteins, AP7, and the glycoprotein, AP24. Here, the focus was on the impact that the AP24 glycosylation and primary sequence had on AP24-AP7 binding. We find that both the glycosylated and nonglycosylated variants of AP24 bound to AP7 but with different quantities, kinetics, and internal rearrangements. Moreover, the binding of AP7 with nonglycosylated and glycosylated AP24 was found to be Ca(II)-dependent and -independent, respectively. Yet both variants of AP24 combine with AP7 to form hybrid hydrogel particles that are similar in their physical properties. Thus, AP7 and AP24 protein sequences are interactive and form hydrogels, but the interactions are tuned by glycosylation and Ca(II). These features may have an impact on the nacre matrix formation.


Subject(s)
Animal Shells/metabolism , Mollusca/metabolism , Nacre/metabolism , Amino Acid Sequence/genetics , Animal Shells/chemistry , Animals , Calcification, Physiologic/genetics , Calcium/metabolism , Calcium Carbonate/chemistry , Gastropoda/chemistry , Glycoproteins/metabolism , Glycosylation , Hydrogels/metabolism , Kinetics , Mollusca/chemistry , Nacre/chemistry , Nacre/genetics
2.
Proteomics ; 19(16): e1900036, 2019 08.
Article in English | MEDLINE | ID: mdl-31219243

ABSTRACT

There are over 62 different biominerals on Earth and a diverse array of organisms that generate these biominerals for survival. This review will introduce the process of biomineralization and the current understanding of the molecular mechanisms of mineral formation, and then comparatively explore the representative secretomes of two well-documented skeletal systems: vertebrate bone (calcium phosphate) and invertebrate mollusk shell (calcium carbonate). It is found that both skeletal secretomes have gross similarities and possess proteins that fall into four functional categories: matrix formers, nucleation assisters, communicators, and remodelers. In many cases the mineral-associated matrix former and nucleation assister sequences in both skeletal systems are unique and possess interactive conserved globular domains, intrinsic disorder, post-translational modifications, sequence redundancy, and amyloid-like aggregation-prone sequences. Together, these molecular features create a protein-based environment that facilitates mineral formation and organization and argue in favor of conserved features that evolve from the mollusk shell to bone. Interestingly, the mollusk shell secretome appears to be more complex compared to that of bone tissue, in that there are numerous protein subcategories that are required for the nucleation and organization of inner (nacre) and outer (prismatic) calcium carbonate regions of the shell. This may reflect the organizational and material requirements of an exoskeletal protective system.


Subject(s)
Arthropod Proteins/metabolism , Biomineralization , Mollusca/metabolism , Nacre/metabolism , Proteome/metabolism , Animal Shells/metabolism , Animals , Arthropod Proteins/chemistry , Calcium Carbonate/metabolism , Models, Molecular , Mollusca/chemistry , Nacre/chemistry , Protein Conformation , Proteome/chemistry
3.
Biochemistry ; 57(21): 3032-3035, 2018 05 29.
Article in English | MEDLINE | ID: mdl-29757633

ABSTRACT

The formation of embryonic mineralized skeletal elements (spicules) in the sea urchin requires the participation of proteins, many of which may interact with one another and assist in the creation of an extracellular matrix wherein mineral formation takes place. To probe this, we created a sea urchin spicule recombinant model protein pair system wherein we tested the interactions between two major spicule proteins, SpSM50 and the glycoprotein, SpSM30B/C. Both proteins are strong hydrogelators that manipulate early and later events in mineral formation. We discovered that the anionic glycan moieties of SpSM30B/C are required for interaction with the SpSM50 protein and that these interactions are Ca(II)-independent. In addition, when these proteins form a complex, they create hybrid hydrogel particles that are physically distinct from their individual counterparts. Thus, glycan-mediated interactions play an important role in in vitro spicule protein assembly and most likely within the spicule itself.


Subject(s)
Cytoskeletal Proteins/chemistry , Extracellular Matrix Proteins/chemistry , Animals , Cytoskeletal Proteins/metabolism , Embryo, Nonmammalian/metabolism , Extracellular Matrix Proteins/metabolism , Glycoproteins/metabolism , Glycosylation , Minerals/metabolism , Recombinant Proteins/metabolism , Sea Urchins/embryology , Sea Urchins/metabolism
4.
Biochemistry ; 57(18): 2657-2666, 2018 05 08.
Article in English | MEDLINE | ID: mdl-29620882

ABSTRACT

In the nacre layer of the Pinctada fucata oyster shell there exists a multimember proteome, known as the framework family, which regulates the formation of the aragonite mesoscale tablets and participates in the creation of an organic coating around each tablet. Several approaches have been developed to understand protein-associated mechanisms of nacre formation, yet we still lack insight into how protein ensembles or proteomes manage nucleation and crystal growth. To provide additional insights we have created a proportionally defined combinatorial model consisting of two recombinant framework proteins, r-Pif97 (containing a von Willebrand Factor Type A domain (vWA)) and r-n16.3 (containing an EGF-like domain), whose individual in vitro mineralization functionalities are distinct from one another. We find that at 1:1 molar ratios r-Pif97 and r-n16.3 exhibit little or no synergistic activity regarding modifying existing calcite crystals. However, during the early stages of nucleation in solution, we note synergistic effects on nucleation kinetics and ACC formation/stability (via dehydration) that are not observed for the individual proteins. This selective synergism is generated by Ca2+-mediated protein-protein interactions (∼4 molecules of r-n16.3 per 1 molecule of r-Pif97) which lead to the formation of nucleation-responsive hybrid hydrogel particles in solution. Interestingly, in the absence of Ca2+ there are no significant interactions occurring between the two proteins. This unique behavior of the framework-associated n16.3 and Pif97 proteins suggests that the Asp/Glu-containing regions of the vWA and EGF-like domains may play a role in both nacre matrix formation and mineralization.


Subject(s)
EGF Family of Proteins/chemistry , Nacre/chemistry , Pinctada/chemistry , von Willebrand Factor/chemistry , Animal Shells/chemistry , Animals , Calcium Carbonate/chemistry , Crystallization , Hydrogels/chemistry , Kinetics , Nacre/genetics , Pinctada/genetics , Proteome/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , von Willebrand Factor/genetics
5.
Biochemistry ; 56(21): 2663-2675, 2017 05 30.
Article in English | MEDLINE | ID: mdl-28478667

ABSTRACT

In the purple sea urchin Strongylocentrotus purpuratus, the formation and mineralization of fracture-resistant skeletal elements such as the embryonic spicule require the combinatorial participation of numerous spicule matrix proteins such as SpSM50. However, because of its limited abundance and solubility issues, it has been difficult to pursue extensive in vitro biochemical studies of SpSM50 protein and deduce its role in spicule formation and mineralization. To circumvent these problems, we expressed a tag-free bacterial model recombinant spicule matrix protein, rSpSM50. Bioinformatics and biophysical experiments confirm that rSpSM50 is an intrinsically disordered, aggregation-prone C-type lectin-like domain-containing protein that forms dimensionally and internally heterogeneous protein hydrogels that control the in vitro mineralization process in three ways. The hydrogels (1) kinetically stabilize the aqueous calcium carbonate system against nucleation and thermodynamically destabilize the initially formed ACC in bulk solution, (2) promote and organize faceted single-crystal calcite and polycrystalline vaterite nanoparticles, and (3) promote surface texturing of calcite crystals and induce subsurface nanoporosities and channels within both calcite and vaterite crystals. Many of these features are also common to mollusk shell nacre proteins and the sea urchin spicule matrix glycoprotein, SpSM30B/C, and we conclude that rSpSM50 is a spiculogenesis hydrogelator protein that exhibits traits found in other calcium carbonate mineral-modification proteins.


Subject(s)
Extracellular Matrix Proteins/metabolism , Recombinant Proteins/metabolism , Sea Urchins/metabolism , Animals , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/genetics , Models, Molecular , Recombinant Proteins/chemistry , Thermodynamics
6.
Biochemistry ; 56(28): 3607-3618, 2017 07 18.
Article in English | MEDLINE | ID: mdl-28649833

ABSTRACT

In the nacre or aragonitic layer of an oyster pearl, there exists a 12-member proteome that regulates both the early stages of nucleation and nanoscale-to-mesoscale assembly of nacre tablets and calcitic crystals from mineral nanoparticle precursors. Several approaches to understanding protein-associated mechanisms of pearl nacre formation have been developed, yet we still lack insight into how protein ensembles or proteomes manage nucleation and crystal growth. To provide additional insights, we have created a proportionally defined combinatorial model consisting of two pearl nacre-associated proteins, PFMG1 and PFMG2 (shell oyster pearl nacre, Pinctada fucata) whose individual in vitro mineralization functionalities are distinct from one another. Using scanning electron microscopy, atomic force microscopy, Ca(II) potentiometric titrations, and quartz crystal microbalance with dissipation monitoring quantitative analyses, we find that at 1:1 molar ratios, rPFMG2 and rPFMG1 co-aggregate in specific molecular ratios to form hybrid hydrogels that affect both the early and later stages of in vitro calcium carbonate nucleation. Within these hybrid hydrogels, rPFMG2 plays a role in defining protein co-aggregation and hydrogel dimension, whereas rPFMG1 defines participation in nonclassical nucleation processes; both proteins exhibit synergy with regard to surface and subsurface modifications to existing crystals. The interactions between both proteins are enhanced by Ca(II) ions and may involve Ca(II)-induced conformational events within the EF-hand rPFMG1 protein, as well as putative interactions between the EF-hand domain of rPFMG1 and the calponin-like domain of rPFMG2. Thus, the pearl-associated PFMG1 and PFMG2 proteins interact and exhibit mineralization functionalities in specific ways, which may be relevant for pearl formation.


Subject(s)
Hydrogel, Polyethylene Glycol Dimethacrylate/metabolism , Nacre/metabolism , Pinctada/metabolism , Proteins/metabolism , Animals , Calcium-Binding Proteins/chemistry , Crystallization , EF Hand Motifs , Microfilament Proteins/chemistry , Microscopy, Atomic Force , Microscopy, Electron, Scanning , Models, Molecular , Pinctada/ultrastructure , Protein Aggregates , Protein Domains , Proteins/chemistry , Calponins
7.
Biochemistry ; 55(7): 1024-35, 2016 Feb 23.
Article in English | MEDLINE | ID: mdl-26784838

ABSTRACT

The impacts of glycosylation on biomineralization protein function are largely unknown. This is certainly true for the mollusk shell, where glycosylated intracrystalline proteins such as AP24 (Haliotis rufescens) exist but their functions and the role of glycosylation remain elusive. To assess the effect of glycosylation on protein function, we expressed two recombinant variants of AP24: an unglycosylated bacteria-expressed version (rAP24N) and a glycosylated insect cell-expressed version (rAP24G). Our findings indicate that rAP24G is expressed as a single polypeptide containing variations in glycosylation that create microheterogeneity in rAP24G molecular masses. These post-translational modifications incorporate O- and N-glycans and anionic monosialylated and bisialylated, and monosulfated and bisulfated monosaccharides on the protein molecules. AFM and DLS experiments confirm that both rAP24N and rAP24G aggregate to form protein phases, with rAP24N exhibiting a higher degree of aggregation, compared to rAP24G. With regard to functionality, we observe that both recombinant proteins exhibit similar behavior within in vitro calcium carbonate mineralization assays and potentiometric titrations. However, rAP24G modifies crystal growth directions and is a stronger nucleation inhibitor, whereas rAP24N exhibits higher mineral phase stabilization and nanoparticle containment. We believe that the post-translational addition of anionic groups (via sialylation and sulfation), along with modifications to the protein surface topology, may explain the changes in glycosylated rAP24G aggregation and mineralization behavior, relative to rAP24N.


Subject(s)
Gastropoda/chemistry , Glycoproteins/chemistry , Nacre/chemistry , Protein Processing, Post-Translational , Scleroproteins/chemistry , Amino Acid Sequence , Animals , Calcification, Physiologic , Computational Biology , Escherichia coli , Gastropoda/ultrastructure , Glycoproteins/genetics , Glycoproteins/metabolism , Glycosylation , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Molecular Sequence Data , Molecular Weight , Polysaccharides/chemistry , Polysaccharides/metabolism , Protein Aggregates , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Scleroproteins/genetics , Scleroproteins/metabolism , Sf9 Cells , Spodoptera
8.
Biochemistry ; 55(31): 4410-21, 2016 08 09.
Article in English | MEDLINE | ID: mdl-27426695

ABSTRACT

In the purple sea urchin Strongylocentrotus purpuratus, the formation and mineralization of fracture-resistant skeletal elements such as the embryonic spicule require the combinatorial participation of numerous spicule matrix proteins such as the SpSM30A-F isoforms. However, because of limited abundance, it has been difficult to pursue extensive biochemical studies of the SpSM30 proteins and deduce their role in spicule formation and mineralization. To circumvent these problems, we expressed a model recombinant spicule matrix protein, rSpSM30B/C, which possesses the key sequence attributes of isoforms "B" and "C". Our findings indicate that rSpSM30B/C is expressed in insect cells as a single polypeptide containing variations in glycosylation that create microheterogeneity in rSpSM30B/C molecular masses. These post-translational modifications incorporate O- and N-glycans and anionic mono- and bisialylated and mono- and bisulfated monosaccharides on the protein molecules and enhance its aggregation propensity. Bioinformatics and biophysical experiments confirm that rSpSM30B/C is an intrinsically disordered, aggregation-prone protein that forms porous protein hydrogels that control the in vitro mineralization process in three ways: (1) increase the time interval for prenucleation cluster formation and transiently stabilize an ACC polymorph, (2) promote and organize single-crystal calcite nanoparticles, and (3) promote faceted growth and create surface texturing of calcite crystals. These features are also common to mollusk shell nacre proteins, and we conclude that rSpSM30B/C is a spiculogenesis protein that exhibits traits found in other calcium carbonate mineral modification proteins.


Subject(s)
Cytoskeletal Proteins/chemistry , Cytoskeletal Proteins/metabolism , Strongylocentrotus purpuratus/metabolism , Amino Acid Sequence , Animals , Binding Sites , Calcium Carbonate/chemistry , Calcium Carbonate/metabolism , Cytoskeletal Proteins/genetics , Glycosylation , Hydrogels , Microscopy, Atomic Force , Microscopy, Electron, Scanning , Minerals/chemistry , Minerals/metabolism , Models, Molecular , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Multimerization , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Strongylocentrotus purpuratus/chemistry , Strongylocentrotus purpuratus/genetics
9.
Biochemistry ; 55(16): 2401-10, 2016 04 26.
Article in English | MEDLINE | ID: mdl-27072850

ABSTRACT

In the nacre or aragonite layer of the mollusk shell, proteomes that regulate both the early stages of nucleation and nano-to-mesoscale assembly of nacre tablets from mineral nanoparticle precursors exist. Several approaches have been developed to understand protein-associated mechanisms of nacre formation, yet we still lack insight into how protein ensembles or proteomes manage nucleation and crystal growth. To provide additional insights, we have created a proportionally defined combinatorial model consisting of two nacre-associated proteins, C-RING AP7 (shell nacre, Haliotis rufescens) and pseudo-EF hand PFMG1 (oyster pearl nacre, Pinctada fucata), whose individual in vitro mineralization functionalities are well-documented and distinct from one another. Using scanning electron microscopy, flow cell scanning transmission electron microscopy, atomic force microscopy, Ca(II) potentiometric titrations, and quartz crystal microbalance with dissipation monitoring quantitative analyses, we find that both nacre proteins are functionally active within the same mineralization environments and, at 1:1 molar ratios, synergistically create calcium carbonate mesoscale structures with ordered intracrystalline nanoporosities, extensively prolong nucleation times, and introduce an additional nucleation event. Further, these two proteins jointly create nanoscale protein aggregates or phases that under mineralization conditions further assemble into protein-mineral polymer-induced liquid precursor-like phases with enhanced ACC stabilization capabilities, and there is evidence of intermolecular interactions between AP7 and PFMG1 under these conditions. Thus, a combinatorial model system consisting of more than one defined biomineralization protein dramatically changes the outcome of the in vitro biomineralization process.


Subject(s)
Gastropoda/metabolism , Nacre/metabolism , Pinctada/metabolism , Proteins/metabolism , Animals , Crystallization , Gastropoda/chemistry , Gastropoda/ultrastructure , Nacre/analysis , Pinctada/chemistry , Pinctada/ultrastructure , Proteins/analysis
10.
Biochemistry ; 54(34): 5348-55, 2015 Sep 01.
Article in English | MEDLINE | ID: mdl-26258941

ABSTRACT

The formation of the mollusk nacre layer involves the assembly and organization of mineral nanoparticles into fracture-toughened mesoscale-sized aragonite tablets that possess intracrystalline nanoporosities. At least one nacre protein family, known as the framework proteome, is strategically located as part of a macromolecular coating around each nacre tablet and is believed to participate in tablet formation. Here, we report new studies of a recombinant form (rPif97) of a unique Japanese pearl oyster (Pinctada fucata) nacre framework biomineralization protein, Pif97. This unique protein possesses both a von Willlebrand factor type A domain (vWA, F23-Y161) and a Peritrophin A chitin-binding domain (PAC, E234-D298). rPif97 self-associates or aggregates to form amorphous protein phases that organize both amorphous and single-crystal calcium carbonate nanoparticles in vitro. Further, in the presence of nucleating calcite crystals, rPif97 protein phases deposit onto these crystals and become occluded over time, forming nanochambers within the crystal interior. The formation of these mineral-modifying amorphous protein phases is linked to the presence of intrinsic disorder and amyloid-like cross-ß-strand aggregation-prone regions, and three-dimensional modeling indicates that both the vWA and PAC domains are accessible for intermolecular interactions. Thus, the vWA- and PAC-containing Pif97 protein exhibits key functionalities that would allow its participation in mollusk nacre layer tablet assembly and porosity formation.


Subject(s)
Minerals/metabolism , Nacre/metabolism , Nanoparticles/metabolism , Pinctada/metabolism , Proteins/metabolism , Animals , Carrier Proteins/chemistry , Carrier Proteins/genetics , Carrier Proteins/metabolism , Chitin/metabolism , Crystallization , Intrinsically Disordered Proteins/chemistry , Intrinsically Disordered Proteins/genetics , Intrinsically Disordered Proteins/metabolism , Microscopy, Atomic Force , Microscopy, Electron , Minerals/chemistry , Models, Molecular , Nacre/chemistry , Nanoparticles/chemistry , Pinctada/genetics , Protein Multimerization , Protein Structure, Tertiary , Proteins/chemistry , Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , von Willebrand Factor/chemistry
11.
Biopolymers ; 103(2): 96-108, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25298002

ABSTRACT

Amelogenin protein has the potential to interact with other enamel matrix proteins, mineral, and cell surfaces. We investigated the interactions of recombinant amelogenin rP172 with small unilamellar vesicles as model membranes, toward the goal of understanding the mechanisms of amelogenin-cell interactions during amelogenesis. Dynamic light scattering (DLS), fluorescence spectroscopy, circular dichroism (CD), and nuclear magnetic resonance (NMR) were used. In the presence of phospholipid vesicles, a blue shift in the Trp fluorescence emission maxima of rP172 was observed (∼334 nm) and the Trp residues of rP172 were inaccessible to the aqueous quencher acrylamide. DLS studies indicated complexation of rP172 and phospholipids, although the possibility of fusion of phospholipids following amelogenin addition cannot be ruled out. NMR and CD studies revealed a disorder-order transition of rP172 in a model membrane environment. Strong fluorescence resonance energy transfer from Trp in rP172 to DNS-bound-phospholipid was observed, and fluorescence polarization studies indicated that rP172 interacted with the hydrophobic core region of model membranes. Our data suggest that amelogenin has ability to interact with phospholipids and that such interactions may play key roles in enamel biomineralization as well as reported amelogenin signaling activities.


Subject(s)
Amelogenin/chemistry , Amelogenin/metabolism , Phospholipids/chemistry , Phospholipids/metabolism , Circular Dichroism , Hydrogen-Ion Concentration , Protein Binding , Protein Conformation , Scattering, Radiation , Spectrometry, Fluorescence
12.
Biochemistry ; 53(46): 7259-68, 2014 Nov 25.
Article in English | MEDLINE | ID: mdl-25355304

ABSTRACT

The mollusk shell nacre layer integrates mineral phases with macromolecular components such as intracrystalline proteins. However, the roles performed by intracrystalline proteins in calcium carbonate nucleation and subsequent postnucleation events (e.g., organization of mineral deposits) in the nacre layer are not known. We find that AP7, a nacre intracrystalline C-RING protein, self-assembles to form amorphous protein oligomers and films on mica that further assemble into larger aggregates or phases in the presence of Ca2+. Using solution nuclear magnetic resonance spectroscopy, we determine that the protein assemblies are stabilized by interdomain interactions involving the aggregation-prone T31-N66 C-terminal C-RING domain but are destabilized by the labile nature of the intrinsically disordered D1-T19 AA N-terminal sequence. Thus, the dynamic, amorphous nature of the AP7 assemblies can be traced to the molecular behavior of the N-terminal sequence. Using potentiometric methods, we observe that AP7 protein phases prolong the time interval for prenucleation cluster formation but neither stabilize nor destabilize ACC clusters. Time-resolved flow cell scanning transmission electron microscopy mineralization studies confirm that AP7 protein phases delay the onset of nucleation and assemble and organize mineral nanoparticles into ring-shaped branching clusters in solution. These phenomena are not observed in protein-deficient assays. We conclude that C-RING AP7 protein phases modulate the time period for early events in nucleation and form strategic associations with forming mineral nanoparticles that lead to mineral organization.


Subject(s)
Gastropoda/metabolism , Nacre/metabolism , Nanoparticles/metabolism , Proteins/chemistry , Amino Acid Sequence , Animals , Calcium/metabolism , Gastropoda/chemistry , Molecular Sequence Data , Nacre/chemistry , Nanoparticles/chemistry , Nanoparticles/ultrastructure , Protein C , Protein Structure, Tertiary , Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
13.
Biochemistry ; 53(16): 2739-48, 2014 Apr 29.
Article in English | MEDLINE | ID: mdl-24720254

ABSTRACT

The mollusk shell is a complex biological material that integrates mineral phases with organic macromolecular components such as proteins. The role of proteins in the formation of the nacre layer (aragonite mineral phase) is poorly understood, particularly with regard to the organization of mineral deposits within the protein extracellular matrix and the identification of which proteins are responsible for this task. We report new experiments that provide insight into the role of the framework nacre protein, n16.3 (Pinctada fucata), as an organizer or assembler of calcium carbonate mineral clusters. Using a combination of biophysical techniques, we find that recombinant n16.3 (r-n16.3) oligomerizes to form amorphous protein films and particles that possess regions of disorder and mobility. These supramolecular assemblies possess an intrinsically disordered C-terminal region (T64-W98) and reorganize in the presence of Ca(2+) ions to form clustered protein oligomers. This Ca(2+)-induced reorganization leads to alterations in the molecular environments of Trp residues, the majority of which reside in putative aggregation-prone cross-ß strand regions. Potentiometric Ca(2+) titrations reveal that r-n16.3 does not significantly affect the formation of prenucleation clusters in solution, and this suggests a role for this protein in postnucleation mineralization events. This is verified in subsequent in vitro mineralization assays in which r-n16.3 demonstrates its ability to form gel-like protein phases that organize and cluster nanometer-sized single-crystal calcite relative to protein-deficient controls. We conclude that the n16 nacre framework proteome creates a protein gel matrix that organizes and dimensionally limits mineral deposits. This process is highly relevant to the formation of ordered, nanometer-sized nacre tablets in the mollusk shell.


Subject(s)
Calcium Carbonate/metabolism , Nacre/chemistry , Pinctada/chemistry , Proteins/chemistry , Proteins/metabolism , Animals , Calcium/chemistry , Calcium/metabolism , Calcium Carbonate/chemistry , Kinetics , Magnetic Resonance Spectroscopy , Microscopy, Atomic Force , Protein Structure, Tertiary , Proteins/genetics , Spectrometry, Fluorescence , Tryptophan/chemistry
14.
Biochemistry ; 53(27): 4317-9, 2014 Jul 15.
Article in English | MEDLINE | ID: mdl-24977921

ABSTRACT

We report an interesting process whereby the formation of nanoparticle assemblies on and nanoporosities within calcite crystals is directed by an intrinsically disordered C-RING mollusk shell nacre protein, AP7. Under mineralization conditions, AP7 forms protein phases that direct the nucleation of ordered calcite nanoparticles via a repetitive protein phase deposition process onto calcite crystals. These organized nanoparticles are separated by gaps or spaces that become incorporated into the forming bulk crystal as nanoporosities. This is an unusual example of organized nanoparticle biosynthesis and mineral modification directed by a C-RING protein phase.


Subject(s)
Animal Shells/chemistry , Intrinsically Disordered Proteins/chemistry , Mollusca , Nacre/chemistry , Nanoparticles/chemistry , Animals , Calcification, Physiologic , Crystallization , Porosity
15.
Biopolymers ; 101(5): 525-35, 2014 May.
Article in English | MEDLINE | ID: mdl-24114119

ABSTRACT

Amelogenin, the major extracellular matrix protein of developing tooth enamel is intrinsically disordered. Through its interaction with other proteins and mineral, amelogenin assists enamel biomineralization by controlling the formation of highly organized enamel crystal arrays. We used circular dichroism (CD), dynamic light scattering (DLS), fluorescence, and NMR spectroscopy to investigate the folding propensity of recombinant porcine amelogenin rP172 following its interaction with SDS, at levels above critical micelle concentration. The rP172-SDS complex formation was confirmed by DLS, while an increase in the structure moiety of rP172 was noted through CD and fluorescence experiments. Fluorescence quenching analyses performed on several rP172 mutants where all but one Trp was replaced by Tyr at different sequence regions confirmed that the interaction of amelogenin with SDS micelles occurs via the N-terminal region close to Trp25 where helical segments can be detected by NMR. NMR spectroscopy and structural refinement calculations using CS-Rosetta modeling confirm that the highly conserved N-terminal domain is prone to form helical structure when bound to SDS micelles. Our findings reported here reveal interactions leading to significant changes in the secondary structure of rP172 upon treatment with SDS. These interactions may reflect the physiological relevance of the flexible nature of amelogenin and its sequence specific helical propensity that might enable it to structurally adapt with charged and potential targets such as cell surface, mineral, and other proteins during enamel biomineralization.


Subject(s)
Amelogenin/chemistry , Dental Enamel/chemistry , Micelles , Sodium Dodecyl Sulfate/chemistry , Amino Acid Sequence , Animals , Circular Dichroism , Molecular Sequence Data , Mutant Proteins/chemistry , Protein Structure, Secondary , Recombinant Proteins/chemistry , Spectrometry, Fluorescence , Sus scrofa , Thermodynamics , Tryptophan/metabolism
16.
Biomacromolecules ; 15(12): 4467-79, 2014 Dec 08.
Article in English | MEDLINE | ID: mdl-25380651

ABSTRACT

n16 is a framework protein family associated with biogenic mineral stabilization, thought to operate at three key interfaces in nacre: protein/ß-chitin, protein/protein, and protein/CaCO3. The N-terminal half of this protein, n16N, is known to be active in conferring this mineral stabilization and organization. While some details relating to the stabilization and organization of the mineral are known, the molecular mechanisms that underpin these processes are not yet established. To provide these molecular-scale details, here we explore current hypotheses regarding the possible subdomain organization of n16N, as related to these three interfaces in nacre, by combining outcomes of Replica Exchange with Solute Tempering molecular dynamics simulations with NMR experiments, to investigate the conformational ensemble of n16N in solution. We verify that n16N lacks a well-defined secondary structure, both with and without the presence of Ca(2+) ions, as identified from previous experiments. Our data support the presence of three different, functional subdomains within n16N. Our results reveal that tyrosine, chiefly located in the center of the peptide, plays a multifunctional role in stabilizing conformations of n16N, for intrapeptide and possibly interpeptide interactions. Complementary NMR spectroscopy data confirm the participation of tyrosine in this stabilization. The C-terminal half of n16N, lacking in tyrosine and highly charged, shows substantive conformational diversity and is proposed as a likely site for nucleation of calcium carbonate. Finally, dominant structures from our predicted conformational ensemble suggest the presentation of key residues thought to be critical to the selective binding to ß-chitin surfaces.


Subject(s)
Nacre/chemistry , Peptides/chemistry , Protein Conformation , Binding Sites , Calcium Carbonate/chemistry , Chitin/chemistry , Cluster Analysis , Intrinsically Disordered Proteins/chemistry , Magnetic Resonance Spectroscopy , Molecular Dynamics Simulation , Protein Structure, Secondary
17.
Biochemistry ; 52(33): 5696-703, 2013 Aug 20.
Article in English | MEDLINE | ID: mdl-23865482

ABSTRACT

The formation of the nacre pearl in marine invertebrates represents an on-demand production of mineralization in response to an irritant or parasite threat to the mantle organ. In the Japanese pearl oyster (Pinctada fucata), this process is mediated by a 12-member protein family known as PFMG (Pinctada fucata mantle gene). One of these proteins, PFGM1, has been implicated in modulating calcium carbonate crystal growth and has been reported to possess an EF-hand-like domain. In this report, we establish that the recombinant PFMG1 (rPFMG1) is an intrinsically disordered "imitator" EF-hand protein that increases the number of calcium carbonate mineral crystals that form relative to control scenarios and does not induce aragonite formation. This protein possesses a modified pseudo-EF-hand sequence at the C-terminal end which exhibits low homology (30-40%) to the pseudo-EF-hand mitochondrial SCaMCs buffering/solute transport proteins. This low sequence homology is the result of the inclusion of disorder-promoting amino acids and short amyloid-like aggregation-prone cross-ß-strand sequences within the putative PFMG1 pseudo-EF-hand sequence region. Similar to other nacre proteins, rPFMG1 oligomerizes to form amorphous, heterogeneously sized protein oligomers and films in vitro, and this process is enhanced by Ca(2+), which promotes the formation of aggregation-prone extended ß-strand structure within rPFMG1. From these results, we conclude that PFMG1 forms supramolecular assemblies that play an important role in amplifying the nucleation process that is crucial for coating or neutralizing invasive threats to the mantle organ.


Subject(s)
Calcification, Physiologic , Calcium Carbonate/metabolism , Pinctada/metabolism , Proteins/metabolism , Animals , Calcium Carbonate/chemistry , Circular Dichroism , Hydrogen-Ion Concentration , Microscopy, Atomic Force , Microscopy, Electron, Scanning , Nacre/chemistry , Nacre/metabolism , Pinctada/genetics , Pinctada/ultrastructure , Protein Multimerization , Proteins/chemistry , Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Recombinant Proteins/ultrastructure , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , X-Ray Diffraction
18.
Bioinformatics ; 28(24): 3182-5, 2012 Dec 15.
Article in English | MEDLINE | ID: mdl-23060620

ABSTRACT

MOTIVATION: The formation of aragonite mineral in the mollusk shell or pearl nacre requires the participation of a diverse set of proteins that form the mineralized extracellular matrix. Although self-assembly processes have been identified for several nacre proteins, these proteins do not contain known globular protein-protein binding domains. Thus, we hypothesize that other sequence features are responsible for nacre matrix protein-protein assembly processes and ultimately aragonite biosynthesis. RESULTS: Of 39 mollusk aragonite-associated protein sequences, 100% contain at least one region of intrinsic disorder or unfolding, with the highest percentages found in framework and pearl-associated proteins relative to the intracrystalline proteins. In some instances, these intrinsically disordered regions were identified as bind/fold sequences, and a limited number correlate with known biomineral-relevant sequences. Interestingly, 95% of the aragonite-associated protein sequences were found to contain at least one occurrence of amyloid-like or cross-ß strand aggregation-prone supersecondary motifs, and this correlates with known aggregation and aragonite formation functions in three experimentally tested protein sequences. Collectively, our findings indicate that aragonite-associated proteins have evolved signature sequence traits of intrinsic disorder and aggregation-prone regions that are important for their role(s) in matrix assembly and mineralization.


Subject(s)
Calcium Carbonate/chemistry , Extracellular Matrix Proteins/chemistry , Mollusca/chemistry , Animals , Calcification, Physiologic , Calcium Carbonate/metabolism , Mollusca/metabolism , Nacre/chemistry , Protein Conformation , Protein Interaction Domains and Motifs , Sequence Analysis, Protein
19.
J Biol Chem ; 286(40): 34643-53, 2011 Oct 07.
Article in English | MEDLINE | ID: mdl-21840988

ABSTRACT

Amelogenin self-assembles to form an extracellular protein matrix, which serves as a template for the continuously growing enamel apatite crystals. To gain further insight into the molecular mechanism of amelogenin nanosphere formation, we manipulated the interactions between amelogenin monomers by altering pH, temperature, and protein concentration to create isolated metastable amelogenin oligomers. Recombinant porcine amelogenins (rP172 and rP148) and three different mutants containing only a single tryptophan (Trp(161), Trp(45), and Trp(25)) were used. Dynamic light scattering and fluorescence studies demonstrated that oligomers were metastable and in constant equilibrium with monomers. Stable oligomers with an average hydrodynamic radius (R(H)) of 7.5 nm were observed at pH 5.5 between 4 and 10 mg · ml(-1). We did not find any evidence of a significant increase in folding upon self-association of the monomers into oligomers, indicating that they are disordered. Fluorescence experiments with single tryptophan amelogenins revealed that upon oligomerization the C terminus of amelogenin (around residue Trp(161)) is exposed at the surface of the oligomers, whereas the N-terminal region around Trp(25) and Trp(45) is involved in protein-protein interaction. The truncated rP148 formed similar but smaller oligomers, suggesting that the C terminus is not critical for amelogenin oligomerization. We propose a model for nanosphere formation via oligomers, and we predict that nanospheres will break up to form oligomers in mildly acidic environments via histidine protonation. We further suggest that oligomeric structures might be functional components during maturation of enamel apatite.


Subject(s)
Amelogenin/chemistry , Nanospheres/chemistry , Nanotechnology/methods , Animals , Anisotropy , Extracellular Matrix/metabolism , Hydrogen-Ion Concentration , Light , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Scattering, Radiation , Spectrometry, Fluorescence/methods , Swine , Tryptophan/chemistry
20.
Int J Mol Sci ; 13(3): 3949-3958, 2012.
Article in English | MEDLINE | ID: mdl-22489191

ABSTRACT

Cooperative effects of magnesium ions and acidic polypeptides originating from a family of proteins known as Asprich (mollusk Atrina rigida) were studied. In our previous studies, these two acidic polypeptides were found to be effective in controlling the morphology of the calcium carbonate mineral, the main inorganic constituent of prismatic layer of the mollusk shell. Since these Asprich sequences are believed to contain a putative magnesium binding domain, the morphology-controlling effects were further investigated with the addition of magnesium ions. The mineral morphology was dramatically changed by the combined influence of each polypeptides and the magnesium ions, substantiating the recognized importance of magnesium in the formation of calcium carbonate-based biominerals.


Subject(s)
Animal Shells/growth & development , Calcification, Physiologic/physiology , Calcium Carbonate/chemistry , Magnesium/chemistry , Mollusca/metabolism , Animal Shells/chemistry , Animal Shells/metabolism , Animals , Calcium Carbonate/metabolism , Magnesium/metabolism , Minerals , Proteins/metabolism
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