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1.
Underrepresentation of activating KIR gene expression in single-cell RNA-seq data is due to KIR gene misassignment.
Eur J Immunol
; 54(1): e2350590, 2024 Jan.
Article
in English
| MEDLINE | ID: mdl-37944995
2.
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data.
Genome Res
; 31(4): 645-658, 2021 04.
Article
in English
| MEDLINE | ID: mdl-33722935
3.
Adaptation to HLA-associated immune pressure over the course of HIV infection and in circulating HIV-1 strains.
PLoS Pathog
; 18(12): e1010965, 2022 12.
Article
in English
| MEDLINE | ID: mdl-36525463
4.
In chronic infection, HIV gag-specific CD4+ T cell receptor diversity is higher than CD8+ T cell receptor diversity and is associated with less HIV quasispecies diversity.
J Virol
; 95(8)2021 03 25.
Article
in English
| MEDLINE | ID: mdl-33536169
5.
Variants of HCMV UL18 Sequenced Directly from Clinical Specimens Associate with Antibody and T-Cell Responses to HCMV.
Int J Mol Sci
; 23(21)2022 Oct 26.
Article
in English
| MEDLINE | ID: mdl-36361707
6.
Sequencing of the Viral UL111a Gene Directly from Clinical Specimens Reveals Variants of HCMV-Encoded IL-10 That Are Associated with Altered Immune Responses to HCMV.
Int J Mol Sci
; 23(9)2022 Apr 22.
Article
in English
| MEDLINE | ID: mdl-35563032
7.
Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV.
PLoS Pathog
; 15(12): e1008177, 2019 12.
Article
in English
| MEDLINE | ID: mdl-31821379
8.
Escape of Hepatitis C Virus from Epitope I Neutralization Increases Sensitivity of Other Neutralization Epitopes.
J Virol
; 92(9)2018 05 01.
Article
in English
| MEDLINE | ID: mdl-29467319
9.
Cytomegalovirus (CMV) Epitope-Specific CD4+ T Cells Are Inflated in HIV+ CMV+ Subjects.
J Immunol
; 199(9): 3187-3201, 2017 11 01.
Article
in English
| MEDLINE | ID: mdl-28972094
10.
The broad assessment of HCV genotypes 1 and 3 antigenic targets reveals limited cross-reactivity with implications for vaccine design.
Gut
; 65(1): 112-23, 2016 Jan.
Article
in English
| MEDLINE | ID: mdl-26092843
11.
HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions.
Genes Immun
; 17(7): 412-418, 2016 Dec.
Article
in English
| MEDLINE | ID: mdl-27853144
12.
Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection.
J Virol
; 89(10): 5478-90, 2015 May.
Article
in English
| MEDLINE | ID: mdl-25740982
13.
Helicobacter pylori adaptation in vivo in response to a high-salt diet.
Infect Immun
; 83(12): 4871-83, 2015 Dec.
Article
in English
| MEDLINE | ID: mdl-26438795
14.
Fibrosing mediastinitis complicating prior histoplasmosis is associated with human leukocyte antigen DQB1*04:02 - a case control study.
BMC Infect Dis
; 15: 206, 2015 May 05.
Article
in English
| MEDLINE | ID: mdl-25940591
15.
HLA-B*27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope.
J Hepatol
; 60(1): 22-9, 2014 Jan.
Article
in English
| MEDLINE | ID: mdl-23978718
16.
Multiomic single-cell sequencing defines tissue-specific responses in Stevens-Johnson Syndrome and Toxic epidermal necrolysis.
bioRxiv
; 2024 Feb 18.
Article
in English
| MEDLINE | ID: mdl-38405793
17.
Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV) infection, and adaptation is greatest in HBV e antigen-negative disease.
J Virol
; 86(2): 1181-92, 2012 Jan.
Article
in English
| MEDLINE | ID: mdl-22072755
18.
Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection.
PLoS Pathog
; 7(9): e1002243, 2011 Sep.
Article
in English
| MEDLINE | ID: mdl-21912520
19.
Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China.
Blood
; 118(1): 98-106, 2011 Jul 07.
Article
in English
| MEDLINE | ID: mdl-21562042
20.
Subset-specific Retention of Donor Myeloid Cells After Major Histocompatibility Complex-matched and Mismatched Liver Transplantation.
Transplantation
; 107(7): 1502-1512, 2023 07 01.
Article
in English
| MEDLINE | ID: mdl-36584373