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1.
PLoS Pathog ; 16(11): e1008932, 2020 11.
Article in English | MEDLINE | ID: mdl-33141865

ABSTRACT

Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T. brucei, due to partial deletion within the locus containing three tandem copies of the CBP genes. T. congolense parasites, which possess a larger array of related CBPs, also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T. brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T. brucei or T. congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.


Subject(s)
Boron Compounds/metabolism , Carboxypeptidases/metabolism , Trypanocidal Agents/metabolism , Trypanosoma brucei brucei/enzymology , Trypanosoma congolense/enzymology , Trypanosoma vivax/enzymology , Trypanosomiasis, African/veterinary , Valine/analogs & derivatives , Animals , Carboxylic Acids/metabolism , Drug Resistance , Female , Livestock , Mice , Parasitemia/veterinary , Prodrugs/metabolism , Protozoan Proteins/metabolism , Trypanosoma brucei brucei/drug effects , Trypanosoma congolense/drug effects , Trypanosoma vivax/drug effects , Trypanosomiasis, African/drug therapy , Trypanosomiasis, African/parasitology , Valine/metabolism
2.
Proc Natl Acad Sci U S A ; 115(38): 9616-9621, 2018 09 18.
Article in English | MEDLINE | ID: mdl-30185555

ABSTRACT

African trypanosomes cause lethal and neglected tropical diseases, known as sleeping sickness in humans and nagana in animals. Current therapies are limited, but fortunately, promising therapies are in advanced clinical and veterinary development, including acoziborole (AN5568 or SCYX-7158) and AN11736, respectively. These benzoxaboroles will likely be key to the World Health Organization's target of disease control by 2030. Their mode of action was previously unknown. We have developed a high-coverage overexpression library and use it here to explore drug mode of action in Trypanosoma brucei Initially, an inhibitor with a known target was used to select for drug resistance and to test massive parallel library screening and genome-wide mapping; this effectively identified the known target and validated the approach. Subsequently, the overexpression screening approach was used to identify the target of the benzoxaboroles, Cleavage and Polyadenylation Specificity Factor 3 (CPSF3, Tb927.4.1340). We validated the CPSF3 endonuclease as the target, using independent overexpression strains. Knockdown provided genetic validation of CPSF3 as essential, and GFP tagging confirmed the expected nuclear localization. Molecular docking and CRISPR-Cas9-based editing demonstrated how acoziborole can specifically block the active site and mRNA processing by parasite, but not host CPSF3. Thus, our findings provide both genetic and chemical validation for CPSF3 as an important drug target in trypanosomes and reveal inhibition of mRNA maturation as the mode of action of the trypanocidal benzoxaboroles. Understanding the mechanism of action of benzoxaborole-based therapies can assist development of improved therapies, as well as the prediction and monitoring of resistance, if or when it arises.


Subject(s)
Cleavage And Polyadenylation Specificity Factor/antagonists & inhibitors , Protozoan Proteins/antagonists & inhibitors , Trypanocidal Agents/pharmacology , Trypanosoma brucei brucei/physiology , Trypanosomiasis, African/prevention & control , Animals , Benzamides/pharmacology , Benzamides/therapeutic use , Boron Compounds/pharmacology , Boron Compounds/therapeutic use , CRISPR-Cas Systems , Cell Nucleus/genetics , Cell Nucleus/metabolism , Cleavage And Polyadenylation Specificity Factor/genetics , Cleavage And Polyadenylation Specificity Factor/metabolism , Drug Resistance/drug effects , Drug Resistance/genetics , Gene Knockdown Techniques , Gene Library , High-Throughput Screening Assays/methods , Humans , Molecular Docking Simulation , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , RNA Processing, Post-Transcriptional/drug effects , RNA, Messenger/metabolism , RNA, Protozoan/metabolism , Trypanocidal Agents/therapeutic use , Trypanosoma brucei brucei/drug effects , Trypanosomiasis, African/transmission , Trypanosomiasis, African/veterinary , Valine/analogs & derivatives , Valine/pharmacology , Valine/therapeutic use
3.
PLoS Pathog ; 14(9): e1007315, 2018 09.
Article in English | MEDLINE | ID: mdl-30252911

ABSTRACT

Kinetoplastid parasites-trypanosomes and leishmanias-infect millions of humans and cause economically devastating diseases of livestock, and the few existing drugs have serious deficiencies. Benzoxaborole-based compounds are very promising potential novel anti-trypanosomal therapies, with candidates already in human and animal clinical trials. We investigated the mechanism of action of several benzoxaboroles, including AN7973, an early candidate for veterinary trypanosomosis. In all kinetoplastids, transcription is polycistronic. Individual mRNA 5'-ends are created by trans splicing of a short leader sequence, with coupled polyadenylation of the preceding mRNA. Treatment of Trypanosoma brucei with AN7973 inhibited trans splicing within 1h, as judged by loss of the Y-structure splicing intermediate, reduced levels of mRNA, and accumulation of peri-nuclear granules. Methylation of the spliced leader precursor RNA was not affected, but more prolonged AN7973 treatment caused an increase in S-adenosyl methionine and methylated lysine. Together, the results indicate that mRNA processing is a primary target of AN7973. Polyadenylation is required for kinetoplastid trans splicing, and the EC50 for AN7973 in T. brucei was increased three-fold by over-expression of the T. brucei cleavage and polyadenylation factor CPSF3, identifying CPSF3 as a potential molecular target. Molecular modeling results suggested that inhibition of CPSF3 by AN7973 is feasible. Our results thus chemically validate mRNA processing as a viable drug target in trypanosomes. Several other benzoxaboroles showed metabolomic and splicing effects that were similar to those of AN7973, identifying splicing inhibition as a common mode of action and suggesting that it might be linked to subsequent changes in methylated metabolites. Granule formation, splicing inhibition and resistance after CPSF3 expression did not, however, always correlate and prolonged selection of trypanosomes in AN7973 resulted in only 1.5-fold resistance. It is therefore possible that the modes of action of oxaboroles that target trypanosome mRNA processing might extend beyond CPSF3 inhibition.


Subject(s)
Benzoxazoles/pharmacology , RNA, Protozoan/metabolism , Trypanocidal Agents/pharmacology , Trypanosoma brucei brucei/drug effects , Trypanosoma brucei brucei/metabolism , Animals , Benzoxazoles/chemistry , Cattle , Drug Resistance/genetics , Goats , Humans , Mice , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , RNA Processing, Post-Transcriptional/drug effects , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Protozoan/genetics , Trans-Splicing/drug effects , Trypanocidal Agents/chemistry , Trypanosoma brucei brucei/genetics , Trypanosoma congolense/drug effects , Trypanosoma congolense/genetics , Trypanosoma congolense/metabolism , Trypanosoma vivax/drug effects , Trypanosoma vivax/genetics , Trypanosoma vivax/metabolism , Trypanosomiasis/drug therapy , Trypanosomiasis/parasitology
4.
PLoS Pathog ; 14(2): e1006850, 2018 02.
Article in English | MEDLINE | ID: mdl-29425238

ABSTRACT

Recent development of benzoxaborole-based chemistry gave rise to a collection of compounds with great potential in targeting diverse infectious diseases, including human African Trypanosomiasis (HAT), a devastating neglected tropical disease. However, further medicinal development is largely restricted by a lack of insight into mechanism of action (MoA) in pathogenic kinetoplastids. We adopted a multidisciplinary approach, combining a high-throughput forward genetic screen with functional group focused chemical biological, structural biology and biochemical analyses, to tackle the complex MoAs of benzoxaboroles in Trypanosoma brucei. We describe an oxidative enzymatic pathway composed of host semicarbazide-sensitive amine oxidase and a trypanosomal aldehyde dehydrogenase TbALDH3. Two sequential reactions through this pathway serve as the key underlying mechanism for activating a series of 4-aminomethylphenoxy-benzoxaboroles as potent trypanocides; the methylamine parental compounds as pro-drugs are transformed first into intermediate aldehyde metabolites, and further into the carboxylate metabolites as effective forms. Moreover, comparative biochemical and crystallographic analyses elucidated the catalytic specificity of TbALDH3 towards the benzaldehyde benzoxaborole metabolites as xenogeneic substrates. Overall, this work proposes a novel drug activation mechanism dependent on both host and parasite metabolism of primary amine containing molecules, which contributes a new perspective to our understanding of the benzoxaborole MoA, and could be further exploited to improve the therapeutic index of antimicrobial compounds.


Subject(s)
Aldehyde Dehydrogenase/metabolism , Amine Oxidase (Copper-Containing)/metabolism , Boron Compounds/metabolism , Models, Biological , Prodrugs/metabolism , Trypanocidal Agents/metabolism , Trypanosoma brucei brucei/enzymology , Activation, Metabolic , Aldehyde Dehydrogenase/antagonists & inhibitors , Aldehyde Dehydrogenase/chemistry , Aldehyde Dehydrogenase/genetics , Aldehyde Oxidoreductases/antagonists & inhibitors , Aldehyde Oxidoreductases/chemistry , Aldehyde Oxidoreductases/genetics , Aldehyde Oxidoreductases/metabolism , Amine Oxidase (Copper-Containing)/antagonists & inhibitors , Amine Oxidase (Copper-Containing)/chemistry , Amine Oxidase (Copper-Containing)/genetics , Amino Acid Substitution , Animals , Boron Compounds/chemistry , Boron Compounds/pharmacology , Drug Resistance , High-Throughput Screening Assays , Humans , Molecular Structure , Mutation , Phylogeny , Prodrugs/chemistry , Prodrugs/pharmacology , Protein Interaction Domains and Motifs , RNA Interference , Rats , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Structure-Activity Relationship , Trypanocidal Agents/chemistry , Trypanocidal Agents/pharmacology , Trypanosoma brucei brucei/drug effects , Trypanosoma brucei brucei/physiology
5.
Bioorg Med Chem Lett ; 28(1): 6-10, 2018 01 01.
Article in English | MEDLINE | ID: mdl-29169674

ABSTRACT

Novel l-valinate amide benzoxaboroles and analogues were designed and synthesized for a structure-activity-relationship (SAR) investigation to optimize the growth inhibitory activity against Trypanosoma congolense (T. congolense) and Trypanosoma vivax (T. vivax) parasites. The study identified 4-fluorobenzyl (1-hydroxy-7-methyl-1,3-dihydrobenzo[c][1,2]oxaborole-6-carbonyl)-l-valinate (5, AN11736), which showed IC50 values of 0.15 nM against T. congolense and 1.3 nM against T. vivax, and demonstrated 100% efficacy with a single dose of 10 mg/kg against both T. congolense and T. vivax in mouse models of infection (IP dosing) and in the target animal, cattle, dosed intramuscularly. AN11736 has been advanced to early development studies.


Subject(s)
Antiprotozoal Agents/chemical synthesis , Boron Compounds/chemical synthesis , Trypanosomiasis, African/drug therapy , Valine/analogs & derivatives , Animals , Antiprotozoal Agents/pharmacology , Antiprotozoal Agents/therapeutic use , Boron Compounds/pharmacology , Boron Compounds/therapeutic use , Cattle , Mice , Structure-Activity Relationship , Trypanosoma congolense/drug effects , Trypanosoma vivax/drug effects , Trypanosomiasis, African/pathology , Trypanosomiasis, African/veterinary , Valine/chemical synthesis , Valine/pharmacology , Valine/therapeutic use
6.
Antimicrob Agents Chemother ; 60(8): 4886-95, 2016 08.
Article in English | MEDLINE | ID: mdl-27270277

ABSTRACT

There is a need for new antimalarials, ideally with novel mechanisms of action. Benzoxaboroles have been shown to be active against bacteria, fungi, and trypanosomes. Therefore, we investigated the antimalarial activity and mechanism of action of 3-aminomethyl benzoxaboroles against Plasmodium falciparum Two 3-aminomethyl compounds, AN6426 and AN8432, demonstrated good potency against cultured multidrug-resistant (W2 strain) P. falciparum (50% inhibitory concentration [IC50] of 310 nM and 490 nM, respectively) and efficacy against murine Plasmodium berghei infection when administered orally once daily for 4 days (90% effective dose [ED90], 7.4 and 16.2 mg/kg of body weight, respectively). To characterize mechanisms of action, we selected parasites with decreased drug sensitivity by culturing with stepwise increases in concentration of AN6426. Resistant clones were characterized by whole-genome sequencing. Three generations of resistant parasites had polymorphisms in the predicted editing domain of the gene encoding a P. falciparum leucyl-tRNA synthetase (LeuRS; PF3D7_0622800) and in another gene (PF3D7_1218100), which encodes a protein of unknown function. Solution of the structure of the P. falciparum LeuRS editing domain suggested key roles for mutated residues in LeuRS editing. Short incubations with AN6426 and AN8432, unlike artemisinin, caused dose-dependent inhibition of [(14)C]leucine incorporation by cultured wild-type, but not resistant, parasites. The growth of resistant, but not wild-type, parasites was impaired in the presence of the unnatural amino acid norvaline, consistent with a loss of LeuRS editing activity in resistant parasites. In summary, the benzoxaboroles AN6426 and AN8432 offer effective antimalarial activity and act, at least in part, against a novel target, the editing domain of P. falciparum LeuRS.


Subject(s)
Antimalarials/pharmacology , Leucine-tRNA Ligase/metabolism , Malaria, Falciparum/drug therapy , Plasmodium falciparum/drug effects , Boron Compounds/pharmacology , Drug Resistance/drug effects , Inhibitory Concentration 50 , Malaria, Falciparum/parasitology , Plasmodium falciparum/metabolism
7.
Antimicrob Agents Chemother ; 60(10): 5817-27, 2016 10.
Article in English | MEDLINE | ID: mdl-27431220

ABSTRACT

The apicomplexan parasites Cryptosporidium and Toxoplasma are serious threats to human health. Cryptosporidiosis is a severe diarrheal disease in malnourished children and immunocompromised individuals, with the only FDA-approved drug treatment currently being nitazoxanide. The existing therapies for toxoplasmosis, an important pathology in immunocompromised individuals and pregnant women, also have serious limitations. With the aim of developing alternative therapeutic options to address these health problems, we tested a number of benzoxaboroles, boron-containing compounds shown to be active against various infectious agents, for inhibition of the growth of Cryptosporidium parasites in mammalian cells. A 3-aminomethyl benzoxaborole, AN6426, with activity in the micromolar range and with activity comparable to that of nitazoxanide, was identified and further characterized using biophysical measurements of affinity and crystal structures of complexes with the editing domain of Cryptosporidium leucyl-tRNA synthetase (LeuRS). The same compound was shown to be active against Toxoplasma parasites, with the activity being enhanced in the presence of norvaline, an amino acid that can be mischarged by LeuRS. Our observations are consistent with AN6426 inhibiting protein synthesis in both Cryptosporidium and Toxoplasma by forming a covalent adduct with tRNA(Leu) in the LeuRS editing active site and suggest that further exploitation of the benzoxaborole scaffold is a valid strategy to develop novel, much needed antiparasitic agents.


Subject(s)
Antiprotozoal Agents/pharmacology , Boron Compounds/pharmacology , Cryptosporidium parvum/drug effects , Leucine-tRNA Ligase/antagonists & inhibitors , Leucine-tRNA Ligase/chemistry , Toxoplasma/drug effects , Animals , Antiprotozoal Agents/chemistry , Antiprotozoal Agents/metabolism , Boron Compounds/chemistry , Crystallography, X-Ray , Dogs , Drug Evaluation, Preclinical/methods , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fibroblasts/drug effects , Fibroblasts/parasitology , Humans , Leucine-tRNA Ligase/metabolism , Madin Darby Canine Kidney Cells/parasitology , Molecular Docking Simulation , Protein Conformation
8.
Antimicrob Agents Chemother ; 57(3): 1394-403, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23295920

ABSTRACT

Gram-negative bacteria cause approximately 70% of the infections in intensive care units. A growing number of bacterial isolates responsible for these infections are resistant to currently available antibiotics and to many in development. Most agents under development are modifications of existing drug classes, which only partially overcome existing resistance mechanisms. Therefore, new classes of Gram-negative antibacterials with truly novel modes of action are needed to circumvent these existing resistance mechanisms. We have previously identified a new a way to inhibit an aminoacyl-tRNA synthetase, leucyl-tRNA synthetase (LeuRS), in fungi via the oxaborole tRNA trapping (OBORT) mechanism. Herein, we show how we have modified the OBORT mechanism using a structure-guided approach to develop a new boron-based antibiotic class, the aminomethylbenzoxaboroles, which inhibit bacterial leucyl-tRNA synthetase and have activity against Gram-negative bacteria by largely evading the main efflux mechanisms in Escherichia coli and Pseudomonas aeruginosa. The lead analogue, AN3365, is active against Gram-negative bacteria, including Enterobacteriaceae bearing NDM-1 and KPC carbapenemases, as well as P. aeruginosa. This novel boron-based antibacterial, AN3365, has good mouse pharmacokinetics and was efficacious against E. coli and P. aeruginosa in murine thigh infection models, which suggest that this novel class of antibacterials has the potential to address this unmet medical need.


Subject(s)
Amino Acyl-tRNA Synthetases/antagonists & inhibitors , Anti-Bacterial Agents/pharmacology , Boron Compounds/pharmacology , Escherichia coli/drug effects , Gram-Negative Bacterial Infections/drug therapy , Pseudomonas aeruginosa/drug effects , Amino Acyl-tRNA Synthetases/metabolism , Animals , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/pharmacokinetics , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Boron Compounds/chemical synthesis , Boron Compounds/pharmacokinetics , Crystallography, X-Ray , Drug Discovery , Drug Resistance, Multiple, Bacterial/drug effects , Escherichia coli/enzymology , Female , Gram-Negative Bacterial Infections/microbiology , Humans , Leucine/metabolism , Mice , Microbial Sensitivity Tests , Molecular Docking Simulation , Pseudomonas aeruginosa/enzymology , Structure-Activity Relationship , Thigh/microbiology , beta-Lactamase Inhibitors , beta-Lactamases/metabolism
9.
J Pharmacol Exp Ther ; 344(2): 436-46, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23192653

ABSTRACT

Pro-inflammatory cytokines play a critical role in the development of autoimmune and inflammatory diseases. Targeting the cytokine environment has proven efficient for averting inflammation. In this study, we reported that 6-[4-(aminomethyl)-2-chlorophenoxyl]benzo[c][1,2]oxaborol-1(3H)-ol (AN3485), a benzoxaborole analog, inhibited TLR2-, TLR3-, TLR4-, and TLR5-mediated TNF-α, IL-1ß, and IL-6 release from human PBMCs and isolated monocytes with IC(50) values ranging from 18 to 580 nM, and the inhibition was mediated at the transcriptional level. Topical administration of AN3485 significantly reduced PMA-induced contact dermatitis and oxazolone-induced delayed-type hypersensitivity in mice, indicating its capability of penetrating skin and potential topical application in skin inflammation. Oral administration of AN3485 showed dose-dependent suppression of LPS-induced TNF-α and IL-6 production in mice with an ED(90) of 30 mg/kg. Oral AN3485, 35 mg/kg, twice a day, suppressed collagen-induced arthritis in mice over a 20-day period. The potent anti-inflammatory activity in in vitro and in vivo disease models makes AN3485 an attractive therapeutic lead for a variety of cutaneous and systemic inflammatory diseases.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/therapeutic use , Arthritis/drug therapy , Boron Compounds/therapeutic use , Bridged Bicyclo Compounds, Heterocyclic/therapeutic use , Dermatitis, Allergic Contact/drug therapy , Drug Hypersensitivity/drug therapy , Hypersensitivity, Delayed/drug therapy , Toll-Like Receptors/antagonists & inhibitors , Administration, Oral , Animals , Anti-Inflammatory Agents, Non-Steroidal/administration & dosage , Anti-Inflammatory Agents, Non-Steroidal/pharmacokinetics , Anti-Inflammatory Agents, Non-Steroidal/toxicity , Arthritis/immunology , Arthritis/metabolism , Boron Compounds/administration & dosage , Boron Compounds/pharmacokinetics , Boron Compounds/toxicity , Bridged Bicyclo Compounds, Heterocyclic/administration & dosage , Bridged Bicyclo Compounds, Heterocyclic/pharmacokinetics , Bridged Bicyclo Compounds, Heterocyclic/toxicity , Cell Survival/drug effects , Cells, Cultured , Cytokines/biosynthesis , Cytokines/metabolism , Dermatitis, Allergic Contact/etiology , Dermatitis, Allergic Contact/immunology , Dermatitis, Allergic Contact/metabolism , Dose-Response Relationship, Drug , Drug Hypersensitivity/etiology , Drug Hypersensitivity/immunology , Drug Hypersensitivity/metabolism , Female , Humans , Hypersensitivity, Delayed/chemically induced , Hypersensitivity, Delayed/immunology , Hypersensitivity, Delayed/metabolism , Leukocytes, Mononuclear/drug effects , Leukocytes, Mononuclear/immunology , Leukocytes, Mononuclear/metabolism , Lipopolysaccharides/pharmacology , Male , Mice , Mice, Inbred BALB C
10.
J Pharmacol Exp Ther ; 347(3): 615-25, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24049062

ABSTRACT

Benzoxaboroles are a novel class of drug-like compounds that have been rich sources of novel inhibitors for various enzymes and of new drugs. While examining benzoxaborole activity in phenotypic screens, our attention was attracted by the (aminomethylphenoxy)benzoxaborole family, which potently inhibited Toll-like receptor-stimulated cytokine secretion from leukocytes. After considering their structure-activity relationships and the central role of kinases in leukocyte biology, we performed a kinome-wide screen to investigate the members of the (aminomethylphenoxy)benzoxaborole family. This technique identified Rho-activated kinase (ROCK) as a target. We showed competitive behavior, with respect to ATP, and then determined the ROCK2-drug cocrystal structure. The drug occupies the ATP site in which the oxaborole moiety provides hydrogen bond donors and acceptors to the hinge, and the aminomethyl group interacts with the magnesium/ATP-interacting aspartic acid common to protein kinases. The series exhibits excellent selectivity against most of the kinome, with greater than 15-fold selectivity against the next best member of the AGC protein kinase subfamily. Medicinal chemistry efforts with structure-based design resulted in a compound with a Ki of 170 nM. Cellular studies revealed strong enzyme inhibition rank correlation with suppression of intracellular phosphorylation of a ROCK substrate. The biochemical potencies of these compounds also translated to functional activity, causing smooth muscle relaxation in rat aorta and guinea pig trachea. The series exhibited oral availability and one member reduced rat blood pressure, consistent with ROCK's role in smooth muscle contraction. Thus, the benzoxaborole moiety represents a novel hinge-binding kinase scaffold that may have potential for therapeutic use.


Subject(s)
Boron Compounds/metabolism , Protein Kinase Inhibitors/metabolism , Protein Kinase Inhibitors/pharmacology , rho-Associated Kinases/antagonists & inhibitors , rho-Associated Kinases/metabolism , Animals , Aorta, Thoracic/drug effects , Blood Pressure/drug effects , Cytokines/blood , Humans , Jurkat Cells , Models, Molecular , Muscle Contraction/drug effects , Muscle Relaxation/drug effects , Muscle, Smooth/drug effects , Muscle, Smooth, Vascular/drug effects , Myocytes, Smooth Muscle/drug effects , Phosphorylation , Protein Kinase Inhibitors/chemistry , Protein Phosphatase 1/metabolism , Rats , Rats, Inbred SHR , Rats, Sprague-Dawley , Structure-Activity Relationship , Trachea/drug effects , rho-Associated Kinases/genetics
11.
Bioorg Med Chem Lett ; 23(6): 1680-3, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23411072

ABSTRACT

A series of novel 6-(aminomethylphenoxy)benzoxaborole analogs was synthesized for the investigation of the structure-activity relationship of the inhibition of TNF-alpha, IL-1beta, and IL-6, from lipopolysaccharide stimulated peripheral blood mononuclear cells. Compounds 9d and 9e showed potent activity against all three cytokines with IC50 values between 33 and 83nM. Chloro substituted analog 9e (AN3485) is considered to be a promising lead for novel anti-inflammatory agent with a favorable pharmacokinetic profile.


Subject(s)
Anti-Inflammatory Agents/chemistry , Benzoxazoles/chemistry , Boron Compounds/chemistry , Bridged Bicyclo Compounds, Heterocyclic/metabolism , Animals , Anti-Inflammatory Agents/metabolism , Anti-Inflammatory Agents/pharmacokinetics , Boron Compounds/metabolism , Boron Compounds/pharmacokinetics , Bridged Bicyclo Compounds, Heterocyclic/chemistry , Bridged Bicyclo Compounds, Heterocyclic/pharmacokinetics , Half-Life , Humans , Interleukin-1beta/antagonists & inhibitors , Interleukin-1beta/metabolism , Interleukin-6/antagonists & inhibitors , Interleukin-6/metabolism , Kinetics , Leukocytes, Mononuclear/drug effects , Lipopolysaccharides/toxicity , Mice , Protein Binding , Structure-Activity Relationship , Tumor Necrosis Factor-alpha/antagonists & inhibitors , Tumor Necrosis Factor-alpha/metabolism
12.
Bioorg Med Chem Lett ; 23(21): 5870-3, 2013 Nov 01.
Article in English | MEDLINE | ID: mdl-24075731

ABSTRACT

Structure-activity relationships of 6-(benzoylamino)benzoxaborole analogs were investigated for the inhibition of TNF-α, IL-1ß, and IL-6 from lipopolysaccharide stimulated peripheral blood mononuclear cells. Compound 1q showed potent activity against all three cytokines with IC50 values between 0.19 and 0.50µM, inhibited LPS-induced TNF-α and IL-6 elevation in mice and improved collagen-induced arthritis in mice. Compound 1q (AN4161) is considered to be a promising lead for novel anti-inflammatory agent with an excellent pharmacokinetic profile.


Subject(s)
Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/therapeutic use , Arthritis, Experimental/drug therapy , Benzene Derivatives/chemistry , Benzene Derivatives/therapeutic use , Boron Compounds/chemistry , Boron Compounds/therapeutic use , Animals , Anti-Inflammatory Agents/pharmacokinetics , Anti-Inflammatory Agents/pharmacology , Benzene Derivatives/pharmacokinetics , Benzene Derivatives/pharmacology , Boron Compounds/pharmacokinetics , Boron Compounds/pharmacology , Interleukin-1beta/immunology , Interleukin-6/immunology , Leukocytes, Mononuclear/drug effects , Leukocytes, Mononuclear/immunology , Lipopolysaccharides/immunology , Mice , Structure-Activity Relationship , Tumor Necrosis Factor-alpha/immunology
13.
Bioorg Med Chem Lett ; 22(3): 1299-307, 2012 Feb 01.
Article in English | MEDLINE | ID: mdl-22243961

ABSTRACT

A series of new boron-containing benzoxaborole compounds was designed and synthesized for a continuing structure-activity relationship (SAR) investigation to assess the antimalarial activity changes derived from side-chain structural variation, substituent modification on the benzene ring and removal of boron from five-membered oxaborole ring. This SAR study demonstrated that boron is required for the antimalarial activity, and discovered that three fluoro-substituted 7-(2-carboxyethyl)-1,3-dihydro-1-hydroxy-2,1-benzoxaboroles (9, 14 and 20) have excellent potencies (IC(50) 0.026-0.209 µM) against Plasmodium falciparum.


Subject(s)
Antimalarials/chemical synthesis , Antimalarials/pharmacology , Boron Compounds/chemical synthesis , Boron Compounds/pharmacology , Bridged Bicyclo Compounds, Heterocyclic/chemical synthesis , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Fluorine/chemistry , Plasmodium falciparum/drug effects , Antimalarials/chemistry , Antimalarials/toxicity , Boron Compounds/chemistry , Boron Compounds/toxicity , Bridged Bicyclo Compounds, Heterocyclic/chemistry , Bridged Bicyclo Compounds, Heterocyclic/toxicity , Cell Survival/drug effects , HeLa Cells , Humans , Inhibitory Concentration 50 , Jurkat Cells , Molecular Structure , Structure-Activity Relationship
14.
Nat Microbiol ; 7(10): 1536-1546, 2022 10.
Article in English | MEDLINE | ID: mdl-36065062

ABSTRACT

Trypanosoma cruzi, the agent of Chagas disease, probably infects tens of millions of people, primarily in Latin America, causing morbidity and mortality. The options for treatment and prevention of Chagas disease are limited and underutilized. Here we describe the discovery of a series of benzoxaborole compounds with nanomolar activity against extra- and intracellular stages of T. cruzi. Leveraging both ongoing drug discovery efforts in related kinetoplastids, and the exceptional models for rapid drug screening and optimization in T. cruzi, we have identified the prodrug AN15368 that is activated by parasite carboxypeptidases to yield a compound that targets the messenger RNA processing pathway in T. cruzi. AN15368 was found to be active in vitro and in vivo against a range of genetically distinct T. cruzi lineages and was uniformly curative in non-human primates (NHPs) with long-term naturally acquired infections. Treatment in NHPs also revealed no detectable acute toxicity or long-term health or reproductive impact. Thus, AN15368 is an extensively validated and apparently safe, clinically ready candidate with promising potential for prevention and treatment of Chagas disease.


Subject(s)
Chagas Disease , Prodrugs , Trypanocidal Agents , Trypanosoma cruzi , Animals , Chagas Disease/drug therapy , Chagas Disease/parasitology , Primates , Prodrugs/pharmacology , Prodrugs/therapeutic use , Trypanocidal Agents/pharmacology , Trypanocidal Agents/therapeutic use
15.
Bioorg Med Chem Lett ; 21(2): 644-51, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-21195617

ABSTRACT

A series of boron-containing benzoxaborole compounds was designed and synthesized for a structure-activity relationship investigation surrounding 7-(HOOCCH(2)CH(2))-1,3-dihydro-1-hydroxy-2,1-benzoxaborole (1) with the goal of discovering a new antimalarial treatment. Compound 1 demonstrates the best potency (IC(50)=26nM) against Plasmodium falciparum and has good drug-like properties, with low molecular weight (206.00), low ClogP (0.86) and high water solubility (750µg/mL at pH 7).


Subject(s)
Antimalarials/chemistry , Antimalarials/pharmacology , Boron Compounds/chemistry , Boron Compounds/pharmacology , Malaria, Falciparum/drug therapy , Plasmodium falciparum/drug effects , Antimalarials/chemical synthesis , Boron Compounds/chemical synthesis , Cell Line , Cell Survival/drug effects , Humans , Parasitic Sensitivity Tests , Structure-Activity Relationship
16.
J Med Chem ; 64(21): 16159-16176, 2021 11 11.
Article in English | MEDLINE | ID: mdl-34711050

ABSTRACT

Visceral leishmaniasis (VL) is a parasitic disease endemic across multiple regions of the world and is fatal if untreated. Current therapies are unsuitable, and there is an urgent need for safe, short-course, and low-cost oral treatments to combat this neglected disease. The benzoxaborole chemotype has previously delivered clinical candidates for the treatment of other parasitic diseases. Here, we describe the development and optimization of this series, leading to the identification of compounds with potent in vitro and in vivo antileishmanial activity. The lead compound (DNDI-6148) combines impressive in vivo efficacy (>98% reduction in parasite burden) with pharmaceutical properties suitable for onward development and an acceptable safety profile. Detailed mode of action studies confirm that DNDI-6148 acts principally through the inhibition of Leishmania cleavage and polyadenylation specificity factor (CPSF3) endonuclease. As a result of these studies and its promising profile, DNDI-6148 has been declared a preclinical candidate for the treatment of VL.


Subject(s)
Antiprotozoal Agents/therapeutic use , Benzoxazoles/therapeutic use , Boron Compounds/therapeutic use , Leishmaniasis, Visceral/drug therapy , Pyridines/therapeutic use , Animals , Antiprotozoal Agents/chemistry , Benzoxazoles/chemistry , Boron Compounds/chemistry , Cricetinae , Disease Models, Animal , Dogs , Humans , Mice , Pyridines/chemistry , Structure-Activity Relationship
17.
Antimicrob Agents Chemother ; 54(10): 4379-88, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20660666

ABSTRACT

We report the discovery of novel boron-containing molecules, exemplified by N-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-6-yl)-2-trifluoromethylbenzamide (AN3520) and 4-fluoro-N-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-6-yl)-2-trifluoromethylbenzamide (SCYX-6759), as potent compounds against Trypanosoma brucei in vitro, including the two subspecies responsible for human disease T. b. rhodesiense and T. b. gambiense. These oxaborole carboxamides cured stage 1 (hemolymphatic) trypanosomiasis infection in mice when administered orally at 2.5 to 10 mg/kg of body weight for 4 consecutive days. In stage 2 disease (central nervous system [CNS] involvement), mice infected with T. b. brucei were cured when AN3520 or SCYX-6759 were administered intraperitoneally or orally (50 mg/kg) twice daily for 7 days. Oxaborole-treated animals did not exhibit gross signs of compound-related acute or subchronic toxicity. Metabolism and pharmacokinetic studies in several species, including nonhuman primates, demonstrate that both SCYX-6759 and AN3520 are low-clearance compounds. Both compounds were well absorbed following oral dosing in multiple species and also demonstrated the ability to cross the blood-brain barrier with no evidence of interaction with the P-glycoprotein transporter. Overall, SCYX-6759 demonstrated superior pharmacokinetics, and this was reflected in better efficacy against stage 2 disease in the mouse model. On the whole, oxaboroles demonstrate potent activity against all T. brucei subspecies, excellent physicochemical profiles, in vitro metabolic stability, a low potential for CYP450 inhibition, a lack of active efflux by the P-glycoprotein transporter, and high permeability. These properties strongly suggest that these novel chemical entities are suitable leads for the development of new and effective orally administered treatments for human African trypanosomiasis.


Subject(s)
Imidazoles/therapeutic use , Trypanocidal Agents/therapeutic use , Trypanosoma brucei brucei/pathogenicity , Trypanosomiasis, African/drug therapy , Animals , Female , Humans , Imidazoles/chemistry , Macaca fascicularis , Male , Mice , Molecular Structure , Rats , Rats, Sprague-Dawley , Trypanosoma brucei brucei/drug effects
18.
Bioorg Med Chem Lett ; 20(7): 2270-4, 2010 Apr 01.
Article in English | MEDLINE | ID: mdl-20188549

ABSTRACT

PDE4 inhibitors are a validated approach as anti-inflammatory agents but are limited by systemic side effects including emesis. We report a soft-drug strategy incorporating a carboxylic ester group into boron-containing PDE4 inhibitors leading to the discovery of a series of benzoxaborole compounds with good potency (for example IC(50)=47 nM of compound 2) and low emetic activity. These compounds are intended for dermatological use further limiting possible systemic side effects.


Subject(s)
Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/pharmacology , Boron/chemistry , Boron/pharmacology , Cyclic Nucleotide Phosphodiesterases, Type 4/metabolism , Phosphodiesterase 4 Inhibitors , Animals , Anti-Inflammatory Agents/blood , Anti-Inflammatory Agents/therapeutic use , Boron/blood , Boron/therapeutic use , Ear/pathology , Edema/drug therapy , Humans , Mice
19.
mBio ; 11(1)2020 01 28.
Article in English | MEDLINE | ID: mdl-31992618

ABSTRACT

New antimalarial drugs are needed. The benzoxaborole AN13762 showed excellent activity against cultured Plasmodium falciparum, against fresh Ugandan P. falciparum isolates, and in murine malaria models. To gain mechanistic insights, we selected in vitro for P. falciparum isolates resistant to AN13762. In all of 11 independent selections with 100 to 200 nM AN13762, the 50% inhibitory concentration (IC50) increased from 18-118 nM to 180-890 nM, and whole-genome sequencing of resistant parasites demonstrated mutations in prodrug activation and resistance esterase (PfPARE). The introduction of PfPARE mutations led to a similar level of resistance, and recombinant PfPARE hydrolyzed AN13762 to the benzoxaborole AN10248, which has activity similar to that of AN13762 but for which selection of resistance was not readily achieved. Parasites further selected with micromolar concentrations of AN13762 developed higher-level resistance (IC50, 1.9 to 5.0 µM), and sequencing revealed additional mutations in any of 5 genes, 4 of which were associated with ubiquitination/sumoylation enzyme cascades; the introduction of one of these mutations, in SUMO-activating enzyme subunit 2, led to a similar level of resistance. The other gene mutated in highly resistant parasites encodes the P. falciparum cleavage and specificity factor homolog PfCPSF3, previously identified as the antimalarial target of another benzoxaborole. Parasites selected for resistance to AN13762 were cross-resistant with a close analog, AN13956, but not with standard antimalarials, AN10248, or other benzoxaboroles known to have different P. falciparum targets. Thus, AN13762 appears to have a novel mechanism of antimalarial action and multiple mechanisms of resistance, including loss of function of PfPARE preventing activation to AN10248, followed by alterations in ubiquitination/sumoylation pathways or PfCPSF3.IMPORTANCE Benzoxaboroles are under study as potential new drugs to treat malaria. One benzoxaborole, AN13762, has potent activity and promising features, but its mechanisms of action and resistance are unknown. To gain insights into these mechanisms, we cultured malaria parasites with nonlethal concentrations of AN13762 and generated parasites with varied levels of resistance. Parasites with low-level resistance had mutations in PfPARE, which processes AN13762 into an active metabolite; PfPARE mutations prevented this processing. Parasites with high-level resistance had mutations in any of a number of enzymes, mostly those involved in stress responses. Parasites selected for AN13762 resistance were not resistant to other antimalarials, suggesting novel mechanisms of action and resistance for AN13762, a valuable feature for a new class of antimalarial drugs.


Subject(s)
Antimalarials/pharmacology , Drug Resistance , Malaria, Falciparum/parasitology , Plasmodium falciparum/drug effects , Plasmodium falciparum/metabolism , Protozoan Proteins/metabolism , Antimalarials/chemistry , Chromatography, Liquid , DNA Mutational Analysis , Humans , Mass Spectrometry , Molecular Structure , Mutation , Polymorphism, Single Nucleotide , Sumoylation/drug effects , Ubiquitination/drug effects
20.
PLoS Negl Trop Dis ; 14(1): e0007957, 2020 01.
Article in English | MEDLINE | ID: mdl-31986143

ABSTRACT

The elimination of filarial diseases such as onchocerciasis and lymphatic filariasis is hampered by the lack of a macrofilaricidal-adult worm killing-drug. In the present study, we tested the in vivo efficacy of AN11251, a boron-pleuromutilin that targets endosymbiotic Wolbachia bacteria from filarial nematodes and compared its efficacy to doxycycline and rifampicin. Doxycycline and rifampicin were previously shown to deplete Wolbachia endosymbionts leading to a permanent sterilization of the female adult filariae and adult worm death in human clinical studies. Twice-daily oral treatment of Litomosoides sigmodontis-infected mice with 200 mg/kg AN11251 for 10 days achieved a Wolbachia depletion > 99.9% in the adult worms, exceeding the Wolbachia reduction by 10-day treatments with bioequivalent human doses of doxycycline and a similar reduction as high-dose rifampicin (35 mg/kg). Wolbachia reductions of > 99% were also accomplished by 14 days of oral AN11251 at a lower twice-daily dose (50 mg/kg) or once-per-day 200 mg/kg AN11251 treatments. The combinations tested of AN11251 with doxycycline had no clear beneficial impact on Wolbachia depletion, achieving a > 97% Wolbachia reduction with 7 days of treatment. These results indicate that AN11251 is superior to doxycycline and comparable to high-dose rifampicin in the L. sigmodontis mouse model, allowing treatment regimens as short as 10-14 days. Therefore, AN11251 represents a promising pre-clinical candidate that was identified in the L. sigmodontis model, and could be further evaluated and developed as potential clinical candidate for human lymphatic filariasis and onchocerciasis.


Subject(s)
Anti-Bacterial Agents/pharmacology , Diterpenes/pharmacology , Filariasis/drug therapy , Filarioidea/drug effects , Polycyclic Compounds/pharmacology , Wolbachia/drug effects , Animals , Boron , Doxycycline/pharmacology , Female , Filariasis/microbiology , Filarioidea/microbiology , Mice, Inbred BALB C , Rifampin/pharmacology , Symbiosis , Pleuromutilins
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