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1.
Zhongguo Zhong Yao Za Zhi ; 49(4): 894-901, 2024 Feb.
Article in Zh | MEDLINE | ID: mdl-38621896

ABSTRACT

Heart failure is characterized by high incidence and mortality rates, and the search for effective treatment strategies for heart failure and the improvement of clinical outcomes have always been important research directions. Imbalanced inflammation has been proven to be one of the critical pathological factors in heart failure, positively correlated with adverse events such as impaired cardiac function and myocardial fibrosis. In recent years, studies have confirmed that the activation of the NOD-like receptor thermal protein domain-associated protein 3(NLRP3) inflammasome plays a common regulatory role in the inflammation imbalance induced by various factors in heart failure. Moreover, certain traditional Chinese medicine(TCM) and active components can significantly inhibit the activation of the NLRP3 inflammasome, thereby improving heart failure. This article first overviewed the basic information about the NLRP3 inflammasome, summarized the regulatory mechanisms of the NLRP3 inflammasome in heart failure induced by various factors, introduced recent research progress on TCM and active components that inhibited the NLRP3 inflammasome to improve heart failure, aiming to provide references for innovative drug research in the field of integrated Chinese and western medicine for the prevention and treatment of heart failure.


Subject(s)
Heart Failure , Inflammasomes , Humans , Inflammasomes/metabolism , NLR Family, Pyrin Domain-Containing 3 Protein/genetics , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , Medicine, Chinese Traditional , Heart Failure/drug therapy , Inflammation
2.
Hum Mol Genet ; 30(R2): R285-R295, 2021 10 01.
Article in English | MEDLINE | ID: mdl-34387327

ABSTRACT

The gene content of the X and Y chromosomes has dramatically diverged during evolution. The ensuing dosage imbalance within the genome of males and females has led to unique chromosome-wide regulatory mechanisms with significant and sex-specific impacts on X-linked gene expression. X inactivation or silencing of most genes on one X chromosome chosen at random in females profoundly affects the manifestation of X-linked diseases, as males inherit a single maternal allele, while females express maternal and paternal alleles in a mosaic manner. An additional complication is the existence of genes that escape X inactivation and thus are ubiquitously expressed from both alleles in females. The mosaic nature of X-linked gene expression and the potential for escape can vary between individuals, tissues, cell types and stages of life. Our understanding of the specialized nature of X-linked genes and of the multilayer epigenetic regulation that influence their expression throughout the organism has been helped by molecular studies conducted by tissue-specific and single-cell-specific approaches. In turn, the definition of molecular events that control X silencing has helped develop new approaches for the treatment of some X-linked disorders. This review focuses on the peculiarities of the X chromosome genetic content and epigenetic regulation in shaping the manifestation of congenital and acquired X-linked disorders in a sex-specific manner.


Subject(s)
Genes, X-Linked , Genetic Association Studies , Genetic Predisposition to Disease , X Chromosome Inactivation , Alleles , Aneuploidy , Chromosomes, Human, X , Female , Gene Dosage , Gene Expression Regulation , Humans , Male , Organ Specificity/genetics
3.
Mediators Inflamm ; 2023: 5133505, 2023.
Article in English | MEDLINE | ID: mdl-37840694

ABSTRACT

Sepsis is one of the most severe complications and causes of mortality in the clinic. It remains a great challenge with no effective treatment for clinicians worldwide. Inhibiting the release of proinflammatory cytokines during sepsis is considered as an important strategy for treating sepsis and improving survival. In the present study, we have observed the effect of dimethyl fumarate (DMF) on lipopolysaccharide- (LPS-) induced sepsis and investigated the possible mechanism. By screening a subset of the Johns Hopkins Drug Library, we identified DMF as a novel inhibitor of nitric oxide synthesis in LPS-stimulated RAW264.7 cells, suggesting that DMF could be a potential drug to treat sepsis. To further characterize the effect of DMF on LPS signaling, TNF-α, MCP-1, G-CMF, and IL-6 expression levels were determined by using cytokine array panels. In addition, an endotoxemia model with C57BL/6 mice was used to assess the in vivo efficacy of DMF on sepsis. The survival rate was assessed, and HE staining was performed to investigate histopathological damage to the organs. DMF was found to increase the survival of septic mice by 50% and attenuate organ damage, consistent with the reduction in IL-10, IL-6, and TNF-α (inflammatory cytokines) in serum. In vitro experiments revealed DMF's inhibitory effect on the phosphorylation of p65, IκB, and IKK, suggesting that the primary inhibitory effects of DMF can be attributed, at least in part, to the inhibition of phosphorylation of IκBα, IKK as well as nuclear factor-κB (NF-κB) upon LPS stimulation. The findings demonstrate that DMF dramatically inhibits NO and proinflammatory cytokine production in response to LPS and improves survival in septic mice, raising the possibility that DMF has the potential to be repurposed as a new treatment of sepsis.


Subject(s)
NF-kappa B , Sepsis , Mice , Animals , NF-kappa B/metabolism , Lipopolysaccharides/toxicity , Dimethyl Fumarate/pharmacology , Dimethyl Fumarate/therapeutic use , Tumor Necrosis Factor-alpha/metabolism , Interleukin-6/metabolism , Mice, Inbred C57BL , Sepsis/chemically induced , Sepsis/drug therapy , Sepsis/metabolism , Cytokines/metabolism
4.
Sensors (Basel) ; 23(15)2023 Jul 28.
Article in English | MEDLINE | ID: mdl-37571535

ABSTRACT

Six-generation (6G) networks will contain a higher density of users, base stations, and communication equipment, which poses a significant challenge to secure communications and collaborations due to the complex network and environment as well as the number of resource-constraint devices used. Trust evaluation is the basis for secure communications and collaborations, providing an access criterion for interconnecting different nodes. Without a trust evaluation mechanism, the risk of cyberattacks on 6G networks will be greatly increased, which will eventually lead to the failure of network collaboration. For the sake of performing a comprehensive evaluation of nodes, this paper proposes a novel multiple role fusion trust evaluation framework that integrates multiple role fusion trust calculation and blockchain-based trust management. In order to take advantage of fused trust values for trust prediction, a neural network fitting method is utilized in the paper. This work further optimizes the traditional trust management framework and utilizes the optimized model for node trust prediction to better increase the security of communication systems. The results show that multiple role fusion has better stability than a single role evaluation network and better performance in anomaly detection and evaluation accuracy.

5.
Int J Mol Sci ; 24(22)2023 Nov 17.
Article in English | MEDLINE | ID: mdl-38003657

ABSTRACT

The protein disulfide isomerase (PDI) family is a group of thioredoxin endoplasmic reticulum (ER)-resident enzymes and molecular chaperones that play crucial roles in the correct folding of proteins. PDIs are upregulated in multiple cancer types and are considered a novel target for cancer therapy. In this study, we found that a potent pan-PDI inhibitor, E64FC26, significantly decreased the proliferation of pancreatic ductal adenocarcinoma (PDAC) cells. As expected, E64FC26 treatment increased ER stress and the unfolded protein response (UPR), as evidenced by upregulation of glucose-regulated protein, 78-kDa (GRP78), phosphorylated (p)-PKR-like ER kinase (PERK), and p-eukaryotic initiation factor 2α (eIF2α). Persistent ER stress was found to lead to apoptosis, ferroptosis, and autophagy, all of which are dependent on lysosomal functions. First, there was little cleaved caspase-3 in E64FC26-treated cells according to Western blotting, but a higher dose of E64FC26 was needed to induce caspase activity. Then, E64FC26-induced cell death could be reversed by adding the iron chelator, deferoxamine, and the reactive oxygen species scavengers, ferrostatin-1 and N-acetylcysteine. Furthermore, the autophagosome-specific marker, light chain 3B (LC3B)-II, increased, but the autolysosome marker, sequestosome 1 (SQSTM1)/p62, was not degraded in E64FC26-treated cells. Using the FUW mCherry-LC3 plasmid and acridine orange staining, we also discovered a lower number of acidic vesicles, such as autolysosomes and mature lysosomes, in E64FC26-treated cells. Finally, E64FC26 treatment increased the cathepsin L precursor (pre-CTSL) but decreased mature CTSL expression according to Western blotting, indicating a defective lysosome. These results suggested that the PDI inhibitor, E64FC26, might initially impede proper folding of proteins, and then induce ER stress and disrupt proteostasis, subsequently leading to lysosomal defects. Due to defective lysosomes, the extents of apoptosis and ferroptosis were limited, and fusion with autophagosomes was blocked in E64FC26-treated cells. Blockade of autolysosomal formation further led to the autophagic cell death of PDAC cells.


Subject(s)
Carcinoma, Pancreatic Ductal , Pancreatic Neoplasms , Humans , Protein Disulfide-Isomerases , Proteostasis , Endoplasmic Reticulum Stress , Apoptosis , Autophagy , Carcinoma, Pancreatic Ductal/drug therapy , Pancreatic Neoplasms
6.
Zhongguo Zhong Yao Za Zhi ; 48(17): 4747-4760, 2023 Sep.
Article in Zh | MEDLINE | ID: mdl-37802814

ABSTRACT

In this study, untargeted metabolomics was conducted using the liquid chromatography-tandem mass spectrometry(LC-MS/MS) technique to analyze the potential biomarkers in the plasma of mice with heart failure with preserved ejection fraction(HFpEF) induced by a high-fat diet(HFD) and nitric oxide synthase inhibitor(Nω-nitro-L-arginine methyl ester hydrochloride, L-NAME) and explore the pharmacological effects and mechanism of Jiming Powder in improving HFpEF. Male C57BL/6N mice aged eight weeks were randomly assigned to a control group, a model group, an empagliflozin(10 mg·kg~(-1)·d~(-1)) group, and high-and low-dose Jiming Powder(14.3 and 7.15 g·kg~(-1)·d~(-1)) groups. Mice in the control group were fed on a low-fat diet, and mice in the model group and groups with drug intervention were fed on a high-fat diet. All mice had free access to water, with water in the model group and Jiming Powder groups being supplemented with L-NAME(0.5 g·L~(-1)). Drugs were administered on the first day of modeling, and 15 weeks later, blood pressure and cardiac function of the mice in each group were measured. Heart tissues were collected for hematoxylin-eosin(HE) staining to observe pathological changes and Masson's staining to observe myocardial collagen deposition. Untargeted metabolomics analysis was performed on the plasma collected from mice in each group, and metabolic pathway analysis was conducted using MetaboAnalyst 5.0. The results showed that the blood pressure was significantly lower and the myocardial concentric hypertrophy and left ventricular diastolic dysfunction were significantly improved in both the high-dose and low-dose Jiming Powder groups as compared with those in the model group. HE and Masson staining showed that both high-dose and low-dose Jiming Powder significantly alleviated myocardial fibrosis. In the metabolomics experiment, 23 potential biomarkers were identified and eight strongly correlated metabolic pathways were enriched, including linoleic acid metabolism, histidine metabolism, alpha-linolenic acid metabolism, glycerophospholipid metabolism, purine metabolism, porphyrin and chlorophyll metabolism, arachidonic acid metabolism, and pyrimidine metabolism. The study confirmed the pharmacological effects of Jiming Powder in lowering blood pressure and ameliorating HFpEF and revealed the mechanism of Jiming Powder using the metabolomics technique, providing experimental evidence for the clinical application of Jiming Powder in treating HFpEF and a new perspective for advancing and developing TCM therapy for HFpEF.


Subject(s)
Heart Failure , Male , Mice , Animals , Heart Failure/drug therapy , Heart Failure/metabolism , Powders , Stroke Volume/physiology , Chromatography, Liquid , NG-Nitroarginine Methyl Ester/therapeutic use , Mice, Inbred C57BL , Tandem Mass Spectrometry , Metabolomics , Biomarkers , Water
7.
Zhongguo Zhong Yao Za Zhi ; 48(21): 5838-5850, 2023 Nov.
Article in Zh | MEDLINE | ID: mdl-38114180

ABSTRACT

Jiming Powder is a traditional ancient prescription with good therapeutic effect in the treatment of heart failure, but its mechanism lacks further exploration. In this study, a mouse model of coronary artery ligation was used to evaluate the effect and mechanism of Jiming Powder on myocardial fibrosis in mice with myocardial infarction. The study constructed a mouse model of heart failure after myocardial infarction using the method of left anterior descending coronary artery ligation. The efficacy of Jiming Powder was evaluated from multiple angles, including ultrasound imaging, hematoxylin-eosin(HE) staining, Masson staining, Sirius Red staining, and serum myocardial enzyme spectrum detection. Western blot analysis was performed to detect key proteins involved in ventricular remodeling, including transforming growth factor-ß1(TGF-ß1), α-smooth muscle actin(α-SMA), wingless-type MMTV integration site family member 3a(Wnt3a), ß-catenin, matrix metallopeptidase 2(MMP2), matrix metallopeptidase 3(MMP3), TIMP metallopeptidase inhibitor 1(TIMP1), and TIMP metallopeptidase inhibitor 2(TIMP2). The results showed that compared with the model group, the high and low-dose Jiming Powder significantly reduced the left ventricular internal diameter in systole(LVID;s) and diastole(LVID;d), increased the left ventricular ejection fraction(LVEF) and left ventricular fractional shortening(LVFS), effectively improved cardiac function in mice after myocardial infarction, and effectively reduced the levels of myocardial injury markers such as creatine kinase(CK), creatine kinase isoenzyme(CK-MB), and lactic dehydrogenase(LDH), thus protecting ischemic myocardium. HE staining showed that Jiming Powder could attenuate myocardial inflammatory cell infiltration after myocardial infarction. Masson and Sirius Red staining demonstrated that Jiming Powder effectively inhibited myocardial fibrosis, reduced the collagen Ⅰ/Ⅲ ratio in myocardial tissues, and improved collagen remodeling after myocardial infarction. Western blot results showed that Jiming Powder reduced the expression of TGF-ß1, α-SMA, Wnt3a, and ß-catenin, decreased the levels of MMP2, MMP3, and TIMP2, and increased the level of TIMP1, suggesting its role in inhibiting cardiac fibroblast transformation, reducing extracellular matrix metabolism in myocardial cells, and lowering collagen Ⅰ and α-SMA content, thus exerting an anti-myocardial fibrosis effect after myocardial infarction. This study revealed the role of Jiming Powder in improving ventricular remodeling and treating myocardial infarction, laying the foundation for further research on the pharmacological effect of Jiming Powder.


Subject(s)
Heart Failure , Myocardial Infarction , Mice , Animals , Transforming Growth Factor beta1/metabolism , Matrix Metalloproteinase 2/metabolism , beta Catenin/metabolism , Matrix Metalloproteinase 3/metabolism , Matrix Metalloproteinase 3/therapeutic use , Powders , Ventricular Remodeling , Stroke Volume , Ventricular Function, Left , Myocardial Infarction/drug therapy , Myocardium/pathology , Heart Failure/metabolism , Collagen/metabolism , Creatine Kinase , Fibrosis
8.
BMC Med ; 20(1): 145, 2022 04 04.
Article in English | MEDLINE | ID: mdl-35369873

ABSTRACT

BACKGROUND: Dietary phytoestrogens have been suggested to influence puberty timing, a critical stage for well-being in adulthood. We hypothesized that childhood soy intake might prospectively influence puberty timing and that dietary fibre and the key isoflavone metabolite equol might play roles. METHODS: Cox proportional hazard regression models were performed in 4781 children (2152 girls and 2629 boys) aged 6-8 years old from the Chinese Adolescent Cohort Study for whom a food frequency questionnaire at baseline and information about potential confounders were available. Anthropometry and pubertal status including age at Tanner stage 2 for breast development (B2) or age at the initiation of gonadal growth (G2), and age at menarche (M) or voice break (VB) were assessed annually. Equol excretion was determined by urine samples from 1311 participants. RESULTS: Among girls and boys, higher soy intake was associated with later puberty timing (hazard ratio (HR)-B2: 0.88 (95% CI, 0.80-0.96), p=0.02; HR-M, 0.87 (0.77-0.94), p=0.01; HR-G2, 0.91 (0.82-0.98), p=0.013; HR-VB, 0.90 (0.82-0.9), p=0.02), independent of prepubertal body fatness and fibre intake. These associations were more pronounced among children with a high urinary equol level (pfor-interaction ≤ 0.04) or with a high cereal fibre intake (pfor-interaction ≤ 0.06). Intake of dietary fibre or its subtype was not prospectively associated with puberty onset after adjusting for dietary soy intake (p≥0.06). CONCLUSION: Higher childhood soy intake is prospectively associated with later puberty timing in both Chinese girls and boys, independent of prepubertal body fatness, and the association is particularly pronounced among individuals with a higher urinary equol level.


Subject(s)
Diet , Puberty , Adolescent , Adult , Child , China/epidemiology , Cohort Studies , Female , Humans , Male , Menarche , Puberty/urine
9.
Dig Dis Sci ; 67(3): 936-946, 2022 03.
Article in English | MEDLINE | ID: mdl-33782806

ABSTRACT

OBJECTIVE: To explore how lncRNA SNHG14 modulates the biological features of hepatocellular carcinoma (HCC) cells by regulating SOX9 via mediating miR-206. METHODS: HCC tissues were collected to perform the quantitative reverse transcriptase polymerase chain reaction to determine the expressions of SNHG14, miR-206, and SOX9. HCC cell line SMCC7721 was selected for co-transfection by si-SNHG14/miR-206 inhibitor/si-SOX9, followed by the measurement of cell proliferation using Cell Count Kit-8 (CCK-8) assay and clone formation assay. The migration and invasion were evaluated by wound healing test and Transwell assay. The apoptotic rate was determined by flow cytometry. Levels of the apoptosis-related proteins were measured through Western blotting. RESULTS: SNHG14 and SOX9 were up-regulated in HCC tumor tissues compared with adjacent normal tissues, with decreased miR-206 expression. Moreover, SNHG14 expression was significantly associated with the TNM stage, lymphatic metastasis, and histological differentiation of HCC patients. Besides, inverse correlations between SNHG14 and miR-206, as well as between miR-206 and SOX9, were noted. The dual luciferase reporter gene assay, RIP, and RNA pull-down experiments also revealed the targeting relationship between SNHG14 and miR-206 or between miR-206 and SOX9. Silencing SNHG14 and SOX9 inhibited the proliferation, invasion, and migration of HCC cells, with increased apoptosis, which was all abolished by silencing miR-206. CONCLUSION: Inhibition of SNHG14 suppresses SOX9 by up-regulating miR-206, to further inhibit the proliferation, migration, and invasion of HCC cells with the promoted apoptosis, which is a novel target for the treatment of HCC.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , MicroRNAs , RNA, Long Noncoding , Apoptosis , Carcinoma, Hepatocellular/pathology , Cell Line , Cell Line, Tumor , Cell Movement , Cell Proliferation , Gene Expression Regulation, Neoplastic , Humans , Liver Neoplasms/pathology , MicroRNAs/genetics , MicroRNAs/metabolism , RNA, Long Noncoding/genetics , RNA, Long Noncoding/metabolism , SOX9 Transcription Factor/genetics , SOX9 Transcription Factor/metabolism
10.
Chaos ; 32(10): 103131, 2022 Oct.
Article in English | MEDLINE | ID: mdl-36319287

ABSTRACT

With the popularization of social network analysis, information diffusion models have a wide range of applications, such as viral marketing, publishing predictions, and social recommendations. The emergence of multiplex social networks has greatly enriched our daily life; meanwhile, identifying influential edges remains a significant challenge. The key problem lies that the edges of the same nodes are heterogeneous at different layers of the network. To solve this problem, we first develop a general information diffusion model based on the adjacency tensor for the multiplex network and show that the n-mode singular value can control the level of information diffusion. Then, to explain the suppression of information diffusion through edge deletion, efficient edge eigenvector centrality is proposed to identify the influence of heterogeneous edges. The numerical results from synthetic networks and real-world multiplex networks show that the proposed strategy outperforms some existing edge centrality measures. We devise an experimental strategy to demonstrate that influential heterogeneous edges can be successfully identified by considering the network layer centrality, and the deletion of top edges can significantly reduce the diffusion range of information across multiplex networks.


Subject(s)
Social Networking
11.
Nucleic Acids Res ; 45(17): 9917-9930, 2017 Sep 29.
Article in English | MEDLINE | ID: mdl-28973435

ABSTRACT

The structure of the nucleosome, the basic building block of the chromatin fiber, plays a key role in epigenetic regulatory processes that affect DNA-dependent processes in the context of chromatin. Members of the HMGN family of proteins bind specifically to nucleosomes and affect chromatin structure and function, including transcription and DNA repair. To better understand the mechanisms by which HMGN 1 and 2 alter chromatin, we analyzed their effect on the organization of histone tails and linker histone H1 in nucleosomes. We find that HMGNs counteract linker histone (H1)-dependent stabilization of higher order 'tertiary' chromatin structures but do not alter the intrinsic ability of nucleosome arrays to undergo salt-induced compaction and self-association. Surprisingly, HMGNs do not displace H1s from nucleosomes; rather these proteins bind nucleosomes simultaneously with H1s without disturbing specific contacts between the H1 globular domain and nucleosomal DNA. However, HMGNs do alter the nucleosome-dependent condensation of the linker histone C-terminal domain, which is critical for stabilizing higher-order chromatin structures. Moreover, HMGNs affect the interactions of the core histone tail domains with nucleosomal DNA, redirecting the tails to more interior positions within the nucleosome. Our studies provide new insights into the molecular mechanisms whereby HMGNs affect chromatin structure.


Subject(s)
DNA/chemistry , HMGN1 Protein/chemistry , HMGN2 Protein/chemistry , Histones/chemistry , Nucleosomes/chemistry , Amino Acid Sequence , Animals , Binding Sites , Chickens , DNA/genetics , DNA/metabolism , Gene Expression , HMGN1 Protein/genetics , HMGN1 Protein/metabolism , HMGN2 Protein/genetics , HMGN2 Protein/metabolism , Histones/genetics , Histones/metabolism , Humans , Nucleic Acid Conformation , Nucleosomes/metabolism , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Domains , Protein Interaction Domains and Motifs , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Xenopus laevis
12.
Nucleic Acids Res ; 44(19): 9131-9141, 2016 Nov 02.
Article in English | MEDLINE | ID: mdl-27365050

ABSTRACT

Linker histones are an integral component of chromatin but how these proteins promote assembly of chromatin fibers and higher order structures and regulate gene expression remains an open question. Using Förster resonance energy transfer (FRET) approaches we find that association of a linker histone with oligonucleosomal arrays induces condensation of the intrinsically disordered H1 CTD in a manner consistent with adoption of a defined fold or ensemble of folds in the bound state. However, H1 CTD structure when bound to nucleosomes in arrays is distinct from that induced upon H1 association with mononucleosomes or bare double stranded DNA. Moreover, the H1 CTD becomes more condensed upon condensation of extended nucleosome arrays to the contacting zig-zag form found in moderate salts, but does not detectably change during folding to fully compacted chromatin fibers. We provide evidence that linker DNA conformation is a key determinant of H1 CTD structure and that constraints imposed by neighboring nucleosomes cause linker DNAs to adopt distinct trajectories in oligonucleosomes compared to H1-bound mononucleosomes. Finally, inter-molecular FRET between H1s within fully condensed nucleosome arrays suggests a regular spatial arrangement for the H1 CTD within the 30 nm chromatin fiber.


Subject(s)
Chromatin/chemistry , DNA/chemistry , Histones/chemistry , Nucleic Acid Conformation , Protein Conformation , Animals , Chromatin/metabolism , DNA/metabolism , Fluorescence Resonance Energy Transfer , Histones/genetics , Histones/metabolism , Nucleosomes/chemistry , Nucleosomes/genetics , Nucleosomes/metabolism , Protein Binding , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
13.
Bioorg Med Chem Lett ; 27(18): 4294-4297, 2017 09 15.
Article in English | MEDLINE | ID: mdl-28843708

ABSTRACT

Various pyridinium-functionalized carbazole derivatives were constructed by coupling the key fragments of carbazole skeleton and pyridinium nucleus in a single molecular architecture. Antibacterial bioassays revealed that some of the title compounds displayed impressive bioactivities against plant pathogens such as Xanthomonas oryzae pv. oryzae, Ralstonia solanacearum, and Xanthomonas axonopodis pv. citri with minimal EC50 values of up to 0.4, 0.3, and 0.3mg/L, respectively. These bioactivities were achieved by systematically tuning and optimizing bridging linker, alkyl length of the tailor, and substituents on the carbazole scaffold. Compared with the bioactivity of the lead compound (AP-10), antibacterial efficacy dramatically increased by approximately 13-, 104- and 21-fold. This finding suggested that these compounds can serve as new lead compounds in research on antibacterial chemotherapy.


Subject(s)
Anti-Bacterial Agents/pharmacology , Carbazoles/pharmacology , Pyridinium Compounds/pharmacology , Ralstonia solanacearum/drug effects , Xanthomonas/drug effects , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Carbazoles/chemical synthesis , Carbazoles/chemistry , Dose-Response Relationship, Drug , Microbial Sensitivity Tests , Molecular Structure , Pyridinium Compounds/chemistry , Structure-Activity Relationship
14.
Biochemistry ; 55(14): 2069-77, 2016 Apr 12.
Article in English | MEDLINE | ID: mdl-27010485

ABSTRACT

Linker histone H1 regulates chromatin structure and gene expression. Investigating the dynamics and stoichiometry of binding of H1 to DNA and the nucleosome is crucial to elucidating its functions. Because of the abundant positive charges and the strong self-affinity of H1, quantitative in vitro studies of its binding to DNA and the nucleosome have generated results that vary widely and, therefore, should be interpreted in a system specific manner. We sought to overcome this limitation by developing a specially passivated microscope slide surface to monitor binding of H1 to DNA and the nucleosome at a single-molecule level. According to our measurements, the stoichiometry of binding of H1 to DNA and the nucleosome is very heterogeneous with a wide distribution whose averages are in reasonable agreement with previously published values. Our study also revealed that H1 does not dissociate from DNA or the nucleosome on a time scale of tens of minutes. We found that histone chaperone Nap1 readily dissociates H1 from DNA and superstoichiometrically bound H1 from the nucleosome, supporting a hypothesis whereby histone chaperones contribute to the regulation of the H1 profile in chromatin.


Subject(s)
DNA/chemistry , Histones/chemistry , Models, Molecular , Nucleosome Assembly Protein 1/chemistry , Nucleosomes/chemistry , Xenopus Proteins/chemistry , Amino Acid Substitution , Animals , Binding, Competitive , DNA/metabolism , Histones/genetics , Histones/metabolism , Immobilized Proteins/chemistry , Immobilized Proteins/genetics , Immobilized Proteins/metabolism , Kinetics , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , Liposomes , Mutation , Nucleic Acid Conformation , Nucleosome Assembly Protein 1/genetics , Nucleosome Assembly Protein 1/metabolism , Nucleosomes/metabolism , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Conformation , Protein Multimerization , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Xenopus Proteins/genetics , Xenopus Proteins/metabolism , Xenopus laevis
15.
Ecotoxicol Environ Saf ; 130: 234-9, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27131747

ABSTRACT

Horseradish peroxidase shows potential biological and environmental applications on the removal of phenolic compounds. In the present study, the HRP-immobilized beads were synthesized to detect the efficiency of the removal of phenol at optimum pH and H2O2 concentration. Comparative in vitro cytotoxicity of phenol/treated solutions were evaluated in HeLa, HepG2 and mcf-7 cells by using MTT method along with flow cytometry study for cell viability and cell cycle distributions. The results showed that the toxicity of phenol solutions were greatly reduced after treated by HRP-immobilized beads, and phenol could lead to deactivate of cells in the S phase and preventing them from going into the G2/M checkpoint. In addition, molecular docking study showed that phenol was a valid inhibitor for the cyclin E in the cell cycle and cell metabolism. Thereby, we established a suitable strategy with promising application for efficient harmless removal of phenol, which significantly decreased the cytotoxic impacts of phenol.


Subject(s)
Enzymes, Immobilized/chemistry , Horseradish Peroxidase/chemistry , Phenol/chemistry , Phenol/toxicity , Cell Cycle Checkpoints/drug effects , Cell Survival/drug effects , Cyclin E/antagonists & inhibitors , Ecotoxicology , HeLa Cells , Hep G2 Cells , Humans , Hydrogen Peroxide/chemistry , MCF-7 Cells , Molecular Docking Simulation , Oxidation-Reduction , Water Pollutants, Chemical
16.
Microvasc Res ; 98: 88-93, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25636742

ABSTRACT

The effects of long-term rosuvastatin treatment on the regulation of cytochrome P450 (CYP) 4A1 expression and vascular homeostasis of spontaneously hypertensive rat (SHR) are still unknown. In this study SHRs were randomly divided into three groups (n=10 per group): SHR group, H-Rv group (rosuvastatin 2.5 mg·kg(-1)·d(-1)), L-Rv group (rosuvastatin 0.5 mg·kg(-1)·d(-1)), and 10 male Wistar-Kyoto (WKY) rats in the control group (WKY group). All rats were treated with rosuvastatin for 12 weeks. The systolic blood pressure (SBP), left ventricle weight index (LVWI) and plasma lipids were measured during or after treatment. The expression of CYP4A1 mRNA and protein in different tissues was detected by real-time PCR and Western blot. In the heart, kidney and aorta, the CYP4A1 expressions were down-regulated at both mRNA and protein levels in rosuvastatin-treated groups compared with the untreated SHR group (P<0.05 or P<0.01), and high-dose rosuvastatin exerted a stronger down-regulatory effect. The increasing trend of blood pressure was markedly blunted in the rosuvastatin-treated groups versus the untreated SHR group, and a stronger effect was observed in high-dose group (P<0.05 and P<0.01 at different time points). LVWI, an indicator of ventricle hypertrophy, was improved in the high-dose group compared with the untreated SHR group (P<0.05). The plasma concentrations of TC, TG and LDL-C in three SHR groups (high-dose, low-dose and untreated group) were all significantly lower than those of WKY group (P<0.05 or P<0.01), which seemed unrelated to the treatment of rosuvastatin. These findings suggested that hypertension in SHRs was possibly associated with CYP4A1 overexpression, and the effects of rosuvastatin on blood pressure and ventricle hypertrophy were potentially correlated with CYP4A1 and its metabolite other than lipid profiles. Multiple mechanisms are likely involved in the beneficial effects of statins with respect to the regulation of CYP4A1.


Subject(s)
Blood Pressure/drug effects , Cytochrome P-450 Enzyme System/metabolism , Rosuvastatin Calcium/therapeutic use , Animals , Cytochrome P450 Family 4 , Gene Expression Regulation , Heart Ventricles/pathology , Homeostasis , Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use , Kidney/metabolism , Male , Myocardium/metabolism , RNA, Messenger/metabolism , Rats , Rats, Inbred SHR , Rats, Inbred WKY , Systole , Tissue Distribution
17.
Clin Sci (Lond) ; 129(7): 575-88, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25994236

ABSTRACT

The homing ability and secretory function of mesenchymal stem cells (MSCs) are key factors that influence cell involvement in wound repair. These factors are controlled by multilayer regulatory circuitry, including adhesion molecules, core transcription factors (TFs) and certain other regulators. However, the role of adhesion molecules in this regulatory circuitry and their underlying mechanism remain undefined. In the present paper, we demonstrate that an adhesion molecule, junction adhesion molecule A (JAM-A), may function as a key promoter molecule to regulate skin wound healing by MSCs. In in vivo experiments, we show that JAM-A up-regulation promoted both MSC homing to full-thickness skin wounds and wound healing-related cytokine secretion by MSCs. In vitro experiments also showed that JAM-A promoted MSC proliferation and migration by activating T-cell lymphoma invasion and metastasis 1 (Tiam1). We suggest that JAM-A up-regulation can increase the proliferation, cytokine secretion and wound-homing ability of MSCs, thus accelerating the repair rate of full-thickness skin defects. These results may provide insights into a novel and potentially effective approach to improve the efficacy of MSC treatment.


Subject(s)
Cell Adhesion Molecules/metabolism , Mesenchymal Stem Cells/cytology , Receptors, Cell Surface/metabolism , Wound Healing , Animals , Cell Adhesion , Cell Differentiation , Cell Movement , Chemotaxis , Coculture Techniques , Epidermis/metabolism , Humans , Lentivirus/genetics , Leukocytes, Mononuclear/cytology , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Platelet Endothelial Cell Adhesion Molecule-1/metabolism , Promoter Regions, Genetic , Transcription Factors/metabolism
18.
Nucleic Acids Res ; 40(4): 1475-84, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22021384

ABSTRACT

We previously documented condensation of the H1 CTD consistent with adoption of a defined structure upon nucleosome binding using a bulk FRET assay, supporting proposals that the CTD behaves as an intrinsically disordered domain. In the present study, by determining the distances between two different pairs of sites in the C-terminal domain of full length H1 by FRET, we confirm that nucleosome binding directs folding of the disordered H1 C-terminal domain and provide additional distance constraints for the condensed state. In contrast to nucleosomes, FRET observed upon H1 binding to naked DNA fragments includes both intra- and inter-molecular resonance energy transfer. By eliminating inter-molecular transfer, we find that CTD condensation induced upon H1-binding naked DNA is distinct from that induced by nucleosomes. Moreover, analysis of fluorescence quenching indicates that H1 residues at either end of the CTD experience distinct environments when bound to nucleosomes, and suggest that the penultimate residue in the CTD (K195) is juxtaposed between the two linker DNA helices, proposed to form a stem structure in the H1-bound nucleosome.


Subject(s)
DNA/metabolism , Histones/chemistry , Nucleosomes/metabolism , Animals , Fluorescence Resonance Energy Transfer , Histones/metabolism , Protein Folding , Protein Structure, Tertiary , Xenopus laevis
19.
Heliyon ; 10(7): e27728, 2024 Apr 15.
Article in English | MEDLINE | ID: mdl-38560202

ABSTRACT

We measure the green technology innovation efficiency of 288 cities in China from static and dynamic dimensions using the super-SBM model and Malmquist-Luenberger index, and employ "Difference in Difference" (DID) model to evaluate the impact of FTZs construction on green technology innovation efficiency using panel data from 288 prefecture-level cities from 2008 to 2020. The findings show: (1) The FTZs significantly improve green technology innovation efficiency. The decomposition indexes promote the green technology innovation efficiency more from the dynamic productivity dimension (GTFP) functioning on technological advancement. (2) The FTZs can boost the efficiency of green technology innovation through industrial agglomeration, digital economy, and government financial support; (3) The effect of FTZs on the efficiency of green technology innovation differs based on the size and location of the city. Green technology innovation will reach maximum potential when promoting FTZ policy in less developed central, western, and interior regions. This study addresses whether FTZ policies can genuinely support regional green innovation and policy insights to expand opening up and enhance high-quality economic growth.

20.
Adv Sci (Weinh) ; 11(1): e2305273, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37997512

ABSTRACT

Trauma and its associated complications, including dysregulated inflammatory responses, severe infection, and disseminated intravascular coagulation (DIC), continue to pose lethal threats worldwide. Following injury, cell-free nucleic acids (cfNAs), categorized as damage-associated molecular patterns (DAMPs), are released from dying or dead cells, triggering local and systemic inflammatory responses and coagulation abnormalities that worsen disease progression. Harnessing cfNA scavenging strategies with biomaterials has emerged as a promising approach for treating posttrauma systemic inflammation. In this study, the effectiveness of cationic hyperbranched polyaminoglycosides derived from tobramycin (HPT) and disulfide-included HPT (ss-HPT) in scavenging cfNAs to mitigate posttrauma inflammation and hypercoagulation is investigated. Both cationic polymers demonstrate the ability to suppress DAMP-induced toll-like receptor (TLR) activation, inflammatory cytokine secretion, and hypercoagulation by efficiently scavenging cfNAs. Additionally, HPT and ss-HPT exhibit potent antibacterial efficacy attributed to the presence of tobramycin in their chemical composition. Furthermore, HPT and ss-HPT exhibit favorable modulatory effects on inflammation and therapeutic outcomes in a cecal ligation puncture (CLP) mouse abdominal trauma model. Notably, in vivo studies reveal that ss-HPT displayed high accumulation and retention in injured organs of traumatized mice while maintaining a higher biodegradation rate in healthy mice, contrasting with findings for HPT. Thus, functionalized ss-HPT, a bioreducible polyaminoglycoside, holds promise as an effective option to enhance therapeutic outcomes for trauma patients by alleviating posttrauma inflammation and coagulation complications.


Subject(s)
Blood Coagulation , Inflammation , Humans , Mice , Animals , Disease Models, Animal , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Tobramycin/pharmacology , Tobramycin/therapeutic use
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